mRNA_H-paniculata_contig762.15613.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig762.15613.1
Unique NamemRNA_H-paniculata_contig762.15613.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig762.15613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig762contigH-paniculata_contig762:14136..16028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size434
Cds size432
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig762.15613.1prot_H-paniculata_contig762.15613.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig762 14136..16028 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930940.8044841-CDS-H-paniculata_contig762:14135..142231622930940.8044841-CDS-H-paniculata_contig762:14135..14223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig762 14136..14223 +
1691481520.2783492-CDS-H-paniculata_contig762:14135..142231691481520.2783492-CDS-H-paniculata_contig762:14135..14223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig762 14136..14223 +
1622930940.8185675-CDS-H-paniculata_contig762:15076..153291622930940.8185675-CDS-H-paniculata_contig762:15076..15329Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig762 15077..15329 +
1691481520.286911-CDS-H-paniculata_contig762:15076..153291691481520.286911-CDS-H-paniculata_contig762:15076..15329Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig762 15077..15329 +
1622930940.8402896-CDS-H-paniculata_contig762:15937..160281622930940.8402896-CDS-H-paniculata_contig762:15937..16028Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig762 15938..16028 +
1691481520.294926-CDS-H-paniculata_contig762:15937..160281691481520.294926-CDS-H-paniculata_contig762:15937..16028Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig762 15938..16028 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig762.15613.1

>prot_H-paniculata_contig762.15613.1 ID=prot_H-paniculata_contig762.15613.1|Name=mRNA_H-paniculata_contig762.15613.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=144bp
NRCAVGAGEIEGDERRRRRRSRVTTEDAAGFPVTHEASTVDKITAAAAAP
KRPAPRHVQGEDRHRHRVGGATAGGDDGNGLDRGGRFRTDAKGRMDDGDV
AAGLGKDTGASARWVVPPLPSTRASGNTKYPDGYDRYRYTTDHH
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mRNA from alignment at H-paniculata_contig762:14136..16028+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig762.15613.1 ID=mRNA_H-paniculata_contig762.15613.1|Name=mRNA_H-paniculata_contig762.15613.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1893bp|location=Sequence derived from alignment at H-paniculata_contig762:14136..16028+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATCGTTGTGCGGTGGGGGCGGGCGAGATCGAGGGAGACGAGAGGAGAAG
GAGAAGGAGGAGCAGGGTAACGACGGAAGATGCTGCAGGTGTGTATGTAG
CTCTAAGCCAGGAGAGCCCGTCCAATGGAATTTTGGAATCAATCAACCGA
CCTTTTTTGTTCTTCGAGTACGAGAGATGGATACGTTTGCTGTATGGGGT
GTGGGGCATATTGTACTATCTGTAAGGTGTACAGGTGTACGTCTCTATAA
GTACATACAAGACAAAACAAGAAAATTCAAAGAACACAATTCTTTCCAAG
AAAAACTAGTGTGTGCTCTTGTGTGTTTTTGATTTTCTGTGGAGAATGGT
TTCCTCCACTGTTTCTTGGCGTTTTTCTGAAAACAAAGCGAAGGTGGGTT
CTTGAATGAATCACACGAGAGTTCATGGAACGTAAGTAGAAGAAACCGTT
TGAAGAGAAATTTCGTAGAGATTTTCCTTTTTCTTTTTTCAAGGTGTTTT
CTTCCGTTTTTTTTTTTTCTTTTTTAAGCTTCTGAATGACCGGCGCAAAA
GGAGAAATATTGGTGATTCCACCTATTTGGTCGGTCATATTCCAGGCAGT
TGCTTTGTCATATATTCTAAAAATATATAAGGCGCCCGGCTCGATTTCGA
CTTGAAAGAAAAAAAAAGAACAGCGAGTATGATGTAGTTTTGATGTACCT
TGTTCTCCTCGAGATGTTCTGTCTTCATTGTCACAAGAAAAGTAGAAAAA
AGTGTGCTATGCCCGCAGATTTACTGTCTTCTTTCCCCTACACTCGCGCG
CGCCTATACATGTGAACAATAACAATAATGTTCTCACATATCTTACCAAT
ATTCCCCGTCTACTAAAATCCTAAGCTTGTACATGCAGCAGCAACAAGAA
GACAACATATCTGTGAATACTCGACCAATCATAACACGCAGGGTTTCCAG
TGACTCACGAGGCTTCGACAGTAGACAAGATCACCGCCGCCGCAGCCGCG
CCCAAGAGACCAGCTCCTCGGCACGTACAAGGAGAAGACCGCCACCGGCA
TCGAGTTGGAGGGGCGACGGCCGGCGGCGACGATGGCAATGGGCTTGACC
GAGGCGGCCGTTTCAGGACAGATGCGAAGGGAAGAATGGACGATGGAGAT
GTGGCTGCGGGATTGGGGAAGGATACTGGGGCGTCGGCACGATGGTAAGT
GGCGGAAGGCACTCATGTTCAGCATGTCTCAGTTGTTAAACAATTGACCG
CGCGTCCTCGAGAAGACGAAAAGGCTTTTTTCGTCTATCAAAGCGATTTC
CGTTCACTCACCTACCAAGCAAGCCTCATTCAGACACAAGTCTCTCAGCC
CACTTCCACAGTTAGTAGTCTAGCATCTAGGGCATGCGAAACTTGATTAC
CCCATTGAACAATCCCTACTCACCTACTCCCCAACCTACCACGGCATTTG
GTTTTGTAGTAAGTCATGATTTCTTCCGTTCATCACGAAAGAGTATTTCT
CAACGGTCCCCGAAACAATCGACGTATTGCTGTGCCAAGTCGTTCCAACA
TCTATCTACTGTACCCCGTCATATTCTTCGAAGTATGCTCTCATGACTGT
ACATAGCTGTGAGGTTAGGGCGCACAAATTCGGGCGTGAGCGGTGCCATG
CGTAATGCCTCCAGCCGCTGAGTGCTGAAGTATCTTTTGCCCCCTGAGTG
CATGCCGTATAACCTTGACGGTGAGTACCATCATGTTTGTCTTTTGACTG
TTGCTAAGCGATCTTTTCTTCTCCCCCCCCCCCCCCCCGCTTTCCCCCTT
AGGGTGGTACCTCCCTTGCCCAGCACGCGTGCAAGCGGCAATACCAAATA
CCCGGACGGTTACGACCGTTACCGCTACACCACCGATCACCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig762:14136..16028+

>mRNA_H-paniculata_contig762.15613.1 ID=mRNA_H-paniculata_contig762.15613.1|Name=mRNA_H-paniculata_contig762.15613.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at H-paniculata_contig762:14136..16028+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATCGTTGTGCGGTGGGGGCGGGCGAGATCGAGGGAGACGAGAGGAGAAG
GAGAAGGAGGAGCAGGGTAACGACGGAAGATGCTGCAGAATCGTTGTGCG
GTGGGGGCGGGCGAGATCGAGGGAGACGAGAGGAGAAGGAGAAGGAGGAG
CAGGGTAACGACGGAAGATGCTGCAGGGTTTCCAGTGACTCACGAGGCTT
CGACAGTAGACAAGATCACCGCCGCCGCAGCCGCGCCCAAGAGACCAGCT
CCTCGGCACGTACAAGGAGAAGACCGCCACCGGCATCGAGTTGGAGGGGC
GACGGCCGGCGGCGACGATGGCAATGGGCTTGACCGAGGCGGCCGTTTCA
GGACAGATGCGAAGGGAAGAATGGACGATGGAGATGTGGCTGCGGGATTG
GGGAAGGATACTGGGGCGTCGGCACGATGGGTTTCCAGTGACTCACGAGG
CTTCGACAGTAGACAAGATCACCGCCGCCGCAGCCGCGCCCAAGAGACCA
GCTCCTCGGCACGTACAAGGAGAAGACCGCCACCGGCATCGAGTTGGAGG
GGCGACGGCCGGCGGCGACGATGGCAATGGGCTTGACCGAGGCGGCCGTT
TCAGGACAGATGCGAAGGGAAGAATGGACGATGGAGATGTGGCTGCGGGA
TTGGGGAAGGATACTGGGGCGTCGGCACGATGGGTGGTACCTCCCTTGCC
CAGCACGCGTGCAAGCGGCAATACCAAATACCCGGACGGTTACGACCGTT
ACCGCTACACCACCGATCACCACGGTGGTACCTCCCTTGCCCAGCACGCG
TGCAAGCGGCAATACCAAATACCCGGACGGTTACGACCGTTACCGCTACA
CCACCGATCACCAC
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