mRNA_H-paniculata_contig7574.15560.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7574.15560.1
Unique NamemRNA_H-paniculata_contig7574.15560.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7574.15560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7574contigH-paniculata_contig7574:1922..2437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size516
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7574.15560.1prot_H-paniculata_contig7574.15560.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7574 1935..2306 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930931.8811831-UTR-H-paniculata_contig7574:1921..19341622930931.8811831-UTR-H-paniculata_contig7574:1921..1934Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7574 1922..1934 +
1691481515.9781213-UTR-H-paniculata_contig7574:1921..19341691481515.9781213-UTR-H-paniculata_contig7574:1921..1934Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7574 1922..1934 +
1622930931.9242911-UTR-H-paniculata_contig7574:2306..24371622930931.9242911-UTR-H-paniculata_contig7574:2306..2437Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7574 2307..2437 +
1691481515.997747-UTR-H-paniculata_contig7574:2306..24371691481515.997747-UTR-H-paniculata_contig7574:2306..2437Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7574 2307..2437 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930931.899591-CDS-H-paniculata_contig7574:1934..23061622930931.899591-CDS-H-paniculata_contig7574:1934..2306Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7574 1935..2306 +
1691481515.9883072-CDS-H-paniculata_contig7574:1934..23061691481515.9883072-CDS-H-paniculata_contig7574:1934..2306Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7574 1935..2306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7574.15560.1

>prot_H-paniculata_contig7574.15560.1 ID=prot_H-paniculata_contig7574.15560.1|Name=mRNA_H-paniculata_contig7574.15560.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp
MKKHQTGQRHKHNTRSSMALSTAAVVNADAGNTELSFKQLWIGVEIEISQ
YMSSLHHNSQAETTLHVYSMYDQTEISNKNSFCANTQFRLVISLFRSAYL
RHDVTIFFNRLEFGHLRFCSSAG*
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mRNA from alignment at H-paniculata_contig7574:1922..2437+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7574.15560.1 ID=mRNA_H-paniculata_contig7574.15560.1|Name=mRNA_H-paniculata_contig7574.15560.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=516bp|location=Sequence derived from alignment at H-paniculata_contig7574:1922..2437+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAGGCCCCCATGAAAAAACATCAAACCGGCCAAAGGCACAAGCACA
ACACGCGGTCGTCGATGGCACTGTCGACTGCGGCAGTCGTGAATGCTGAT
GCTGGTAACACTGAGCTGTCGTTCAAACAGCTCTGGATTGGTGTTGAAAT
AGAGATCTCACAGTACATGTCGTCATTGCATCATAATTCACAGGCCGAAA
CTACTCTCCATGTGTACTCGATGTATGACCAAACTGAAATTTCTAATAAG
AATTCGTTTTGCGCAAATACCCAATTTCGTCTAGTCATTTCATTGTTTCG
TTCTGCATATTTGAGACACGACGTAACTATCTTCTTCAATCGGTTAGAAT
TTGGTCATCTGAGATTTTGTTCTTCCGCCGGGTAAAGTTTGATCACGTGA
GACTTTAGTTTTACCGCCGAGTTAAAATTTGATAGTGTGAGAGAGTGCCG
GTCCTGTGTAATTCCTTACCCAATTACCAATCATGTGAGATGGTGGCGGT
CATTTATATAATCCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig7574:1922..2437+

>mRNA_H-paniculata_contig7574.15560.1 ID=mRNA_H-paniculata_contig7574.15560.1|Name=mRNA_H-paniculata_contig7574.15560.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at H-paniculata_contig7574:1922..2437+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAAAACATCAAACCGGCCAAAGGCACAAGCACAACACGCGGTCGTC
GATGGCACTGTCGACTGCGGCAGTCGTGAATGCTGATGCTGGTAACACTG
AGCTGTCGTTCAAACAGCTCTGGATTGGTGTTGAAATAGAGATCTCACAG
TACATGTCGTCATTGCATCATAATTCACAGGCCGAAACTACTCTCCATGT
GTACTCGATGTATGACCAAACTGAAATTTCTAATAAGAATTCGTTTTGCG
CAAATACCCAATTTCGTCTAGTCATTTCATTGTTTCGTTCTGCATATTTG
AGACACGACGTAACTATCTTCTTCAATCGGTTAGAATTTGGTCATCTGAG
ATTTTGTTCTTCCGCCGGGTAAATGAAAAAACATCAAACCGGCCAAAGGC
ACAAGCACAACACGCGGTCGTCGATGGCACTGTCGACTGCGGCAGTCGTG
AATGCTGATGCTGGTAACACTGAGCTGTCGTTCAAACAGCTCTGGATTGG
TGTTGAAATAGAGATCTCACAGTACATGTCGTCATTGCATCATAATTCAC
AGGCCGAAACTACTCTCCATGTGTACTCGATGTATGACCAAACTGAAATT
TCTAATAAGAATTCGTTTTGCGCAAATACCCAATTTCGTCTAGTCATTTC
ATTGTTTCGTTCTGCATATTTGAGACACGACGTAACTATCTTCTTCAATC
GGTTAGAATTTGGTCATCTGAGATTTTGTTCTTCCGCCGGGTAA
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