mRNA_H-paniculata_contig7584.15571.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7584.15571.1
Unique NamemRNA_H-paniculata_contig7584.15571.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7584.15571.1 vs. uniprot
Match: D7G3K8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3K8_ECTSI)

HSP 1 Score: 239 bits (609), Expect = 4.650e-70
Identity = 142/259 (54.83%), Postives = 169/259 (65.25%), Query Frame = 1 
Query:    4 DDDDGGAGAGEMTVVAVRTSLLRNRADE---GPSPDEGEWEARVRNFIRYVEGLPPGPTQEELSLMFAAALDPTLVRMRAANNLLVELAELCALPDPSLGHDEDEDGDDDLGGPGPDRL---VRRQGFKVRLELDAADGDEPPPEGLEYLLKVVGAARGAIEAAARARACVAAAGDTLGGLHELKADYTRSLPFGPRQPIQSIIEEEQARVRGYTTAHEDI---EGQRVHELRLRGRDVGDAYRGVQGEPGWSGVRRQV 753
            D+  G AGAGEMTV AVR SLL N ++E   GPSP E  WE  V+ FI +VE LPPG  QEELSLMFAAALDPTLVR+R AN  LV LAE C LP        D+DG+               ++ GFKVRLEL+A +   PPP+G+  +L+ V  A  A+EAAAR  ACV   GDTLGGL E+K DY R LP GPR+P+Q II EE+ARV+GY  AHE +    G+ VHE+   G +VG AYR V+ E GWSGVR QV
Sbjct:  490 DNAGGPAGAGEMTVAAVRESLLSNPSEERKPGPSPQE--WEVAVKKFISHVESLPPGTEQEELSLMFAAALDPTLVRLRMANTKLVGLAEAC-LPQGEGEAPGDDDGEXXXXXXXXXXXXXGAKKSGFKVRLELEAPEEGAPPPDGIAGVLRAVAGAAAAVEAAARVEACVICGGDTLGGLGEIKRDYKRCLPPGPREPLQFIIAEEEARVQGYVGAHEQVLREAGETVHEV---GPEVGRAYRAVEREAGWSGVRDQV 742
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7584.15571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3K8_ECTSI4.650e-7054.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7584contigH-paniculata_contig7584:507..1259 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_005040.1
Exons1
Model size753
Cds size753
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930933.679743-CDS-H-paniculata_contig7584:506..12591622930933.679743-CDS-H-paniculata_contig7584:506..1259Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7584 507..1259 -
1691481516.9581556-CDS-H-paniculata_contig7584:506..12591691481516.9581556-CDS-H-paniculata_contig7584:506..1259Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7584 507..1259 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7584.15571.1prot_H-paniculata_contig7584.15571.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7584 507..1259 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7584.15571.1

>prot_H-paniculata_contig7584.15571.1 ID=prot_H-paniculata_contig7584.15571.1|Name=mRNA_H-paniculata_contig7584.15571.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=251bp
MDDDDGGAGAGEMTVVAVRTSLLRNRADEGPSPDEGEWEARVRNFIRYVE
GLPPGPTQEELSLMFAAALDPTLVRMRAANNLLVELAELCALPDPSLGHD
EDEDGDDDLGGPGPDRLVRRQGFKVRLELDAADGDEPPPEGLEYLLKVVG
AARGAIEAAARARACVAAAGDTLGGLHELKADYTRSLPFGPRQPIQSIIE
EEQARVRGYTTAHEDIEGQRVHELRLRGRDVGDAYRGVQGEPGWSGVRRQ
V
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mRNA from alignment at H-paniculata_contig7584:507..1259-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7584.15571.1 ID=mRNA_H-paniculata_contig7584.15571.1|Name=mRNA_H-paniculata_contig7584.15571.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=753bp|location=Sequence derived from alignment at H-paniculata_contig7584:507..1259- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGATGACGATGGCGGCGCGGGAGCGGGAGAAATGACGGTCGTGGC
GGTCCGTACGTCTCTGTTACGGAACCGGGCCGACGAGGGACCCAGCCCGG
ACGAAGGAGAGTGGGAGGCCCGGGTCCGGAACTTCATAAGGTATGTGGAA
GGGCTGCCCCCGGGTCCTACCCAAGAAGAGCTGTCGCTCATGTTCGCCGC
CGCGTTGGACCCTACGCTGGTGCGCATGCGCGCGGCGAACAATCTGCTTG
TCGAGCTCGCGGAGCTCTGCGCGCTTCCGGACCCGAGCCTCGGACACGAT
GAGGACGAGGACGGAGACGACGATCTCGGCGGACCGGGTCCGGACCGCCT
GGTCCGCCGACAGGGATTCAAGGTTCGTCTCGAGCTCGATGCCGCGGACG
GAGACGAACCGCCCCCCGAAGGCCTGGAGTACTTGCTGAAGGTGGTTGGA
GCGGCGAGGGGCGCGATAGAAGCGGCAGCGCGCGCGCGGGCGTGTGTGGC
GGCCGCAGGGGACACGCTCGGCGGGTTGCACGAGCTCAAGGCGGACTACA
CGAGGTCGCTGCCCTTCGGACCCCGGCAGCCTATACAGTCCATCATAGAG
GAGGAGCAGGCGAGGGTAAGGGGGTATACCACGGCGCACGAGGATATCGA
GGGGCAGCGCGTGCACGAGCTGCGCCTGCGAGGTCGTGATGTTGGCGACG
CCTATCGGGGGGTGCAGGGAGAGCCCGGGTGGAGCGGAGTGAGGCGGCAG
GTG
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Coding sequence (CDS) from alignment at H-paniculata_contig7584:507..1259-

>mRNA_H-paniculata_contig7584.15571.1 ID=mRNA_H-paniculata_contig7584.15571.1|Name=mRNA_H-paniculata_contig7584.15571.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1506bp|location=Sequence derived from alignment at H-paniculata_contig7584:507..1259- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGATGACGATGGCGGCGCGGGAGCGGGAGAAATGACGGTCGTGGC
GGTCCGTACGTCTCTGTTACGGAACCGGGCCGACGAGGGACCCAGCCCGG
ACGAAGGAGAGTGGGAGGCCCGGGTCCGGAACTTCATAAGGTATGTGGAA
GGGCTGCCCCCGGGTCCTACCCAAGAAGAGCTGTCGCTCATGTTCGCCGC
CGCGTTGGACCCTACGCTGGTGCGCATGCGCGCGGCGAACAATCTGCTTG
TCGAGCTCGCGGAGCTCTGCGCGCTTCCGGACCCGAGCCTCGGACACGAT
GAGGACGAGGACGGAGACGACGATCTCGGCGGACCGGGTCCGGACCGCCT
GGTCCGCCGACAGGGATTCAAGGTTCGTCTCGAGCTCGATGCCGCGGACG
GAGACGAACCGCCCCCCGAAGGCCTGGAGTACTTGCTGAAGGTGGTTGGA
GCGGCGAGGGGCGCGATAGAAGCGGCAGCGCGCGCGCGGGCGTGTGTGGC
GGCCGCAGGGGACACGCTCGGCGGGTTGCACGAGCTCAAGGCGGACTACA
CGAGGTCGCTGCCCTTCGGACCCCGGCAGCCTATACAGTCCATCATAGAG
GAGGAGCAGGCGAGGGTAAGGGGGTATACCACGGCGCACGAGGATATCGA
GGGGCAGCGCGTGCACGAGCTGCGCCTGCGAGGTCGTGATGTTGGCGACG
CCTATCGGGGGGTGCAGGGAGAGCCCGGGTGGAGCGGAGTGAGGCGGCAG
GTGATGGATGATGACGATGGCGGCGCGGGAGCGGGAGAAATGACGGTCGT
GGCGGTCCGTACGTCTCTGTTACGGAACCGGGCCGACGAGGGACCCAGCC
CGGACGAAGGAGAGTGGGAGGCCCGGGTCCGGAACTTCATAAGGTATGTG
GAAGGGCTGCCCCCGGGTCCTACCCAAGAAGAGCTGTCGCTCATGTTCGC
CGCCGCGTTGGACCCTACGCTGGTGCGCATGCGCGCGGCGAACAATCTGC
TTGTCGAGCTCGCGGAGCTCTGCGCGCTTCCGGACCCGAGCCTCGGACAC
GATGAGGACGAGGACGGAGACGACGATCTCGGCGGACCGGGTCCGGACCG
CCTGGTCCGCCGACAGGGATTCAAGGTTCGTCTCGAGCTCGATGCCGCGG
ACGGAGACGAACCGCCCCCCGAAGGCCTGGAGTACTTGCTGAAGGTGGTT
GGAGCGGCGAGGGGCGCGATAGAAGCGGCAGCGCGCGCGCGGGCGTGTGT
GGCGGCCGCAGGGGACACGCTCGGCGGGTTGCACGAGCTCAAGGCGGACT
ACACGAGGTCGCTGCCCTTCGGACCCCGGCAGCCTATACAGTCCATCATA
GAGGAGGAGCAGGCGAGGGTAAGGGGGTATACCACGGCGCACGAGGATAT
CGAGGGGCAGCGCGTGCACGAGCTGCGCCTGCGAGGTCGTGATGTTGGCG
ACGCCTATCGGGGGGTGCAGGGAGAGCCCGGGTGGAGCGGAGTGAGGCGG
CAGGTG
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