mRNA_H-paniculata_contig75945.15586.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig75945.15586.1
Unique NamemRNA_H-paniculata_contig75945.15586.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig75945.15586.1 vs. uniprot
Match: A0A6H5KHR7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHR7_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 7.750e-11
Identity = 35/82 (42.68%), Postives = 48/82 (58.54%), Query Frame = 1
Query:    1 VFHKIGDGEVVARIIIYVDDLLIGTKEPKIMDELLADLQSDHKLKDLGDARYYSGCHITRDRKESKVKIDQHLYARSMAERF 246
            VF K+ DGEVV RI+IYVDD+L+   E +  +EL A    +  +KDLG   +Y GC I  D +    K+ Q +Y   M +RF
Sbjct:  295 VFRKVVDGEVVGRIVIYVDDILVAADEGE-REELFASFNKNFPVKDLGKCTWYDGCAIAMDVENGITKLSQTVYIERMLKRF 375          
BLAST of mRNA_H-paniculata_contig75945.15586.1 vs. uniprot
Match: A0A507CUA5_9FUNG (DNA-directed DNA polymerase n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507CUA5_9FUNG)

HSP 1 Score: 62.8 bits (151), Expect = 1.320e-9
Identity = 30/77 (38.96%), Postives = 51/77 (66.23%), Query Frame = 1
Query:   16 GDGEVVARIIIYVDDLLIGTKEPKIMDELLADLQSDHKLKDLGDARYYSGCHITRDRKESKVKIDQHLYARSMAERF 246
            G+GE    I++YVDDLLI +K+ + ++E+   L +++++K+LG+   + G HI RD  + KV + Q  Y +SM E+F
Sbjct:   76 GEGERKCYIVLYVDDLLIASKDIRAIEEIKRILHTEYRMKELGEVGVFIGVHIKRDLNKRKVYLSQSQYIKSMLEKF 152          
BLAST of mRNA_H-paniculata_contig75945.15586.1 vs. uniprot
Match: UPI000DE688C1 (hypothetical protein n=1 Tax=Escherichia sp. R8 TaxID=2161825 RepID=UPI000DE688C1)

HSP 1 Score: 60.5 bits (145), Expect = 8.350e-9
Identity = 31/81 (38.27%), Postives = 52/81 (64.20%), Query Frame = 1
Query:    7 HKIGDGEVVARIIIYVDDLLIGTKEPKIMDELLADLQSDHKLKDLGDARYYSGCHITRDRKESKVKIDQHLYARSMAERFG 249
            HK+ DG  V  +++YVDD+LI +K  + +D+L   L+ + ++KDLG+A+   G  I RDR+  K+ + Q  Y + + +RFG
Sbjct:  295 HKLKDGSFV-YLLLYVDDMLIASKNLEEIDKLKIQLKKEFEMKDLGEAKKILGMEIIRDRRSKKLCLSQKEYLKRVLQRFG 374          
BLAST of mRNA_H-paniculata_contig75945.15586.1 vs. uniprot
Match: UPI001131AAB8 (Ty1/Copia family RNAse HI domain-containing protein n=1 Tax=Escherichia coli TaxID=562 RepID=UPI001131AAB8)

HSP 1 Score: 58.5 bits (140), Expect = 3.690e-8
Identity = 30/80 (37.50%), Postives = 51/80 (63.75%), Query Frame = 1
Query:   10 KIGDGEVVARIIIYVDDLLIGTKEPKIMDELLADLQSDHKLKDLGDARYYSGCHITRDRKESKVKIDQHLYARSMAERFG 249
            K+ DG  V  +++YVDD+LI +K  + +D+L   L+ + ++KDLG+A+   G  I RDR+  K+ + Q  Y + + +RFG
Sbjct:   16 KLNDGSFV-YLLLYVDDMLIASKNSEEIDKLKIQLKKEFEMKDLGEAKKILGMEIIRDRRSKKLCLSQKEYLKRVLQRFG 94          
BLAST of mRNA_H-paniculata_contig75945.15586.1 vs. uniprot
Match: A0A401GDC8_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GDC8_9APHY)

HSP 1 Score: 57.0 bits (136), Expect = 7.970e-8
Identity = 29/69 (42.03%), Postives = 45/69 (65.22%), Query Frame = 1
Query:   40 IIIYVDDLLIGTKEPKIMDELLADLQSDHKLKDLGDARYYSGCHITRDRKESKVKIDQHLYARSMAERF 246
            I ++VDDLL+ T  PK+M+EL  DLQ   ++ DLG+ +   G  I RDR+  K++I Q  Y +S+ +R+
Sbjct:   93 ITVWVDDLLLFTNSPKLMEELKHDLQDLFEVMDLGEPQKIIGIEIERDREVGKIQISQQHYIKSILKRY 161          
BLAST of mRNA_H-paniculata_contig75945.15586.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY)

HSP 1 Score: 57.4 bits (137), Expect = 1.070e-7
Identity = 32/76 (42.11%), Postives = 48/76 (63.16%), Query Frame = 1
Query:   19 DGEVVARIIIYVDDLLIGTKEPKIMDELLADLQSDHKLKDLGDARYYSGCHITRDRKESKVKIDQHLYARSMAERF 246
            +GEV   I ++VDDLL+ T  PK+M+EL  DLQ   ++ DLG+ +   G  I RDR+  K++I Q  Y  S+ +R+
Sbjct: 1093 EGEV-QIITVWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLGEPQKIVGIEIERDREAGKIQISQQHYIESILKRY 1167          
BLAST of mRNA_H-paniculata_contig75945.15586.1 vs. uniprot
Match: A0A401G7F6_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401G7F6_9APHY)

HSP 1 Score: 56.6 bits (135), Expect = 1.930e-7
Identity = 29/69 (42.03%), Postives = 44/69 (63.77%), Query Frame = 1
Query:   40 IIIYVDDLLIGTKEPKIMDELLADLQSDHKLKDLGDARYYSGCHITRDRKESKVKIDQHLYARSMAERF 246
            I ++VDDLL+ T  PK+M+EL  DL+   ++ DLG+ +   G  I RDRK  K++I Q  Y  S+ +R+
Sbjct:  431 ITVWVDDLLLFTNSPKLMEELKHDLRDLFEVTDLGEPQKIVGIEIERDRKAGKIQISQQHYIESILKRY 499          
BLAST of mRNA_H-paniculata_contig75945.15586.1 vs. uniprot
Match: A0A401GI64_9APHY (CCHC-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GI64_9APHY)

HSP 1 Score: 56.6 bits (135), Expect = 1.970e-7
Identity = 31/76 (40.79%), Postives = 49/76 (64.47%), Query Frame = 1
Query:   19 DGEVVARIIIYVDDLLIGTKEPKIMDELLADLQSDHKLKDLGDARYYSGCHITRDRKESKVKIDQHLYARSMAERF 246
            +GEV   I ++VDDLL+ T  PK+M+EL  DLQ   ++ DLG+ + + G  I RDR+   ++I Q  Y +S+ +R+
Sbjct:  802 EGEV-QIITVWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLGEPQKFVGIEIERDREAGTLQISQQHYIKSILKRY 876          
BLAST of mRNA_H-paniculata_contig75945.15586.1 vs. uniprot
Match: UPI001B3B7964 (leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 n=1 Tax=Gossypium hirsutum TaxID=3635 RepID=UPI001B3B7964)

HSP 1 Score: 56.6 bits (135), Expect = 1.980e-7
Identity = 31/84 (36.90%), Postives = 52/84 (61.90%), Query Frame = 1
Query:    1 VFH-KIGDGEVVARIIIYVDDLLIGTKEPKIMDELLADLQSDHKLKDLGDARYYSGCHITRDRKESKVKIDQHLYARSMAERFG 249
            V+H K+ DG  +  +++YVDD+LI +K    +++L + L  + ++KDLG A+   G  I RDRK  K+++ Q  Y   + +RFG
Sbjct:  701 VYHRKLSDGSHI-YLLLYVDDMLIASKNMSEINKLKSQLSGEFEMKDLGAAKKILGMDIHRDRKAGKLRVSQKNYIEKVLQRFG 783          
BLAST of mRNA_H-paniculata_contig75945.15586.1 vs. uniprot
Match: A0A2P5W031_GOSBA (Uncharacterized protein n=1 Tax=Gossypium barbadense TaxID=3634 RepID=A0A2P5W031_GOSBA)

HSP 1 Score: 56.6 bits (135), Expect = 2.010e-7
Identity = 31/84 (36.90%), Postives = 52/84 (61.90%), Query Frame = 1
Query:    1 VFH-KIGDGEVVARIIIYVDDLLIGTKEPKIMDELLADLQSDHKLKDLGDARYYSGCHITRDRKESKVKIDQHLYARSMAERFG 249
            V+H K+ DG  +  +++YVDD+LI +K    +++L + L  + ++KDLG A+   G  I RDRK  K+++ Q  Y   + +RFG
Sbjct: 1504 VYHRKLSDGSHI-YLLLYVDDMLIASKNMSEINKLKSQLSGEFEMKDLGAAKKILGMDIHRDRKAGKLRVSQKNYIEKVLQRFG 1586          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig75945.15586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHR7_9PHAE7.750e-1142.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A507CUA5_9FUNG1.320e-938.96DNA-directed DNA polymerase n=1 Tax=Synchytrium en... [more]
UPI000DE688C18.350e-938.27hypothetical protein n=1 Tax=Escherichia sp. R8 Ta... [more]
UPI001131AAB83.690e-837.50Ty1/Copia family RNAse HI domain-containing protei... [more]
A0A401GDC8_9APHY7.970e-842.03Uncharacterized protein n=1 Tax=Sparassis crispa T... [more]
A0A401GYH9_9APHY1.070e-742.11Uncharacterized protein n=6 Tax=Sparassis crispa T... [more]
A0A401G7F6_9APHY1.930e-742.03Uncharacterized protein n=1 Tax=Sparassis crispa T... [more]
A0A401GI64_9APHY1.970e-740.79CCHC-type domain-containing protein n=1 Tax=Sparas... [more]
UPI001B3B79641.980e-736.90leucine-rich repeat receptor-like serine/threonine... [more]
A0A2P5W031_GOSBA2.010e-736.90Uncharacterized protein n=1 Tax=Gossypium barbaden... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig75945contigH-paniculata_contig75945:351..599 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930935.5370286-CDS-H-paniculata_contig75945:350..5991622930935.5370286-CDS-H-paniculata_contig75945:350..599Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig75945 351..599 -
1691481517.8242753-CDS-H-paniculata_contig75945:350..5991691481517.8242753-CDS-H-paniculata_contig75945:350..599Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig75945 351..599 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig75945.15586.1prot_H-paniculata_contig75945.15586.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig75945 351..599 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig75945.15586.1

>prot_H-paniculata_contig75945.15586.1 ID=prot_H-paniculata_contig75945.15586.1|Name=mRNA_H-paniculata_contig75945.15586.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
VFHKIGDGEVVARIIIYVDDLLIGTKEPKIMDELLADLQSDHKLKDLGDA
RYYSGCHITRDRKESKVKIDQHLYARSMAERFG
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mRNA from alignment at H-paniculata_contig75945:351..599-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig75945.15586.1 ID=mRNA_H-paniculata_contig75945.15586.1|Name=mRNA_H-paniculata_contig75945.15586.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=249bp|location=Sequence derived from alignment at H-paniculata_contig75945:351..599- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTTCCACAAGATCGGGGACGGGGAGGTGGTCGCACGGATCATCATATA TGTAGATGACCTGTTGATCGGCACAAAGGAACCCAAAATCATGGACGAGT TGCTGGCAGACCTGCAATCGGATCATAAGCTCAAAGACCTGGGAGATGCA AGGTACTATTCAGGATGTCACATCACCCGCGATAGGAAAGAGAGCAAGGT CAAGATTGACCAGCACCTCTATGCGAGGTCCATGGCCGAGCGTTTCGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig75945:351..599-

>mRNA_H-paniculata_contig75945.15586.1 ID=mRNA_H-paniculata_contig75945.15586.1|Name=mRNA_H-paniculata_contig75945.15586.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig75945:351..599- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTTCCACAAGATCGGGGACGGGGAGGTGGTCGCACGGATCATCATATA
TGTAGATGACCTGTTGATCGGCACAAAGGAACCCAAAATCATGGACGAGT
TGCTGGCAGACCTGCAATCGGATCATAAGCTCAAAGACCTGGGAGATGCA
AGGTACTATTCAGGATGTCACATCACCCGCGATAGGAAAGAGAGCAAGGT
CAAGATTGACCAGCACCTCTATGCGAGGTCCATGGCCGAGCGTTTCGGAG
TGTTCCACAAGATCGGGGACGGGGAGGTGGTCGCACGGATCATCATATAT
GTAGATGACCTGTTGATCGGCACAAAGGAACCCAAAATCATGGACGAGTT
GCTGGCAGACCTGCAATCGGATCATAAGCTCAAAGACCTGGGAGATGCAA
GGTACTATTCAGGATGTCACATCACCCGCGATAGGAAAGAGAGCAAGGTC
AAGATTGACCAGCACCTCTATGCGAGGTCCATGGCCGAGCGTTTCGGA
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