mRNA_H-paniculata_contig76130.15606.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig76130.15606.1
Unique NamemRNA_H-paniculata_contig76130.15606.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig76130.15606.1 vs. uniprot
Match: H6S3Y6_PLAVT (Inositol-3-phosphate synthase (Fragment) n=1 Tax=Plasmopara viticola TaxID=143451 RepID=H6S3Y6_PLAVT)

HSP 1 Score: 118 bits (296), Expect = 5.580e-32
Identity = 57/67 (85.07%), Postives = 62/67 (92.54%), Query Frame = 1 
Query:   19 VSAGIKPTSIVSYNHLGNNDGRNLSAPQQFRSKEISKSNVVDDMVDSNRLLYAKDEHPDHVVSLNEI 219
            VSAGIKPTSIVSYNHLGNNDG+NLSAPQQFRSKEISKSNVVDDMV SNRLLY ++EHPDHVV +  +
Sbjct:    3 VSAGIKPTSIVSYNHLGNNDGKNLSAPQQFRSKEISKSNVVDDMVASNRLLYKENEHPDHVVVIKYV 69
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BLAST of mRNA_H-paniculata_contig76130.15606.1 vs. uniprot
Match: A0A812VXU1_SYMMI (Inositol-3-phosphate synthase (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VXU1_SYMMI)

HSP 1 Score: 118 bits (296), Expect = 3.750e-31
Identity = 57/67 (85.07%), Postives = 61/67 (91.04%), Query Frame = 1 
Query:   19 VSAGIKPTSIVSYNHLGNNDGRNLSAPQQFRSKEISKSNVVDDMVDSNRLLYAKDEHPDHVVSLNEI 219
            VSAGIKP SIVSYNHLGNNDG+NLSAP+QFRSKEISKSNVVDDMVDSNRLLYA  EHPDHVV +  +
Sbjct:   68 VSAGIKPRSIVSYNHLGNNDGKNLSAPEQFRSKEISKSNVVDDMVDSNRLLYAPGEHPDHVVVIKYV 134
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BLAST of mRNA_H-paniculata_contig76130.15606.1 vs. uniprot
Match: G8GIC2_AEDAL (Inositol-3-phosphate synthase (Fragment) n=1 Tax=Aedes albopictus TaxID=7160 RepID=G8GIC2_AEDAL)

HSP 1 Score: 113 bits (282), Expect = 7.910e-31
Identity = 54/67 (80.60%), Postives = 58/67 (86.57%), Query Frame = 1 
Query:   19 VSAGIKPTSIVSYNHLGNNDGRNLSAPQQFRSKEISKSNVVDDMVDSNRLLYAKDEHPDHVVSLNEI 219
            VSAGIKP SIVSYNHLGNNDG+NLSAPQQFRSKEISKSNVVDDMV SN +LY  DEHPDH V +  +
Sbjct:   20 VSAGIKPVSIVSYNHLGNNDGKNLSAPQQFRSKEISKSNVVDDMVASNNILYKPDEHPDHCVVIKYV 86
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BLAST of mRNA_H-paniculata_contig76130.15606.1 vs. uniprot
Match: A0A662X127_9STRA (Inositol-3-phosphate synthase (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X127_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.440e-30
Identity = 57/67 (85.07%), Postives = 61/67 (91.04%), Query Frame = 1 
Query:   19 VSAGIKPTSIVSYNHLGNNDGRNLSAPQQFRSKEISKSNVVDDMVDSNRLLYAKDEHPDHVVSLNEI 219
            VSAGIKPTSIVSYNHLGNNDG+NLSAPQQFRSKEISKSNVVDDMV SNRLLY + EHPDHVV +  +
Sbjct:  114 VSAGIKPTSIVSYNHLGNNDGKNLSAPQQFRSKEISKSNVVDDMVASNRLLYKEGEHPDHVVVIKYV 180
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BLAST of mRNA_H-paniculata_contig76130.15606.1 vs. uniprot
Match: D8LQB3_ECTSI (Inositol-3-phosphate synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQB3_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 3.330e-30
Identity = 57/67 (85.07%), Postives = 62/67 (92.54%), Query Frame = 1 
Query:   19 VSAGIKPTSIVSYNHLGNNDGRNLSAPQQFRSKEISKSNVVDDMVDSNRLLYAKDEHPDHVVSLNEI 219
            VSAGIKPTSIVSYNHLGNNDGRNLSAPQQFRSKEISKSNVVDDMVDSN++LY + EHPDHVV +  +
Sbjct:  321 VSAGIKPTSIVSYNHLGNNDGRNLSAPQQFRSKEISKSNVVDDMVDSNKMLYKEGEHPDHVVVIKYV 387
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BLAST of mRNA_H-paniculata_contig76130.15606.1 vs. uniprot
Match: A0A7S2LGG7_9STRA (Inositol-3-phosphate synthase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LGG7_9STRA)

HSP 1 Score: 114 bits (285), Expect = 3.750e-30
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 1 
Query:   19 VSAGIKPTSIVSYNHLGNNDGRNLSAPQQFRSKEISKSNVVDDMVDSNRLLYAKDEHPDHVVSLNEI 219
            VSAGIKP SIVSYNHLGNNDG+NLSAP QFRSKEISKSNVVDDMV SNR+L+ +DEHPDHVV +  +
Sbjct:    6 VSAGIKPVSIVSYNHLGNNDGKNLSAPSQFRSKEISKSNVVDDMVASNRILFEEDEHPDHVVVIKYV 72
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BLAST of mRNA_H-paniculata_contig76130.15606.1 vs. uniprot
Match: W7TSC4_9STRA (Inositol-3-phosphate synthase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSC4_9STRA)

HSP 1 Score: 120 bits (300), Expect = 4.250e-30
Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 1 
Query:   19 VSAGIKPTSIVSYNHLGNNDGRNLSAPQQFRSKEISKSNVVDDMVDSNRLLYAKDEHPDHVVSLNEI 219
            VSAGIKPTSIVSYNHLGNNDG+NLSAPQ FRSKEISKSNVVDDMV SNRLLYA+DEHPDHVV +  +
Sbjct:  326 VSAGIKPTSIVSYNHLGNNDGKNLSAPQTFRSKEISKSNVVDDMVASNRLLYAEDEHPDHVVVIKYV 392
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BLAST of mRNA_H-paniculata_contig76130.15606.1 vs. uniprot
Match: A0A2P4Y6M5_9STRA (Inositol-3-phosphate synthase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y6M5_9STRA)

HSP 1 Score: 118 bits (296), Expect = 4.410e-30
Identity = 57/67 (85.07%), Postives = 62/67 (92.54%), Query Frame = 1 
Query:   19 VSAGIKPTSIVSYNHLGNNDGRNLSAPQQFRSKEISKSNVVDDMVDSNRLLYAKDEHPDHVVSLNEI 219
            VSAGIKPTSIVSYNHLGNNDG+NLSAPQQFRSKEISKSNVVDDMV SNRLLY ++EHPDHVV +  +
Sbjct:  227 VSAGIKPTSIVSYNHLGNNDGKNLSAPQQFRSKEISKSNVVDDMVASNRLLYKENEHPDHVVVIKYV 293
[Close]
BLAST of mRNA_H-paniculata_contig76130.15606.1 vs. uniprot
Match: A0A4D9DH12_9STRA (Inositol-3-phosphate synthase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DH12_9STRA)

HSP 1 Score: 120 bits (300), Expect = 6.040e-30
Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 1 
Query:   19 VSAGIKPTSIVSYNHLGNNDGRNLSAPQQFRSKEISKSNVVDDMVDSNRLLYAKDEHPDHVVSLNEI 219
            VSAGIKPTSIVSYNHLGNNDG+NLSAPQ FRSKEISKSNVVDDMV SNRLLYA+DEHPDHVV +  +
Sbjct:  536 VSAGIKPTSIVSYNHLGNNDGKNLSAPQTFRSKEISKSNVVDDMVASNRLLYAEDEHPDHVVVIKYV 602
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BLAST of mRNA_H-paniculata_contig76130.15606.1 vs. uniprot
Match: UPI0012D38BE4 (inositol-3-phosphate synthase n=1 Tax=Contarinia nasturtii TaxID=265458 RepID=UPI0012D38BE4)

HSP 1 Score: 119 bits (297), Expect = 8.950e-30
Identity = 56/67 (83.58%), Postives = 61/67 (91.04%), Query Frame = 1 
Query:   19 VSAGIKPTSIVSYNHLGNNDGRNLSAPQQFRSKEISKSNVVDDMVDSNRLLYAKDEHPDHVVSLNEI 219
            VSAGIKP SIVSYNHLGNNDG+NLS+PQQFRSKEISKSNVVDDMV SN +LYAKDEHPDHVV +  +
Sbjct:  320 VSAGIKPVSIVSYNHLGNNDGKNLSSPQQFRSKEISKSNVVDDMVSSNNILYAKDEHPDHVVVIKYV 386
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig76130.15606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H6S3Y6_PLAVT5.580e-3285.07Inositol-3-phosphate synthase (Fragment) n=1 Tax=P... [more]
A0A812VXU1_SYMMI3.750e-3185.07Inositol-3-phosphate synthase (Fragment) n=1 Tax=S... [more]
G8GIC2_AEDAL7.910e-3180.60Inositol-3-phosphate synthase (Fragment) n=1 Tax=A... [more]
A0A662X127_9STRA1.440e-3085.07Inositol-3-phosphate synthase (Fragment) n=2 Tax=N... [more]
D8LQB3_ECTSI3.330e-3085.07Inositol-3-phosphate synthase n=2 Tax=Ectocarpus T... [more]
A0A7S2LGG7_9STRA3.750e-3080.60Inositol-3-phosphate synthase n=1 Tax=Skeletonema ... [more]
W7TSC4_9STRA4.250e-3086.57Inositol-3-phosphate synthase n=1 Tax=Nannochlorop... [more]
A0A2P4Y6M5_9STRA4.410e-3085.07Inositol-3-phosphate synthase (Fragment) n=1 Tax=P... [more]
A0A4D9DH12_9STRA6.040e-3086.57Inositol-3-phosphate synthase n=1 Tax=Nannochlorop... [more]
UPI0012D38BE48.950e-3083.58inositol-3-phosphate synthase n=1 Tax=Contarinia n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig76130contigH-paniculata_contig76130:174..392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.5
Seed ortholog evalue2.7e-24
Seed eggNOG ortholog164328.Phyra71157
Preferred nameISYNA1
KEGG rclassRC01804
KEGG koko:K01858
KEGG ReactionR07324
KEGG Pathwayko00521,ko00562,ko01100,ko01130,map00521,map00562,map01100,map01130
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004512,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006020,GO:0006021,GO:0006066,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016051,GO:0016853,GO:0016872,GO:0019637,GO:0019751,GO:0034637,GO:0043647,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046165,GO:0046173,GO:0071704,GO:1901576,GO:1901615,GO:1901617
EggNOG free text desc.Myo-inositol-1-phosphate synthase
EggNOG OGs3QDWU@4776,COG1260@1,KOG0693@2759
EC5.5.1.4
COG Functional cat.I
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size219
Cds size219
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930940.3840194-CDS-H-paniculata_contig76130:173..3921622930940.3840194-CDS-H-paniculata_contig76130:173..392Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig76130 174..392 +
1691481520.1451705-CDS-H-paniculata_contig76130:173..3921691481520.1451705-CDS-H-paniculata_contig76130:173..392Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig76130 174..392 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig76130.15606.1prot_H-paniculata_contig76130.15606.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig76130 174..392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig76130.15606.1

>prot_H-paniculata_contig76130.15606.1 ID=prot_H-paniculata_contig76130.15606.1|Name=mRNA_H-paniculata_contig76130.15606.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
MEKKKKVSAGIKPTSIVSYNHLGNNDGRNLSAPQQFRSKEISKSNVVDDM
VDSNRLLYAKDEHPDHVVSLNEI
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mRNA from alignment at H-paniculata_contig76130:174..392+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig76130.15606.1 ID=mRNA_H-paniculata_contig76130.15606.1|Name=mRNA_H-paniculata_contig76130.15606.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=219bp|location=Sequence derived from alignment at H-paniculata_contig76130:174..392+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAAAAAAAAAAAAGGTGAGTGCAGGAATTAAACCGACGTCGATTGT
GTCTTACAACCACCTCGGCAACAACGACGGGCGAAATTTGTCGGCGCCGC
AGCAATTCCGCTCCAAGGAGATCAGCAAGTCCAACGTAGTAGATGACATG
GTTGACTCCAACCGTCTACTGTACGCGAAGGATGAGCACCCGGACCACGT
GGTGAGTTTAAATGAAATA
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Coding sequence (CDS) from alignment at H-paniculata_contig76130:174..392+

>mRNA_H-paniculata_contig76130.15606.1 ID=mRNA_H-paniculata_contig76130.15606.1|Name=mRNA_H-paniculata_contig76130.15606.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig76130:174..392+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAAAAAAAAAAAAGGTGAGTGCAGGAATTAAACCGACGTCGATTGT
GTCTTACAACCACCTCGGCAACAACGACGGGCGAAATTTGTCGGCGCCGC
AGCAATTCCGCTCCAAGGAGATCAGCAAGTCCAACGTAGTAGATGACATG
GTTGACTCCAACCGTCTACTGTACGCGAAGGATGAGCACCCGGACCACGT
GGTGAGTTTAAATGAAATAATGGAAAAAAAAAAAAAGGTGAGTGCAGGAA
TTAAACCGACGTCGATTGTGTCTTACAACCACCTCGGCAACAACGACGGG
CGAAATTTGTCGGCGCCGCAGCAATTCCGCTCCAAGGAGATCAGCAAGTC
CAACGTAGTAGATGACATGGTTGACTCCAACCGTCTACTGTACGCGAAGG
ATGAGCACCCGGACCACGTGGTGAGTTTAAATGAAATA
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