mRNA_H-paniculata_contig75811.15569.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig75811.15569.1
Unique NamemRNA_H-paniculata_contig75811.15569.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig75811.15569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig75811contigH-paniculata_contig75811:6..566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue2.6e-07
Seed eggNOG ortholog164328.Phyra87183
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHJF@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size561
Cds size555
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930933.5529826-UTR-H-paniculata_contig75811:5..111622930933.5529826-UTR-H-paniculata_contig75811:5..11Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig75811 6..11 +
1691481516.9297454-UTR-H-paniculata_contig75811:5..111691481516.9297454-UTR-H-paniculata_contig75811:5..11Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig75811 6..11 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930933.570283-CDS-H-paniculata_contig75811:11..5661622930933.570283-CDS-H-paniculata_contig75811:11..566Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig75811 12..566 +
1691481516.9392514-CDS-H-paniculata_contig75811:11..5661691481516.9392514-CDS-H-paniculata_contig75811:11..566Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig75811 12..566 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig75811.15569.1prot_H-paniculata_contig75811.15569.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig75811 12..566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig75811.15569.1

>prot_H-paniculata_contig75811.15569.1 ID=prot_H-paniculata_contig75811.15569.1|Name=mRNA_H-paniculata_contig75811.15569.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=185bp
MALKIVQSTESPSEAWRKLQKHYRATGLKEKSRLLREFNSLRMERGEEPT
KFLLRVDRVANDVERLGKTVDEDDRNLAIVNGLSPEYDIERRMIESSDDT
SNRARIEMIIANQYNRFQKQKAETGAKALAITMKGKAEICQLCHKLGHAA
PQCREDRRASSNIKKRFDGNCSHCGKHGHRSEDCW
back to top

mRNA from alignment at H-paniculata_contig75811:6..566+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig75811.15569.1 ID=mRNA_H-paniculata_contig75811.15569.1|Name=mRNA_H-paniculata_contig75811.15569.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=561bp|location=Sequence derived from alignment at H-paniculata_contig75811:6..566+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGGCATGGCGCTGAAGATCGTCCAGAGCACCGAGTCGCCGAGTGAGGC
GTGGAGGAAGCTCCAAAAGCACTACCGCGCTACCGGCCTCAAAGAGAAGT
CCCGTCTGCTGCGCGAATTTAACTCCCTGAGGATGGAACGCGGGGAAGAA
CCCACAAAATTCCTTTTGCGGGTGGACCGGGTCGCCAATGACGTAGAGCG
GCTTGGGAAGACCGTCGACGAAGATGATAGGAATCTGGCGATAGTGAATG
GGCTGTCACCAGAGTATGACATTGAGAGGAGAATGATCGAGAGCAGCGAT
GACACGTCAAATAGAGCGCGCATCGAAATGATCATCGCAAACCAGTATAA
CAGGTTTCAGAAGCAGAAAGCAGAGACCGGAGCAAAGGCACTGGCGATCA
CGATGAAAGGTAAAGCGGAAATTTGCCAGTTATGCCACAAGCTTGGGCAC
GCAGCTCCTCAATGCAGGGAGGATCGAAGGGCATCCTCGAACATCAAGAA
AAGGTTCGACGGCAATTGCAGCCACTGCGGGAAACATGGACATCGAAGTG
AGGACTGCTGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig75811:6..566+

>mRNA_H-paniculata_contig75811.15569.1 ID=mRNA_H-paniculata_contig75811.15569.1|Name=mRNA_H-paniculata_contig75811.15569.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1110bp|location=Sequence derived from alignment at H-paniculata_contig75811:6..566+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCTGAAGATCGTCCAGAGCACCGAGTCGCCGAGTGAGGCGTGGAG
GAAGCTCCAAAAGCACTACCGCGCTACCGGCCTCAAAGAGAAGTCCCGTC
TGCTGCGCGAATTTAACTCCCTGAGGATGGAACGCGGGGAAGAACCCACA
AAATTCCTTTTGCGGGTGGACCGGGTCGCCAATGACGTAGAGCGGCTTGG
GAAGACCGTCGACGAAGATGATAGGAATCTGGCGATAGTGAATGGGCTGT
CACCAGAGTATGACATTGAGAGGAGAATGATCGAGAGCAGCGATGACACG
TCAAATAGAGCGCGCATCGAAATGATCATCGCAAACCAGTATAACAGGTT
TCAGAAGCAGAAAGCAGAGACCGGAGCAAAGGCACTGGCGATCACGATGA
AAGGTAAAGCGGAAATTTGCCAGTTATGCCACAAGCTTGGGCACGCAGCT
CCTCAATGCAGGGAGGATCGAAGGGCATCCTCGAACATCAAGAAAAGGTT
CGACGGCAATTGCAGCCACTGCGGGAAACATGGACATCGAAGTGAGGACT
GCTGGATGGCGCTGAAGATCGTCCAGAGCACCGAGTCGCCGAGTGAGGCG
TGGAGGAAGCTCCAAAAGCACTACCGCGCTACCGGCCTCAAAGAGAAGTC
CCGTCTGCTGCGCGAATTTAACTCCCTGAGGATGGAACGCGGGGAAGAAC
CCACAAAATTCCTTTTGCGGGTGGACCGGGTCGCCAATGACGTAGAGCGG
CTTGGGAAGACCGTCGACGAAGATGATAGGAATCTGGCGATAGTGAATGG
GCTGTCACCAGAGTATGACATTGAGAGGAGAATGATCGAGAGCAGCGATG
ACACGTCAAATAGAGCGCGCATCGAAATGATCATCGCAAACCAGTATAAC
AGGTTTCAGAAGCAGAAAGCAGAGACCGGAGCAAAGGCACTGGCGATCAC
GATGAAAGGTAAAGCGGAAATTTGCCAGTTATGCCACAAGCTTGGGCACG
CAGCTCCTCAATGCAGGGAGGATCGAAGGGCATCCTCGAACATCAAGAAA
AGGTTCGACGGCAATTGCAGCCACTGCGGGAAACATGGACATCGAAGTGA
GGACTGCTGG
back to top