mRNA_H-paniculata_contig75171.15500.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig75171.15500.1
Unique NamemRNA_H-paniculata_contig75171.15500.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig75171.15500.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 3.460e-39
Identity = 83/168 (49.40%), Postives = 98/168 (58.33%), Query Frame = 1
Query:    1 LGQFRYRIQHIPGVENLWGDMLSRMRTVEVDRGPDGGSPQVHSRAIAVFAPSTADYTLPGKDVVRDRQDAT-------AQGQPTVVTKVGDAMRGADDLYRVTFRGVPVLWIPRNEHALQARLMVCAHMQEAGHRGVDATVNRLAAYCVWDGMEAKVAEFVRQCLHCL 483
            LGQ+ Y I+HI G  N WGD+LSR  +V          P V  RA AV+APS  D  +P K VVRD Q A        A    +  T VG A   A+ L+RV   G  VLWIP    ALQ RLMVCAHM+EAGHRG  AT+ RL+ YC W  ME  V +FV+QCLHC+
Sbjct: 1184 LGQYDYTIRHISGERNCWGDLLSRWVSV----------PSVSVRAAAVYAPSEPDAAMPSKQVVRDAQQAARSKLGALAGPASSFSTAVGTATLDAEGLFRVGMNGRDVLWIPDQASALQVRLMVCAHMKEAGHRGAVATLQRLSEYCCWFRMEEHVTDFVKQCLHCM 1341          
BLAST of mRNA_H-paniculata_contig75171.15500.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 1.500e-35
Identity = 81/172 (47.09%), Postives = 97/172 (56.40%), Query Frame = 1
Query:    1 LGQFRYRIQHIPGVENLWGDMLSRMRTVEVDRGPDGGSPQVHSRAIAVFAPSTADYTLPGKDVVRDRQDATAQGQPTVVTKVGDAM--------RGADD---LYRVTFRGVPVLWIPRNEHALQARLMVCAHMQEAGHRGVDATVNRLAAYCVWDGMEAKVAEFVRQCLHCL 483
            LGQ+ Y IQHI G  N WGD+LSR   V          P V +R+ AVF PST D  LP K+ +R+ Q        TV   VGD          R A D   L+RV   G  VLWIP     +Q RLM+CAHM+EAGHRGV AT++RL  YC W  M+  V EFV+QCLHC+
Sbjct:  309 LGQYDYTIQHISGERNCWGDLLSRWVNV----------PAVSNRSAAVFMPSTPDCNLPSKNAIREVQQ-------TVRASVGDTNACFTDTLGRVAPDDEGLFRVMIDGRKVLWIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCM 463          
BLAST of mRNA_H-paniculata_contig75171.15500.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 2.020e-35
Identity = 81/172 (47.09%), Postives = 97/172 (56.40%), Query Frame = 1
Query:    1 LGQFRYRIQHIPGVENLWGDMLSRMRTVEVDRGPDGGSPQVHSRAIAVFAPSTADYTLPGKDVVRDRQDATAQGQPTVVTKVGDAM--------RGADD---LYRVTFRGVPVLWIPRNEHALQARLMVCAHMQEAGHRGVDATVNRLAAYCVWDGMEAKVAEFVRQCLHCL 483
            LGQ+ Y IQHI G  N WGD+LSR   V          P V +R+ AVF PST D  LP K+ +R+ Q        TV   VGD          R A D   L+RV   G  VLWIP     +Q RLM+CAHM+EAGHRGV AT++RL  YC W  M+  V EFV+QCLHC+
Sbjct: 1085 LGQYDYTIQHISGERNCWGDLLSRWVNV----------PAVSNRSAAVFMPSTPDCNLPSKNAIREVQQ-------TVRASVGDTNACFTDTLGRVAPDDEGLFRVMIDGRKVLWIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCM 1239          
BLAST of mRNA_H-paniculata_contig75171.15500.1 vs. uniprot
Match: A0A6G0QZJ3_9STRA (Reverse transcriptase domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0QZJ3_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 3.900e-16
Identity = 55/163 (33.74%), Postives = 77/163 (47.24%), Query Frame = 1
Query:    1 LGQFRYRIQHIPGVENLWGDMLSRMRTVEVDRGPDGGSPQVHSRAIAVFAP-STADYTLPGKDVVRDRQDAT-AQGQPTVVTKVGDAMRGADDLYRVTFRGVPVLWIPRNEHALQARLMVCAHMQEAGHRGVDATVNRLAAYCVWDGMEAKVAEFVRQCLHCL 483
            L  F+Y I+H+PG EN+WGD+LSR    +V     G         +   +P    ++  P +  +R  Q+A  A GQ    T++       DD   +       ++IP +   LQ RL V AH   +GHRG  AT   L A   W  + A VA FV  CLHC+
Sbjct:  303 LMSFKYVIEHVPGEENVWGDLLSRWGAGQVLEAHHGAVRVARLAVVQRVSPLEEPEFVWPSESEIRASQEAARASGQIMTGTQL-------DDERHLLVTRTGQVYIPDDAADLQQRLCVVAHAGASGHRGGRATQQALEAVFYWSSLGADVAAFVNGCLHCM 458          
BLAST of mRNA_H-paniculata_contig75171.15500.1 vs. uniprot
Match: A0A6A3I3R6_9STRA (Uncharacterized protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3I3R6_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.100e-15
Identity = 55/163 (33.74%), Postives = 79/163 (48.47%), Query Frame = 1
Query:    1 LGQFRYRIQHIPGVENLWGDMLSRMRTVEVDRGPDGGSPQVHSRAIAVFAP-STADYTLPGKDVVRDRQDAT-AQGQPTVVTKVGDAMRGADDLYRVTFRGVPVLWIPRNEHALQARLMVCAHMQEAGHRGVDATVNRLAAYCVWDGMEAKVAEFVRQCLHCL 483
            L  F+Y I+H+PG EN+WGD+LSR    +V     G         +   +P    ++  P +  +R  Q+A  A GQ    T++       DD + +    +  ++IP +   LQ RL V AH   +GHRG  AT   L A   W  + A VA FV  CLHC+
Sbjct:  480 LMSFKYVIEHVPGEENVWGDLLSRWGAGQVLEAHHGAVRVARLAVVQRVSPLEEPEFVWPSESEIRASQEAARASGQIMTGTQL-------DDEHHL----LVTVYIPDDAADLQQRLCVVAHAGASGHRGGRATQQALEAVFYWSSLGADVAAFVNGCLHCM 631          
BLAST of mRNA_H-paniculata_contig75171.15500.1 vs. uniprot
Match: H3H7B6_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7B6_PHYRM)

HSP 1 Score: 81.3 bits (199), Expect = 6.460e-15
Identity = 57/173 (32.95%), Postives = 76/173 (43.93%), Query Frame = 1
Query:    1 LGQFRYRIQHIPGVENLWGDMLSRMRTVEVDRGPDGGSPQVHSRAIAVFAP-----------STADYTLPGKDVVRDRQDAT-AQGQPTVVTKVGDAMRGADDLYRVTFRGVPVLWIPRNEHALQARLMVCAHMQEAGHRGVDATVNRLAAYCVWDGMEAKVAEFVRQCLHCL 483
            L  FRY I+H+PG EN WGD+LSR           G  P + +   A+ A              AD+  P +  +R  Q A  A   P V           +   ++T  G   +WIP +   LQ RL V AH   +GHRG  AT+  L+    W  M   V  FV +CLHC+
Sbjct:   16 LMSFRYVIEHVPGEENAWGDLLSRW----------GAGPPLEATRTAIRAARLAVVERVSPLEEADFVWPSEQEIRAVQQAAGAAAHPGV-------QWNEERQLQMTSTGQ--VWIPPDSGELQQRLCVVAHAGASGHRGAAATLKSLSTCFFWPTMGPDVTTFVNECLHCM 169          
BLAST of mRNA_H-paniculata_contig75171.15500.1 vs. uniprot
Match: H3H555_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H555_PHYRM)

HSP 1 Score: 81.3 bits (199), Expect = 6.960e-15
Identity = 57/173 (32.95%), Postives = 76/173 (43.93%), Query Frame = 1
Query:    1 LGQFRYRIQHIPGVENLWGDMLSRMRTVEVDRGPDGGSPQVHSRAIAVFAP-----------STADYTLPGKDVVRDRQDAT-AQGQPTVVTKVGDAMRGADDLYRVTFRGVPVLWIPRNEHALQARLMVCAHMQEAGHRGVDATVNRLAAYCVWDGMEAKVAEFVRQCLHCL 483
            L  FRY I+H+PG EN WGD+LSR           G  P + +   A+ A              AD+  P +  +R  Q A  A   P V           +   ++T  G   +WIP +   LQ RL V AH   +GHRG  AT+  L+    W  M   V  FV +CLHC+
Sbjct:  375 LMSFRYVIEHVPGEENAWGDLLSRW----------GAGPPLEATRTAIRAARLAVVERVSPLEEADFVWPSEQEIRAVQQAAGAAAHPGV-------QWNEERQLQMTSTGQ--VWIPPDSGELQQRLCVVAHAGASGHRGAAATLKSLSTCFFWPTMGPDVTTFVNECLHCM 528          
BLAST of mRNA_H-paniculata_contig75171.15500.1 vs. uniprot
Match: H3H4S7_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H4S7_PHYRM)

HSP 1 Score: 81.3 bits (199), Expect = 7.310e-15
Identity = 57/173 (32.95%), Postives = 76/173 (43.93%), Query Frame = 1
Query:    1 LGQFRYRIQHIPGVENLWGDMLSRMRTVEVDRGPDGGSPQVHSRAIAVFAP-----------STADYTLPGKDVVRDRQDAT-AQGQPTVVTKVGDAMRGADDLYRVTFRGVPVLWIPRNEHALQARLMVCAHMQEAGHRGVDATVNRLAAYCVWDGMEAKVAEFVRQCLHCL 483
            L  FRY I+H+PG EN WGD+LSR           G  P + +   A+ A              AD+  P +  +R  Q A  A   P V           +   ++T  G   +WIP +   LQ RL V AH   +GHRG  AT+  L+    W  M   V  FV +CLHC+
Sbjct: 1103 LMSFRYVIEHVPGEENAWGDLLSRW----------GAGPPLEATRTAIRAARLAVVERVSPLEEADFVWPSEQEIRAVQQAAGAAAHPGV-------QWNEERQLQMTSTGQ--VWIPPDSGELQQRLCVVAHAGASGHRGAAATLKSLSTCFFWPTMGPDVTTFVNECLHCM 1256          
BLAST of mRNA_H-paniculata_contig75171.15500.1 vs. uniprot
Match: A0A6H5L028_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L028_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.340e-14
Identity = 48/131 (36.64%), Postives = 69/131 (52.67%), Query Frame = 1
Query:   43 ENLWGDMLSRMRTVEVDRGPD----GGSP----QVHSRAIAVFAPSTADYTLPGKDVVRDRQDAT-------AQGQPTVVTKVGDAMRGADDLYRVTFRGVPVLWIPRNEHALQARLMVCAHMQEAGHRGV 390
            E  WG  L+++   E++RG         P     V  RA+A FAPS  D T+P K+V+R  Q +        A G    +   G A++  + ++R+  +G  V+WIP +   L+ RLMVCAHMQ AGHR V
Sbjct:  731 EEHWGSFLTQVPQEELERGVSVEHMTHEPLAFLSVKVRAVAGFAPSKPDDTMPSKEVIRRVQHSAREQVRPRAHGAEVFMAPHGKAVKDGEGIFRIKVKGRVVMWIPEDAKELKQRLMVCAHMQGAGHRDV 861          
BLAST of mRNA_H-paniculata_contig75171.15500.1 vs. uniprot
Match: A0A6A3ME06_9STRA (Uncharacterized protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3ME06_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.820e-14
Identity = 53/163 (32.52%), Postives = 75/163 (46.01%), Query Frame = 1
Query:    1 LGQFRYRIQHIPGVENLWGDMLSRMRTVEVDRGPDGGSPQVHSRAIAVFAP-STADYTLPGKDVVRDRQDAT-AQGQPTVVTKVGDAMRGADDLYRVTFRGVPVLWIPRNEHALQARLMVCAHMQEAGHRGVDATVNRLAAYCVWDGMEAKVAEFVRQCLHCL 483
            L  F+Y I+H+PG EN+WGD+LS     +V     G         +   +P    ++  P +  +R  Q+A  A GQ    T++       DD   +       ++IP +   LQ RL V AH   +GH G  AT   L A   W  + A VA FV  CLHC+
Sbjct:  768 LMSFKYVIEHVPGEENVWGDLLSCWGAGQVLEAQQGALRVARLAVVQRVSPLEEPEFVWPSESEIRASQEAARASGQIMTGTQI-------DDERHLLVTRTGQVYIPDDAADLQQRLCVVAHAGASGHIGGRATQQALEAVFYWSSLGADVAAFVNGCLHCM 923          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig75171.15500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5A5_9PHAE3.460e-3949.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCX8_9PHAE1.500e-3547.09Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L7F6_9PHAE2.020e-3547.09Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6G0QZJ3_9STRA3.900e-1633.74Reverse transcriptase domain-containing protein n=... [more]
A0A6A3I3R6_9STRA1.100e-1533.74Uncharacterized protein n=3 Tax=Phytophthora rubi ... [more]
H3H7B6_PHYRM6.460e-1532.95Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
H3H555_PHYRM6.960e-1532.95Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
H3H4S7_PHYRM7.310e-1532.95Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A6H5L028_9PHAE1.340e-1436.64CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6A3ME06_9STRA1.820e-1432.52Uncharacterized protein n=3 Tax=Phytophthora rubi ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig75171contigH-paniculata_contig75171:4..486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue3.2e-14
Seed eggNOG ortholog67593.Physo134318
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition
EggNOG OGs2QT1S@2759,COG2801@1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size483
Cds size483
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930923.1268244-CDS-H-paniculata_contig75171:3..4861622930923.1268244-CDS-H-paniculata_contig75171:3..486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig75171 4..486 +
1691481512.1499913-CDS-H-paniculata_contig75171:3..4861691481512.1499913-CDS-H-paniculata_contig75171:3..486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig75171 4..486 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig75171.15500.1prot_H-paniculata_contig75171.15500.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig75171 4..486 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig75171.15500.1

>prot_H-paniculata_contig75171.15500.1 ID=prot_H-paniculata_contig75171.15500.1|Name=mRNA_H-paniculata_contig75171.15500.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=161bp
LGQFRYRIQHIPGVENLWGDMLSRMRTVEVDRGPDGGSPQVHSRAIAVFA
PSTADYTLPGKDVVRDRQDATAQGQPTVVTKVGDAMRGADDLYRVTFRGV
PVLWIPRNEHALQARLMVCAHMQEAGHRGVDATVNRLAAYCVWDGMEAKV
AEFVRQCLHCL
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mRNA from alignment at H-paniculata_contig75171:4..486+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig75171.15500.1 ID=mRNA_H-paniculata_contig75171.15500.1|Name=mRNA_H-paniculata_contig75171.15500.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=483bp|location=Sequence derived from alignment at H-paniculata_contig75171:4..486+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGGACAGTTCCGTTACCGAATCCAGCATATTCCCGGCGTGGAAAACCT GTGGGGAGACATGCTGTCGAGGATGAGGACTGTAGAAGTCGACAGAGGAC CGGACGGCGGGAGTCCACAGGTGCACTCGCGGGCCATCGCGGTGTTTGCA CCTTCTACAGCGGACTACACGCTGCCTGGCAAGGATGTGGTGCGAGACCG GCAGGACGCGACCGCGCAGGGGCAGCCGACGGTGGTTACCAAGGTGGGTG ATGCGATGCGCGGGGCTGATGATCTGTACCGGGTGACTTTTCGGGGGGTG CCTGTGCTGTGGATTCCCCGCAACGAGCACGCGCTGCAGGCGCGGCTCAT GGTATGCGCCCACATGCAGGAGGCGGGCCACCGGGGCGTGGACGCTACGG TCAACCGCCTTGCCGCATACTGCGTGTGGGACGGGATGGAGGCGAAAGTG GCGGAGTTTGTCCGGCAGTGTTTACACTGTTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig75171:4..486+

>mRNA_H-paniculata_contig75171.15500.1 ID=mRNA_H-paniculata_contig75171.15500.1|Name=mRNA_H-paniculata_contig75171.15500.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=966bp|location=Sequence derived from alignment at H-paniculata_contig75171:4..486+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGGACAGTTCCGTTACCGAATCCAGCATATTCCCGGCGTGGAAAACCT
GTGGGGAGACATGCTGTCGAGGATGAGGACTGTAGAAGTCGACAGAGGAC
CGGACGGCGGGAGTCCACAGGTGCACTCGCGGGCCATCGCGGTGTTTGCA
CCTTCTACAGCGGACTACACGCTGCCTGGCAAGGATGTGGTGCGAGACCG
GCAGGACGCGACCGCGCAGGGGCAGCCGACGGTGGTTACCAAGGTGGGTG
ATGCGATGCGCGGGGCTGATGATCTGTACCGGGTGACTTTTCGGGGGGTG
CCTGTGCTGTGGATTCCCCGCAACGAGCACGCGCTGCAGGCGCGGCTCAT
GGTATGCGCCCACATGCAGGAGGCGGGCCACCGGGGCGTGGACGCTACGG
TCAACCGCCTTGCCGCATACTGCGTGTGGGACGGGATGGAGGCGAAAGTG
GCGGAGTTTGTCCGGCAGTGTTTACACTGTTTGCTCGGACAGTTCCGTTA
CCGAATCCAGCATATTCCCGGCGTGGAAAACCTGTGGGGAGACATGCTGT
CGAGGATGAGGACTGTAGAAGTCGACAGAGGACCGGACGGCGGGAGTCCA
CAGGTGCACTCGCGGGCCATCGCGGTGTTTGCACCTTCTACAGCGGACTA
CACGCTGCCTGGCAAGGATGTGGTGCGAGACCGGCAGGACGCGACCGCGC
AGGGGCAGCCGACGGTGGTTACCAAGGTGGGTGATGCGATGCGCGGGGCT
GATGATCTGTACCGGGTGACTTTTCGGGGGGTGCCTGTGCTGTGGATTCC
CCGCAACGAGCACGCGCTGCAGGCGCGGCTCATGGTATGCGCCCACATGC
AGGAGGCGGGCCACCGGGGCGTGGACGCTACGGTCAACCGCCTTGCCGCA
TACTGCGTGTGGGACGGGATGGAGGCGAAAGTGGCGGAGTTTGTCCGGCA
GTGTTTACACTGTTTG
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