mRNA_H-paniculata_contig76104.15603.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig76104.15603.1
Unique NamemRNA_H-paniculata_contig76104.15603.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig76104.15603.1 vs. uniprot
Match: A0A1M2VH23_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VH23_TRAPU)

HSP 1 Score: 68.9 bits (167), Expect = 7.460e-13
Identity = 34/91 (37.36%), Postives = 51/91 (56.04%), Query Frame = 1
Query:   34 EPKNHQEAQASPEWKHWQRAEEVEMQGLIDNGAWTQVERPKNKLVVSTMMIYKRKIDEDGKVEKYTCRLVAHGNRQIKGIHFQEAWVPCTR 306
            EP+   EAQASP+W HW+ A   E+  L  +  +  VE P N  +V +  +++ K D +G + +Y  RLVA G  Q+ GI F E + P  +
Sbjct:   12 EPRTLAEAQASPDWPHWENAIAKEIDNLRKHDTYDLVEPPHNTNIVGSRFVFRIKRDAEGSITQYKARLVAQGFTQMPGIDFNETFAPVAK 102          
BLAST of mRNA_H-paniculata_contig76104.15603.1 vs. uniprot
Match: A0A182HAC3_AEDAL (Integrase catalytic domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182HAC3_AEDAL)

HSP 1 Score: 70.1 bits (170), Expect = 7.360e-12
Identity = 33/88 (37.50%), Postives = 54/88 (61.36%), Query Frame = 1
Query:   34 EPKNHQEAQASPEWKHWQRAEEVEMQGLIDNGAWTQVERPKNKLVVSTMMIYKRKIDEDGKVEKYTCRLVAHGNRQIKGIHFQEAWVP 297
            EP  ++EA  S E + W +A   E Q LIDN  W  V+ P ++ ++ +  ++KRK++ DGKV+++  RLVA G  Q  G+ F +++ P
Sbjct:  349 EPTTYEEAVGSEEKEKWIKAMSEEYQSLIDNDTWELVDPPTDRNIIGSRWVFKRKLNADGKVDRFKARLVAQGFAQRVGVDFDDSFAP 436          
BLAST of mRNA_H-paniculata_contig76104.15603.1 vs. uniprot
Match: A0A177U1E5_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U1E5_9BASI)

HSP 1 Score: 68.6 bits (166), Expect = 2.600e-11
Identity = 29/92 (31.52%), Postives = 52/92 (56.52%), Query Frame = 1
Query:   31 VEPKNHQEAQASPEWKHWQRAEEVEMQGLIDNGAWTQVERPKNKLVVSTMMIYKRKIDEDGKVEKYTCRLVAHGNRQIKGIHFQEAWVPCTR 306
            +EP  + EA+   +W+ W +A + +M  L+    W  V+ P  +  + +  +YK K+DE+GK +++  RLVA G  Q+ G+ + E + P  R
Sbjct:  730 LEPATYAEARRRSDWEKWNKAMDEQMDALVGMHTWDLVQLPPGRKAIGSRWVYKLKLDEEGKADRWKARLVAQGFTQVAGVDYFETFAPVAR 821          
BLAST of mRNA_H-paniculata_contig76104.15603.1 vs. uniprot
Match: A0A0J7N2F4_LASNI (Copia-like retrotransposable protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7N2F4_LASNI)

HSP 1 Score: 67.8 bits (164), Expect = 4.450e-11
Identity = 35/91 (38.46%), Postives = 55/91 (60.44%), Query Frame = 1
Query:   37 PKNHQEAQASPEWKHWQRAEEVEMQGLIDNGAWTQVER-PKNKLVVSTMMIYKRKIDEDGKVEKYTCRLVAHGNRQIKGIHFQEAWVPCTR 306
            P++ +EA   PE K WQ A + E+  +  N  W  V++ PK+   VS+ +++K+K+D  G++EKY  RLVA G  Q  GI ++E + P  R
Sbjct:  264 PQSIEEALTGPEAKEWQMAIDEEIAAMEKNNTWKTVDQLPKDHKAVSSKIVFKKKLDNKGRIEKYKDRLVARGFTQRPGIDYKETFAPVIR 354          
BLAST of mRNA_H-paniculata_contig76104.15603.1 vs. uniprot
Match: A0A1X7VXK3_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VXK3_AMPQE)

HSP 1 Score: 63.9 bits (154), Expect = 1.930e-10
Identity = 36/86 (41.86%), Postives = 49/86 (56.98%), Query Frame = 1
Query:   34 EPKNHQEAQASPEWKHWQRAEEVEMQGLIDNGAWTQVERPKNKLVVSTMMIYKRKIDEDGKVEKYTCRLVAHGNRQIKGIHFQEAW 291
            EP    EA +S E   W+ A E EM+ L  N  +  VE PKNK V+ +  I++RKI+ DG VE+Y  RLVA    Q  G+ + E +
Sbjct:    5 EPSTINEALSSSEADKWKEAMEREMESLKANDVYDLVELPKNKEVIGSKWIFRRKINADGSVERYKARLVAQRFSQTHGLDYDETF 90          
BLAST of mRNA_H-paniculata_contig76104.15603.1 vs. uniprot
Match: A0A6L2P5K6_TANCI (Integrase catalytic domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2P5K6_TANCI)

HSP 1 Score: 65.9 bits (159), Expect = 2.230e-10
Identity = 31/91 (34.07%), Postives = 51/91 (56.04%), Query Frame = 1
Query:   34 EPKNHQEAQASPEWKHWQRAEEVEMQGLIDNGAWTQVERPKNKLVVSTMMIYKRKIDEDGKVEKYTCRLVAHGNRQIKGIHFQEAWVPCTR 306
            +PK  +EA + P W      + + ++ L +NG W  ++ P  K  +    IYKRK+  DG V++   RLV  GNRQ+KG+ ++E + P  +
Sbjct:  469 DPKGFKEAISDPGW-----CDAMNLRALEENGTWELIDLPSGKKAIRIHWIYKRKLKSDGYVDRKKARLVIQGNRQLKGVDYEETFAPVAK 554          
BLAST of mRNA_H-paniculata_contig76104.15603.1 vs. uniprot
Match: A0A151T9B6_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T9B6_CAJCA)

HSP 1 Score: 65.5 bits (158), Expect = 3.100e-10
Identity = 33/89 (37.08%), Postives = 51/89 (57.30%), Query Frame = 1
Query:   31 VEPKNHQEAQASPEWKHWQRAEEVEMQGLIDNGAWTQVERPKNKLVVSTMMIYKRKIDEDGKVEKYTCRLVAHGNRQIKGIHFQEAWVP 297
             EP N +EA    +W++   A ++E++ +  NG W  ++RPK   VV    +YK K++E GKV+K+  RLV  G  Q  GI + E + P
Sbjct:  787 AEPLNFEEAVKIEKWRN---AMDIEIEAIEKNGTWELIDRPKGAKVVGVKWVYKTKLNEKGKVDKFKARLVVKGYAQQYGIDYTEVFAP 872          
BLAST of mRNA_H-paniculata_contig76104.15603.1 vs. uniprot
Match: A0A182H4B5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182H4B5_AEDAL)

HSP 1 Score: 64.7 bits (156), Expect = 5.620e-10
Identity = 33/93 (35.48%), Postives = 50/93 (53.76%), Query Frame = 1
Query:   28 PVEPKNHQEAQASPEWKHWQRAEEVEMQGLIDNGAWTQVERPKNKLVVSTMMIYKRKIDEDGKVEKYTCRLVAHGNRQIKGIHFQEAWVPCTR 306
            PVEP++++EA    E   W  A + E+    +N  W  V+ P  K  +    IYKRK+DE G++  Y  RLVA G+ Q  G+ + E + P  +
Sbjct:  110 PVEPRSYKEATTGAESAKWIAAMKDELVSHEENKTWNLVKLPPGKKAIGCRWIYKRKLDEHGRLSSYKARLVAQGHSQRFGLDYDEVFAPVAK 202          
BLAST of mRNA_H-paniculata_contig76104.15603.1 vs. uniprot
Match: UPI000900F32D (uncharacterized protein LOC109147109 n=1 Tax=Ipomoea nil TaxID=35883 RepID=UPI000900F32D)

HSP 1 Score: 62.0 bits (149), Expect = 1.140e-9
Identity = 32/88 (36.36%), Postives = 46/88 (52.27%), Query Frame = 1
Query:   34 EPKNHQEAQASPEWKHWQRAEEVEMQGLIDNGAWTQVERPKNKLVVSTMMIYKRKIDEDGKVEKYTCRLVAHGNRQIKGIHFQEAWVP 297
            EP    EA  +P   HW+ A   E+Q L D+G W   +       +    +YK K + DG +E+Y  RLV  G+RQIKG+ + E + P
Sbjct:   80 EPTLFSEAVQAP---HWREAMRQELQSLEDDGTWILEDLLPGHKAIDNKWVYKVKYNADGSIERYKARLVVQGDRQIKGVDYNETFAP 164          
BLAST of mRNA_H-paniculata_contig76104.15603.1 vs. uniprot
Match: A0A182G9H3_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182G9H3_AEDAL)

HSP 1 Score: 62.4 bits (150), Expect = 3.410e-9
Identity = 33/91 (36.26%), Postives = 49/91 (53.85%), Query Frame = 1
Query:   34 EPKNHQEAQASPEWKHWQRAEEVEMQGLIDNGAWTQVERPKNKLVVSTMMIYKRKIDEDGKVEKYTCRLVAHGNRQIKGIHFQEAWVPCTR 306
            EP+  +EA   PE + W+ A E E+Q   +N  W  V  P  ++ +    I+KR++DE GKV +Y  RLVA G  Q  G  + E + P  +
Sbjct:  137 EPRTIKEALDGPESELWKAAIEEELQSHKENCTWNVVPLPSGRITIGCKWIFKRRMDESGKVVRYKARLVAQGFTQKIGTDYDEVFAPVVK 227          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig76104.15603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1M2VH23_TRAPU7.460e-1337.36Retrovirus-related Pol polyprotein from transposon... [more]
A0A182HAC3_AEDAL7.360e-1237.50Integrase catalytic domain-containing protein n=1 ... [more]
A0A177U1E5_9BASI2.600e-1131.52Integrase catalytic domain-containing protein n=2 ... [more]
A0A0J7N2F4_LASNI4.450e-1138.46Copia-like retrotransposable protein n=1 Tax=Lasiu... [more]
A0A1X7VXK3_AMPQE1.930e-1041.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6L2P5K6_TANCI2.230e-1034.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A151T9B6_CAJCA3.100e-1037.08Retrovirus-related Pol polyprotein from transposon... [more]
A0A182H4B5_AEDAL5.620e-1035.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI000900F32D1.140e-936.36uncharacterized protein LOC109147109 n=1 Tax=Ipomo... [more]
A0A182G9H3_AEDAL3.410e-936.26Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig76104contigH-paniculata_contig76104:269..574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score74.3
Seed ortholog evalue3.6e-11
Seed eggNOG ortholog15368.BRADI2G06305.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs37V5Q@33090,3GFFK@35493,3IKJW@38820,3M7B5@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size306
Cds size306
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930939.9234798-CDS-H-paniculata_contig76104:268..5741622930939.9234798-CDS-H-paniculata_contig76104:268..574Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig76104 269..574 +
1691481519.979525-CDS-H-paniculata_contig76104:268..5741691481519.979525-CDS-H-paniculata_contig76104:268..574Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig76104 269..574 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig76104.15603.1prot_H-paniculata_contig76104.15603.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig76104 269..574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig76104.15603.1

>prot_H-paniculata_contig76104.15603.1 ID=prot_H-paniculata_contig76104.15603.1|Name=mRNA_H-paniculata_contig76104.15603.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
MPEELRGDLPVEPKNHQEAQASPEWKHWQRAEEVEMQGLIDNGAWTQVER
PKNKLVVSTMMIYKRKIDEDGKVEKYTCRLVAHGNRQIKGIHFQEAWVPC
TR
back to top

mRNA from alignment at H-paniculata_contig76104:269..574+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig76104.15603.1 ID=mRNA_H-paniculata_contig76104.15603.1|Name=mRNA_H-paniculata_contig76104.15603.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=306bp|location=Sequence derived from alignment at H-paniculata_contig76104:269..574+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCGAAGAACTGAGGGGCGACCTCCCCGTGGAACCCAAGAATCACCA GGAGGCGCAGGCGTCGCCGGAGTGGAAACACTGGCAAAGAGCGGAGGAAG TCGAGATGCAAGGCCTAATCGACAACGGGGCTTGGACGCAAGTGGAGCGC CCGAAGAATAAGCTGGTCGTGAGCACGATGATGATCTACAAAAGAAAAAT CGACGAGGACGGAAAAGTGGAGAAATATACGTGCCGCCTGGTCGCCCACG GAAACCGTCAGATCAAGGGCATTCACTTCCAGGAAGCTTGGGTTCCCTGC ACCCGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig76104:269..574+

>mRNA_H-paniculata_contig76104.15603.1 ID=mRNA_H-paniculata_contig76104.15603.1|Name=mRNA_H-paniculata_contig76104.15603.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig76104:269..574+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCGAAGAACTGAGGGGCGACCTCCCCGTGGAACCCAAGAATCACCA
GGAGGCGCAGGCGTCGCCGGAGTGGAAACACTGGCAAAGAGCGGAGGAAG
TCGAGATGCAAGGCCTAATCGACAACGGGGCTTGGACGCAAGTGGAGCGC
CCGAAGAATAAGCTGGTCGTGAGCACGATGATGATCTACAAAAGAAAAAT
CGACGAGGACGGAAAAGTGGAGAAATATACGTGCCGCCTGGTCGCCCACG
GAAACCGTCAGATCAAGGGCATTCACTTCCAGGAAGCTTGGGTTCCCTGC
ACCCGCATGCCCGAAGAACTGAGGGGCGACCTCCCCGTGGAACCCAAGAA
TCACCAGGAGGCGCAGGCGTCGCCGGAGTGGAAACACTGGCAAAGAGCGG
AGGAAGTCGAGATGCAAGGCCTAATCGACAACGGGGCTTGGACGCAAGTG
GAGCGCCCGAAGAATAAGCTGGTCGTGAGCACGATGATGATCTACAAAAG
AAAAATCGACGAGGACGGAAAAGTGGAGAAATATACGTGCCGCCTGGTCG
CCCACGGAAACCGTCAGATCAAGGGCATTCACTTCCAGGAAGCTTGGGTT
CCCTGCACCCGC
back to top