mRNA_H-paniculata_contig76161.15609.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig76161.15609.1
Unique NamemRNA_H-paniculata_contig76161.15609.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig76161.15609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig76161contigH-paniculata_contig76161:34..348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size261
Cds size261
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930940.6393557-CDS-H-paniculata_contig76161:33..2251622930940.6393557-CDS-H-paniculata_contig76161:33..225Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig76161 34..225 +
1691481520.2334917-CDS-H-paniculata_contig76161:33..2251691481520.2334917-CDS-H-paniculata_contig76161:33..225Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig76161 34..225 +
1622930940.655748-CDS-H-paniculata_contig76161:279..3481622930940.655748-CDS-H-paniculata_contig76161:279..348Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig76161 280..348 +
1691481520.24305-CDS-H-paniculata_contig76161:279..3481691481520.24305-CDS-H-paniculata_contig76161:279..348Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig76161 280..348 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig76161.15609.1prot_H-paniculata_contig76161.15609.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig76161 34..348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig76161.15609.1

>prot_H-paniculata_contig76161.15609.1 ID=prot_H-paniculata_contig76161.15609.1|Name=mRNA_H-paniculata_contig76161.15609.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
NVYCRRCGERGHDLNACPQLVDEDACLAEAETDIELEEALKFDVGEDEFI
AAYIASTSTTGKEEIWICDNGATKHMTHNSDFLFDY*
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mRNA from alignment at H-paniculata_contig76161:34..348+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig76161.15609.1 ID=mRNA_H-paniculata_contig76161.15609.1|Name=mRNA_H-paniculata_contig76161.15609.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=315bp|location=Sequence derived from alignment at H-paniculata_contig76161:34..348+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGTATACTGTCGGCGATGTGGTGAGCGTGGTCACGACTTGAACGCGTG
CCCCCAGCTCGTCGATGAAGATGCTTGTTTGGCTGAAGCGGAAACGGATA
TTGAACTTGAAGAGGCGCTCAAGTTTGATGTGGGCGAAGACGAGTTCATC
GCGGCATACATCGCGTCGACTTCCACCACAGGCAAGGAAGAGGTTTTGTC
TGTAGACTCTGAGGGGTTAGAATATCGTGAAGTGGGGGGGATGGAGATCT
GGATATGTGATAATGGTGCAACGAAACACATGACCCATAATTCAGATTTT
CTTTTTGATTACTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig76161:34..348+

>mRNA_H-paniculata_contig76161.15609.1 ID=mRNA_H-paniculata_contig76161.15609.1|Name=mRNA_H-paniculata_contig76161.15609.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig76161:34..348+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGTATACTGTCGGCGATGTGGTGAGCGTGGTCACGACTTGAACGCGTG
CCCCCAGCTCGTCGATGAAGATGCTTGTTTGGCTGAAGCGGAAACGGATA
TTGAACTTGAAGAGGCGCTCAAGTTTGATGTGGGCGAAGACGAGTTCATC
GCGGCATACATCGCGTCGACTTCCACCACAGGCAAGGAAGAGAACGTATA
CTGTCGGCGATGTGGTGAGCGTGGTCACGACTTGAACGCGTGCCCCCAGC
TCGTCGATGAAGATGCTTGTTTGGCTGAAGCGGAAACGGATATTGAACTT
GAAGAGGCGCTCAAGTTTGATGTGGGCGAAGACGAGTTCATCGCGGCATA
CATCGCGTCGACTTCCACCACAGGCAAGGAAGAGATCTGGATATGTGATA
ATGGTGCAACGAAACACATGACCCATAATTCAGATTTTCTTTTTGATTAC
TAGATCTGGATATGTGATAATGGTGCAACGAAACACATGACCCATAATTC
AGATTTTCTTTTTGATTACTAG
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