mRNA_H-paniculata_contig7594.15585.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7594.15585.1
Unique NamemRNA_H-paniculata_contig7594.15585.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7594.15585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7594contigH-paniculata_contig7594:8886..9556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size671
Cds size192
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7594.15585.1prot_H-paniculata_contig7594.15585.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7594 9047..9238 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930935.4495852-UTR-H-paniculata_contig7594:8885..90461622930935.4495852-UTR-H-paniculata_contig7594:8885..9046Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7594 8886..9046 +
1691481517.7899988-UTR-H-paniculata_contig7594:8885..90461691481517.7899988-UTR-H-paniculata_contig7594:8885..9046Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7594 8886..9046 +
1622930935.4847028-UTR-H-paniculata_contig7594:9238..95561622930935.4847028-UTR-H-paniculata_contig7594:9238..9556Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7594 9239..9556 +
1691481517.8158069-UTR-H-paniculata_contig7594:9238..95561691481517.8158069-UTR-H-paniculata_contig7594:9238..9556Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7594 9239..9556 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930935.4673104-CDS-H-paniculata_contig7594:9046..92381622930935.4673104-CDS-H-paniculata_contig7594:9046..9238Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7594 9047..9238 +
1691481517.807537-CDS-H-paniculata_contig7594:9046..92381691481517.807537-CDS-H-paniculata_contig7594:9046..9238Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7594 9047..9238 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7594.15585.1

>prot_H-paniculata_contig7594.15585.1 ID=prot_H-paniculata_contig7594.15585.1|Name=mRNA_H-paniculata_contig7594.15585.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
MVSLASLHLCLVLVLALVATVRGKVWKGNARLSSKKSWMPLTNFAFDIGL
GEVSDSTYRVSCS*
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mRNA from alignment at H-paniculata_contig7594:8886..9556+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7594.15585.1 ID=mRNA_H-paniculata_contig7594.15585.1|Name=mRNA_H-paniculata_contig7594.15585.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=671bp|location=Sequence derived from alignment at H-paniculata_contig7594:8886..9556+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGCCAAATTCGCAATTTTAGATAATATACTGGGCTAGTGGGCCTACCGT
CACTCACCTCTGCGGTGTCTGTTTGTGCGAAGCGGCACAGGACACAGGGA
GGGCGTATCAGTTTTGTACGGTACAGGATAGAATTAGTCGACCTCTTGGC
GGGAAGGGAATATGGTGTCTTTAGCTAGCCTGCACTTATGCTTGGTGCTG
GTGCTGGCACTTGTTGCGACAGTCCGAGGCAAGGTGTGGAAAGGCAATGC
CAGGCTATCGTCCAAGAAGTCATGGATGCCTTTGACAAACTTCGCATTTG
ATATTGGCCTTGGAGAGGTGAGCGACTCTACTTACCGTGTGTCTTGCAGC
TAGGTGTTTTGAATTATGTAGTACAGATGACACGATTGTACAGCATTGCG
TTTGTGGTCGACCCGACTTGTGCTATACGACATGTGAGCAGTTATGGTTA
TGCCCTTTTTTCTTTCGTTCCCAAGCTTCATTTAGGGTTGGAGTCAAGTC
CCTGTGCATAGCCAGCCCTGTTCTCCTTCTCCGCCAACCTTCATTTGGGC
GTAGAGTCAAGTGCCTGTGCAGAGCTAAGTTATGGTTTCGGCTCGGTCAC
ATATGAACTAGATATTATGTGTCCGGGTACCGAAGAATTCTCCTTTCCGC
CTGGAGATGTAGTGTGGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig7594:8886..9556+

>mRNA_H-paniculata_contig7594.15585.1 ID=mRNA_H-paniculata_contig7594.15585.1|Name=mRNA_H-paniculata_contig7594.15585.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig7594:8886..9556+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGTCTTTAGCTAGCCTGCACTTATGCTTGGTGCTGGTGCTGGCACT
TGTTGCGACAGTCCGAGGCAAGGTGTGGAAAGGCAATGCCAGGCTATCGT
CCAAGAAGTCATGGATGCCTTTGACAAACTTCGCATTTGATATTGGCCTT
GGAGAGGTGAGCGACTCTACTTACCGTGTGTCTTGCAGCTAGATGGTGTC
TTTAGCTAGCCTGCACTTATGCTTGGTGCTGGTGCTGGCACTTGTTGCGA
CAGTCCGAGGCAAGGTGTGGAAAGGCAATGCCAGGCTATCGTCCAAGAAG
TCATGGATGCCTTTGACAAACTTCGCATTTGATATTGGCCTTGGAGAGGT
GAGCGACTCTACTTACCGTGTGTCTTGCAGCTAG
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