mRNA_H-paniculata_contig7627.15619.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7627.15619.1
Unique NamemRNA_H-paniculata_contig7627.15619.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig7627.15619.1 vs. uniprot
Match: D7FSI3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI3_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 2.100e-27
Identity = 55/77 (71.43%), Postives = 68/77 (88.31%), Query Frame = 3
Query:    3 FSRPMDIPEEGIEAAVAVMRSGRLFRYSCASAEGSQVALAEREFAEAAGARFAVGVNSCSSAILIALLGVGVQAGDQ 233
            F+RP+DIPEEG++ A+ V+RSGRLFRYS  +AE SQVALAE +FA+A GAR+AVGVNSCSSAILI L+ VGV+AGD+
Sbjct:   64 FTRPLDIPEEGLQTAMEVLRSGRLFRYSTEAAELSQVALAEADFAQAMGARYAVGVNSCSSAILIGLMCVGVKAGDE 140          
BLAST of mRNA_H-paniculata_contig7627.15619.1 vs. uniprot
Match: A0A7S3BR70_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BR70_9VIRI)

HSP 1 Score: 101 bits (252), Expect = 7.810e-25
Identity = 51/77 (66.23%), Postives = 64/77 (83.12%), Query Frame = 3
Query:    3 FSRPMDIPEEGIEAAVAVMRSGRLFRYSCASAEGSQVALAEREFAEAAGARFAVGVNSCSSAILIALLGVGVQAGDQ 233
            FS+PM IP+EGI+AAV VMR+GR+FRYS  SAE SQVA AE+EFAE  G ++A+ VNSCSSAI +A++ VGV+ GDQ
Sbjct:   57 FSKPMSIPQEGIDAAVEVMRTGRIFRYSSTSAETSQVANAEKEFAEMVGQKYAIAVNSCSSAIFVAMMCVGVKPGDQ 133          
BLAST of mRNA_H-paniculata_contig7627.15619.1 vs. uniprot
Match: A0A7S3FD09_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3FD09_9VIRI)

HSP 1 Score: 101 bits (252), Expect = 1.270e-23
Identity = 51/77 (66.23%), Postives = 64/77 (83.12%), Query Frame = 3
Query:    3 FSRPMDIPEEGIEAAVAVMRSGRLFRYSCASAEGSQVALAEREFAEAAGARFAVGVNSCSSAILIALLGVGVQAGDQ 233
            FS+PM IP+EGI+AAV VMR+GR+FRYS  SAE SQVA AE+EFAE  G ++A+ VNSCSSAI +A++ VGV+ GDQ
Sbjct:   57 FSKPMSIPQEGIDAAVEVMRTGRIFRYSSTSAETSQVANAEKEFAEMVGQKYAIAVNSCSSAIFVAMMCVGVKPGDQ 133          
BLAST of mRNA_H-paniculata_contig7627.15619.1 vs. uniprot
Match: A0A7S4E6V5_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E6V5_9STRA)

HSP 1 Score: 100 bits (249), Expect = 3.160e-23
Identity = 52/77 (67.53%), Postives = 61/77 (79.22%), Query Frame = 3
Query:    3 FSRPMDIPEEGIEAAVAVMRSGRLFRYSCASAEGSQVALAEREFAEAAGARFAVGVNSCSSAILIALLGVGVQAGDQ 233
            F+RPM IPEEGI AAV VMR GRLFRY   SAE SQVA AE+EFA     ++A+GVNSCSSAI++AL+ VGV+ GDQ
Sbjct:   47 FTRPMSIPEEGIAAAVEVMRGGRLFRYCATSAETSQVAQAEKEFAAMVNQKYALGVNSCSSAIMLALMAVGVEPGDQ 123          
BLAST of mRNA_H-paniculata_contig7627.15619.1 vs. uniprot
Match: A0A7S3ZU99_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZU99_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.180e-22
Identity = 52/77 (67.53%), Postives = 59/77 (76.62%), Query Frame = 3
Query:    3 FSRPMDIPEEGIEAAVAVMRSGRLFRYSCASAEGSQVALAEREFAEAAGARFAVGVNSCSSAILIALLGVGVQAGDQ 233
            FSRPM IPEEGI AAV VMR GRLFRY   SAE S VA AE+EFA     ++A+GVNSCSSAI++AL+ VGV  GDQ
Sbjct:   50 FSRPMSIPEEGIAAAVEVMRGGRLFRYCATSAETSHVAQAEKEFAAMVNQKYALGVNSCSSAIMLALMAVGVDPGDQ 126          
BLAST of mRNA_H-paniculata_contig7627.15619.1 vs. uniprot
Match: K8ECV9_9CHLO (Aminotransferase, DegT/DnrJ/EryC1/StrS family protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8ECV9_9CHLO)

HSP 1 Score: 97.1 bits (240), Expect = 7.840e-22
Identity = 49/77 (63.64%), Postives = 60/77 (77.92%), Query Frame = 3
Query:    3 FSRPMDIPEEGIEAAVAVMRSGRLFRYSCASAEGSQVALAEREFAEAAGARFAVGVNSCSSAILIALLGVGVQAGDQ 233
            FS+PM IP EGIEAA+ VM SGR+FRY   SAE S+VA AE +FAE  G ++A+GVNSCSSAI IA+L  GV+ GD+
Sbjct:  117 FSKPMSIPTEGIEAAIRVMESGRVFRYCATSAETSEVAQAEDQFAEMVGQKYAIGVNSCSSAIFIAMLATGVEQGDK 193          
BLAST of mRNA_H-paniculata_contig7627.15619.1 vs. uniprot
Match: A0A7S0J159_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J159_9EUKA)

HSP 1 Score: 89.7 bits (221), Expect = 3.150e-19
Identity = 50/77 (64.94%), Postives = 60/77 (77.92%), Query Frame = 3
Query:    3 FSRPMDIPEEGIEAAVAVMRSGRLFRYSCASAEGSQVALAEREFAEAAGARFAVGVNSCSSAILIALLGVGVQAGDQ 233
            FS+PM +P  GIEAAV VMRSGRLFRY    A  SQVALAE EFA+    ++A+GVNSCSSAI++AL+ VGV AGD+
Sbjct:  112 FSKPMAVPAAGIEAAVEVMRSGRLFRYC---AVDSQVALAESEFAQMVDQKYALGVNSCSSAIMLALMVVGVAAGDR 185          
BLAST of mRNA_H-paniculata_contig7627.15619.1 vs. uniprot
Match: D7FMY1_ECTSI (Aminotransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMY1_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 1.670e-17
Identity = 48/83 (57.83%), Postives = 59/83 (71.08%), Query Frame = 3
Query:    3 FSRPMDIPEEGIEAAVAVMRSGRLFRYSCASAEGSQVALAEREFA------EAAGARFAVGVNSCSSAILIALLGVGVQAGDQ 233
            F+ PM IPEE I   V V+RSGR+ RYS +SAE SQVA  E+E        E  G ++A+GVNSCSSAILIALL VGV++GD+
Sbjct:   44 FTLPMGIPEESIAGVVDVLRSGRINRYSASSAEASQVAQLEQELVDFTGRGEGPGVKYALGVNSCSSAILIALLSVGVKSGDE 126          
BLAST of mRNA_H-paniculata_contig7627.15619.1 vs. uniprot
Match: A0A2E3H0W2_9RHOB (Aminotransferase n=1 Tax=Pseudooceanicola sp. TaxID=1914328 RepID=A0A2E3H0W2_9RHOB)

HSP 1 Score: 77.8 bits (190), Expect = 4.510e-15
Identity = 44/76 (57.89%), Postives = 53/76 (69.74%), Query Frame = 3
Query:    3 FSRPMDIPEEGIEAAVAVMRSGRLFRYSCASAEGSQVALAEREFAEAAGARFAVGVNSCSSAILIALLGVGVQAGD 230
            F++   IPEE I+AAVAVMRSGRL RY+ A  E   VAL E+EFAEA GAR+A+   S  +AI  AL   GV+AGD
Sbjct:    9 FTQQEPIPEEAIDAAVAVMRSGRLHRYNVADGEAGDVALLEQEFAEAMGARYALATASGGAAIATALRAAGVRAGD 84          
BLAST of mRNA_H-paniculata_contig7627.15619.1 vs. uniprot
Match: A0A399J112_9RHOB (Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme n=1 Tax=Pseudopuniceibacterium sediminis TaxID=2211117 RepID=A0A399J112_9RHOB)

HSP 1 Score: 77.4 bits (189), Expect = 6.090e-15
Identity = 44/77 (57.14%), Postives = 54/77 (70.13%), Query Frame = 3
Query:    3 FSRPMDIPEEGIEAAVAVMRSGRLFRYSCASAEGSQVALAEREFAEAAGARFAVGVNSCSSAILIALLGVGVQAGDQ 233
            F++   IPEE IEAAVAVMRSGRL RY+ A+ E  + AL E+EFAE  GAR+A+ V S   AI  AL  VGV+ GD+
Sbjct:    9 FTQQEPIPEEAIEAAVAVMRSGRLHRYNTAAGEAGETALLEQEFAEMTGARYALAVASGGHAISTALRAVGVRPGDR 85          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7627.15619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSI3_ECTSI2.100e-2771.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3BR70_9VIRI7.810e-2566.23Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
A0A7S3FD09_9VIRI1.270e-2366.23Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
A0A7S4E6V5_9STRA3.160e-2367.53Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S3ZU99_9STRA1.180e-2267.53Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
K8ECV9_9CHLO7.840e-2263.64Aminotransferase, DegT/DnrJ/EryC1/StrS family prot... [more]
A0A7S0J159_9EUKA3.150e-1964.94Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
D7FMY1_ECTSI1.670e-1757.83Aminotransferase n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
A0A2E3H0W2_9RHOB4.510e-1557.89Aminotransferase n=1 Tax=Pseudooceanicola sp. TaxI... [more]
A0A399J112_9RHOB6.090e-1557.14Aminotransferase class I/II-fold pyridoxal phospha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7627contigH-paniculata_contig7627:5107..5339 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.5
Seed ortholog evalue3.4e-19
Seed eggNOG ortholog2880.D7FSI3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Aminotransferase, DegT DnrJ EryC1 StrS family protein
EggNOG OGs2QQV8@2759,COG0399@1
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size234
Cds size219
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930941.5955303-UTR-H-paniculata_contig7627:5106..51201622930941.5955303-UTR-H-paniculata_contig7627:5106..5120Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7627 5107..5120 +
1691481520.564294-UTR-H-paniculata_contig7627:5106..51201691481520.564294-UTR-H-paniculata_contig7627:5106..5120Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7627 5107..5120 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930941.6124284-CDS-H-paniculata_contig7627:5120..53391622930941.6124284-CDS-H-paniculata_contig7627:5120..5339Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7627 5121..5339 +
1691481520.57608-CDS-H-paniculata_contig7627:5120..53391691481520.57608-CDS-H-paniculata_contig7627:5120..5339Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7627 5121..5339 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7627.15619.1prot_H-paniculata_contig7627.15619.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7627 5121..5339 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7627.15619.1

>prot_H-paniculata_contig7627.15619.1 ID=prot_H-paniculata_contig7627.15619.1|Name=mRNA_H-paniculata_contig7627.15619.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
MDIPEEGIEAAVAVMRSGRLFRYSCASAEGSQVALAEREFAEAAGARFAV
GVNSCSSAILIALLGVGVQAGDQ
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mRNA from alignment at H-paniculata_contig7627:5107..5339+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7627.15619.1 ID=mRNA_H-paniculata_contig7627.15619.1|Name=mRNA_H-paniculata_contig7627.15619.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=233bp|location=Sequence derived from alignment at H-paniculata_contig7627:5107..5339+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTTCTCTCGACCAATGGACATCCCCGAGGAGGGCATTGAAGCTGCCGTT GCCGTGATGCGCAGCGGCCGACTCTTTCGGTATAGCTGCGCCTCCGCGGA AGGATCGCAAGTGGCGCTGGCCGAGCGAGAATTCGCCGAGGCCGCTGGCG CGCGCTTCGCGGTGGGCGTCAACTCGTGCTCTTCCGCGATCTTGATTGCA TTGCTGGGCGTGGGCGTGCAAGCAGGCGATCAA
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Coding sequence (CDS) from alignment at H-paniculata_contig7627:5107..5339+

>mRNA_H-paniculata_contig7627.15619.1 ID=mRNA_H-paniculata_contig7627.15619.1|Name=mRNA_H-paniculata_contig7627.15619.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig7627:5107..5339+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACATCCCCGAGGAGGGCATTGAAGCTGCCGTTGCCGTGATGCGCAG
CGGCCGACTCTTTCGGTATAGCTGCGCCTCCGCGGAAGGATCGCAAGTGG
CGCTGGCCGAGCGAGAATTCGCCGAGGCCGCTGGCGCGCGCTTCGCGGTG
GGCGTCAACTCGTGCTCTTCCGCGATCTTGATTGCATTGCTGGGCGTGGG
CGTGCAAGCAGGCGATCAAATGGACATCCCCGAGGAGGGCATTGAAGCTG
CCGTTGCCGTGATGCGCAGCGGCCGACTCTTTCGGTATAGCTGCGCCTCC
GCGGAAGGATCGCAAGTGGCGCTGGCCGAGCGAGAATTCGCCGAGGCCGC
TGGCGCGCGCTTCGCGGTGGGCGTCAACTCGTGCTCTTCCGCGATCTTGA
TTGCATTGCTGGGCGTGGGCGTGCAAGCAGGCGATCAA
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