mRNA_H-paniculata_contig75873.15575.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig75873.15575.1
Unique NamemRNA_H-paniculata_contig75873.15575.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig75873.15575.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.110e-35
Identity = 75/139 (53.96%), Postives = 96/139 (69.06%), Query Frame = 1 
Query:    1 MVMRLLKSLYDLRQSLLDWWWTIGKHLAESGFKSLKSNPYVYVYSERNTIVDLTLYVDDVLLLGKVLKVLGRIKQKLTSRFSMTDMGDVSLVLRMGVTKDRTKGTVTISQDNYTKSLLERYRMASCNPAYTPGMGEELS 417
            +VM+L KSLY L QS  +W+ TI   L E GF  LKS+  VY+Y   +  V LTLYVDD+LL G   + +  IK+KLT RF MTDMG+V LVL M + +DR +GT+TISQ+ Y+KS+LER+ M+ C P  TPG G ELS
Sbjct:  600 LVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLYDHDDVQVYLTLYVDDLLLAGNNSRAISMIKKKLTQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYSKSILERFGMSECKPTSTPGYGSELS 738
[Close]
BLAST of mRNA_H-paniculata_contig75873.15575.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 1.420e-32
Identity = 71/135 (52.59%), Postives = 90/135 (66.67%), Query Frame = 1 
Query:    1 MVMRLLKSLYDLRQSLLDWWWTIGKHLAESGFKSLKSNPYVYVYSERNTIVDLTLYVDDVLLLGKVLKVLGRIKQKLTSRFSMTDMGDVSLVLRMGVTKDRTKGTVTISQDNYTKSLLERYRMASCNPAYTPGMG 405
            +VM+L KSLY L QS  +W+ TI   L E GF  LKS+  VY+Y   +  V LTLYVDD+LL G     +  IK+KL  RF MTDMG+V LVL M + +DR +G +TISQ+ YTKS+LER+ M+ C P  TPG G
Sbjct:  711 LVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLYDHDDVQVYLTLYVDDLLLAGNNSNAISMIKKKLKQRFKMTDMGEVKLVLGMEIKRDRNQGALTISQEAYTKSILERFGMSECKPTSTPGYG 845
[Close]
BLAST of mRNA_H-paniculata_contig75873.15575.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 2.700e-32
Identity = 71/139 (51.08%), Postives = 91/139 (65.47%), Query Frame = 1 
Query:    1 MVMRLLKSLYDLRQSLLDWWWTIGKHLAESGFKSLKSNPYVYVYSERNTIVDLTLYVDDVLLLGKVLKVLGRIKQKLTSRFSMTDMGDVSLVLRMGVTKDRTKGTVTISQDNYTKSLLERYRMASCNPAYTPGMGEELS 417
            MVM+L KSLY L QS  +W+ TI   L E GF +LKS+P VY+Y      + LTLYVDD+LL G     +  +K KL  RF MTD+G+ SLVLRM + +DR   T+TISQ+ Y KS+LER+ M+   P  TPG G E+S
Sbjct:  623 MVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEIS 761
[Close]
BLAST of mRNA_H-paniculata_contig75873.15575.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 7.520e-32
Identity = 69/139 (49.64%), Postives = 90/139 (64.75%), Query Frame = 1 
Query:    1 MVMRLLKSLYDLRQSLLDWWWTIGKHLAESGFKSLKSNPYVYVYSERNTIVDLTLYVDDVLLLGKVLKVLGRIKQKLTSRFSMTDMGDVSLVLRMGVTKDRTKGTVTISQDNYTKSLLERYRMASCNPAYTPGMGEELS 417
            MVM+L KSLY L QS  +W+ TI   + E GF +LKS+P VY+Y      + LTLYVDD+LL G     +  +K KL  RF MTD+G+ SLVL M + +DR   T+TISQ+ Y KS+LER+ M+   P  TPG G E+S
Sbjct:   63 MVMKLNKSLYGLAQSPGNWFNTIDPVIVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEIS 201
[Close]
BLAST of mRNA_H-paniculata_contig75873.15575.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 2.450e-31
Identity = 70/139 (50.36%), Postives = 90/139 (64.75%), Query Frame = 1 
Query:    1 MVMRLLKSLYDLRQSLLDWWWTIGKHLAESGFKSLKSNPYVYVYSERNTIVDLTLYVDDVLLLGKVLKVLGRIKQKLTSRFSMTDMGDVSLVLRMGVTKDRTKGTVTISQDNYTKSLLERYRMASCNPAYTPGMGEELS 417
            MVM+L KSLY L QS  +W+ TI   L E GF +LKS+P VY+Y      + LTLYVDD+LL G     +  +K KL  RF MTD+G+ SLVL M + +DR   T+TISQ+ Y KS+LER+ M+   P  TPG G E+S
Sbjct: 1457 MVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEIS 1595
[Close]
BLAST of mRNA_H-paniculata_contig75873.15575.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 8.450e-31
Identity = 69/139 (49.64%), Postives = 90/139 (64.75%), Query Frame = 1 
Query:    1 MVMRLLKSLYDLRQSLLDWWWTIGKHLAESGFKSLKSNPYVYVYSERNTIVDLTLYVDDVLLLGKVLKVLGRIKQKLTSRFSMTDMGDVSLVLRMGVTKDRTKGTVTISQDNYTKSLLERYRMASCNPAYTPGMGEELS 417
            MVM+L KSLY L QS  +W+ TI   L E GF +LKS+P VY+Y      + LTLYVDD+LL G     +  +K KL  RF MTD+G+ SLVL M + +DR   T+TISQ+ Y KS+LER+ ++   P  TPG G E+S
Sbjct: 1292 MVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEIS 1430
[Close]
BLAST of mRNA_H-paniculata_contig75873.15575.1 vs. uniprot
Match: A0A6H5KL30_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL30_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 1.130e-30
Identity = 71/139 (51.08%), Postives = 91/139 (65.47%), Query Frame = 1 
Query:    1 MVMRLLKSLYDLRQSLLDWWWTIGKHLAESGFKSLKSNPYVYVYSERNTIVDLTLYVDDVLLLGKVLKVLGRIKQKLTSRFSMTDMGDVSLVLRMGVTKDRTKGTVTISQDNYTKSLLERYRMASCNPAYTPGMGEELS 417
            +VM+L KSLY L QS  +W+ TI   L E GF  L+S+  VY+Y   +  V LTLYVDD+LL G    V+  IK KL  R  MTDMG+V LVL M + +DR +GT+T SQ+ Y+KS+LER+ M+   P  TPG G ELS
Sbjct:  899 LVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLQSDTCVYLYDHDDVQVFLTLYVDDLLLAGNNANVMLMIKNKLKQRSKMTDMGEVKLVLGMEIKRDRNQGTLTTSQEAYSKSILERFGMSERKPTSTPGYGSELS 1037
[Close]
BLAST of mRNA_H-paniculata_contig75873.15575.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 1.110e-26
Identity = 69/152 (45.39%), Postives = 88/152 (57.89%), Query Frame = 1 
Query:    1 MVMRLLKSLYDLRQSLLDWWWTIGKHLAESGFKSLKSNPYVYVYSERNTIVDLTLYVDDVLLLGK-------------VLKVLGRIKQKLTSRFSMTDMGDVSLVLRMGVTKDRTKGTVTISQDNYTKSLLERYRMASCNPAYTPGMGEELS 417
            MVM+L KSLY L QS  +W+ TI   L E GF +LKS+P VY+Y      + LTLYVDD+LL G               L  + R   KL  RF MTD+G+ S  L M + +DR   T+TISQ+ Y KS+LER+ M+   P  TPG G E+S
Sbjct:  271 MVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAIKHLLSSGWKLGGIARQXGKLQKRFKMTDLGEASFALGMKIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEIS 422
[Close]
BLAST of mRNA_H-paniculata_contig75873.15575.1 vs. uniprot
Match: A0A6H5KMG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG0_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 2.930e-26
Identity = 59/122 (48.36%), Postives = 78/122 (63.93%), Query Frame = 1 
Query:   52 DWWWTIGKHLAESGFKSLKSNPYVYVYSERNTIVDLTLYVDDVLLLGKVLKVLGRIKQKLTSRFSMTDMGDVSLVLRMGVTKDRTKGTVTISQDNYTKSLLERYRMASCNPAYTPGMGEELS 417
            +W+ TI   L E GF +LKS+P VY+Y      + LTLYVDD+LL G     +  +K KL  RF MTD+G+ SLVL M + +DR   T+TISQ+ Y KS+LER+ M+   P  TPG G E+S
Sbjct:  466 NWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEIS 587
[Close]
BLAST of mRNA_H-paniculata_contig75873.15575.1 vs. uniprot
Match: A0A6H5KTY2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY2_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 3.960e-26
Identity = 62/139 (44.60%), Postives = 91/139 (65.47%), Query Frame = 1 
Query:    1 MVMRLLKSLYDLRQSLLDWWWTIGKHLAESGFKSLKSNPYVYVYSERNTIVDLTLYVDDVLLLGKVLKVLGRIKQKLTSRFSMTDMGDVSLVLRMGVTKDRTKGTVTISQDNYTKSLLERYRMASCNPAYTPGMGEELS 417
            MV +L +SLY L QS   W  T+ + L   G+K  +S+P VYVY+  N+IV LT+YVDD+L+ G   +++ + K++LT RF MTDMG+V  +L + V +D  + T+ ISQ++Y  +LLER+ M   NP  T G G E+S
Sbjct:  328 MVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNSIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVPRDYEQRTLAISQEHYVNALLERFGMQEANPVSTSGYGAEIS 466
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig75873.15575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KL37_9PHAE1.110e-3553.96Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KXM1_9PHAE1.420e-3252.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNH5_9PHAE2.700e-3251.08Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L5U2_9PHAE7.520e-3249.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J842_9PHAE2.450e-3150.36Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KJH6_9PHAE8.450e-3149.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL30_9PHAE1.130e-3051.08Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JME8_9PHAE1.110e-2645.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KMG0_9PHAE2.930e-2648.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KTY2_9PHAE3.960e-2644.60Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig75873contigH-paniculata_contig75873:17..433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score89.4
Seed ortholog evalue1.5e-15
Seed eggNOG ortholog35725.K2R444
Hectar predicted targeting categoryother localisation
EggNOG free text desc.retrotransposon
EggNOG OGs205S4@147541,38DPC@33154,3NUZ7@4751,3QNZW@4890,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelDothideomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size417
Cds size417
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930933.9101503-CDS-H-paniculata_contig75873:16..4331622930933.9101503-CDS-H-paniculata_contig75873:16..433Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig75873 17..433 -
1691481517.0631437-CDS-H-paniculata_contig75873:16..4331691481517.0631437-CDS-H-paniculata_contig75873:16..433Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig75873 17..433 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig75873.15575.1prot_H-paniculata_contig75873.15575.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig75873 17..433 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig75873.15575.1

>prot_H-paniculata_contig75873.15575.1 ID=prot_H-paniculata_contig75873.15575.1|Name=mRNA_H-paniculata_contig75873.15575.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp
MVMRLLKSLYDLRQSLLDWWWTIGKHLAESGFKSLKSNPYVYVYSERNTI
VDLTLYVDDVLLLGKVLKVLGRIKQKLTSRFSMTDMGDVSLVLRMGVTKD
RTKGTVTISQDNYTKSLLERYRMASCNPAYTPGMGEELS
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mRNA from alignment at H-paniculata_contig75873:17..433-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig75873.15575.1 ID=mRNA_H-paniculata_contig75873.15575.1|Name=mRNA_H-paniculata_contig75873.15575.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=417bp|location=Sequence derived from alignment at H-paniculata_contig75873:17..433- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAATGAGGCTTTTGAAGAGCCTTTATGATCTTCGTCAGAGCCTGTT
GGACTGGTGGTGGACTATCGGTAAACATCTGGCGGAGAGTGGTTTCAAAA
GCCTCAAGTCAAACCCGTACGTCTACGTCTACTCAGAAAGAAACACCATC
GTCGATTTGACCCTGTACGTCGACGACGTTCTTCTTCTCGGAAAAGTCCT
CAAGGTGCTCGGGCGGATCAAGCAGAAGCTGACGAGCCGTTTCTCAATGA
CGGACATGGGAGACGTGTCGCTAGTGCTCAGGATGGGTGTTACCAAGGAT
CGCACGAAAGGGACGGTGACCATCAGCCAGGACAACTACACAAAGTCGTT
GTTGGAGCGGTATCGTATGGCAAGCTGCAATCCTGCGTACACGCCTGGTA
TGGGAGAAGAGCTTTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig75873:17..433-

>mRNA_H-paniculata_contig75873.15575.1 ID=mRNA_H-paniculata_contig75873.15575.1|Name=mRNA_H-paniculata_contig75873.15575.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at H-paniculata_contig75873:17..433- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAATGAGGCTTTTGAAGAGCCTTTATGATCTTCGTCAGAGCCTGTT
GGACTGGTGGTGGACTATCGGTAAACATCTGGCGGAGAGTGGTTTCAAAA
GCCTCAAGTCAAACCCGTACGTCTACGTCTACTCAGAAAGAAACACCATC
GTCGATTTGACCCTGTACGTCGACGACGTTCTTCTTCTCGGAAAAGTCCT
CAAGGTGCTCGGGCGGATCAAGCAGAAGCTGACGAGCCGTTTCTCAATGA
CGGACATGGGAGACGTGTCGCTAGTGCTCAGGATGGGTGTTACCAAGGAT
CGCACGAAAGGGACGGTGACCATCAGCCAGGACAACTACACAAAGTCGTT
GTTGGAGCGGTATCGTATGGCAAGCTGCAATCCTGCGTACACGCCTGGTA
TGGGAGAAGAGCTTTCGATGGTAATGAGGCTTTTGAAGAGCCTTTATGAT
CTTCGTCAGAGCCTGTTGGACTGGTGGTGGACTATCGGTAAACATCTGGC
GGAGAGTGGTTTCAAAAGCCTCAAGTCAAACCCGTACGTCTACGTCTACT
CAGAAAGAAACACCATCGTCGATTTGACCCTGTACGTCGACGACGTTCTT
CTTCTCGGAAAAGTCCTCAAGGTGCTCGGGCGGATCAAGCAGAAGCTGAC
GAGCCGTTTCTCAATGACGGACATGGGAGACGTGTCGCTAGTGCTCAGGA
TGGGTGTTACCAAGGATCGCACGAAAGGGACGGTGACCATCAGCCAGGAC
AACTACACAAAGTCGTTGTTGGAGCGGTATCGTATGGCAAGCTGCAATCC
TGCGTACACGCCTGGTATGGGAGAAGAGCTTTCG
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