mRNA_H-paniculata_contig75171.15500.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig75171.15500.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 150 bits (380), Expect = 3.460e-39 Identity = 83/168 (49.40%), Postives = 98/168 (58.33%), Query Frame = 1
Query: 1 LGQFRYRIQHIPGVENLWGDMLSRMRTVEVDRGPDGGSPQVHSRAIAVFAPSTADYTLPGKDVVRDRQDAT-------AQGQPTVVTKVGDAMRGADDLYRVTFRGVPVLWIPRNEHALQARLMVCAHMQEAGHRGVDATVNRLAAYCVWDGMEAKVAEFVRQCLHCL 483
LGQ+ Y I+HI G N WGD+LSR +V P V RA AV+APS D +P K VVRD Q A A + T VG A A+ L+RV G VLWIP ALQ RLMVCAHM+EAGHRG AT+ RL+ YC W ME V +FV+QCLHC+
Sbjct: 1184 LGQYDYTIRHISGERNCWGDLLSRWVSV----------PSVSVRAAAVYAPSEPDAAMPSKQVVRDAQQAARSKLGALAGPASSFSTAVGTATLDAEGLFRVGMNGRDVLWIPDQASALQVRLMVCAHMKEAGHRGAVATLQRLSEYCCWFRMEEHVTDFVKQCLHCM 1341
BLAST of mRNA_H-paniculata_contig75171.15500.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE) HSP 1 Score: 140 bits (352), Expect = 1.500e-35 Identity = 81/172 (47.09%), Postives = 97/172 (56.40%), Query Frame = 1
Query: 1 LGQFRYRIQHIPGVENLWGDMLSRMRTVEVDRGPDGGSPQVHSRAIAVFAPSTADYTLPGKDVVRDRQDATAQGQPTVVTKVGDAM--------RGADD---LYRVTFRGVPVLWIPRNEHALQARLMVCAHMQEAGHRGVDATVNRLAAYCVWDGMEAKVAEFVRQCLHCL 483
LGQ+ Y IQHI G N WGD+LSR V P V +R+ AVF PST D LP K+ +R+ Q TV VGD R A D L+RV G VLWIP +Q RLM+CAHM+EAGHRGV AT++RL YC W M+ V EFV+QCLHC+
Sbjct: 309 LGQYDYTIQHISGERNCWGDLLSRWVNV----------PAVSNRSAAVFMPSTPDCNLPSKNAIREVQQ-------TVRASVGDTNACFTDTLGRVAPDDEGLFRVMIDGRKVLWIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCM 463
BLAST of mRNA_H-paniculata_contig75171.15500.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 140 bits (352), Expect = 2.020e-35 Identity = 81/172 (47.09%), Postives = 97/172 (56.40%), Query Frame = 1
Query: 1 LGQFRYRIQHIPGVENLWGDMLSRMRTVEVDRGPDGGSPQVHSRAIAVFAPSTADYTLPGKDVVRDRQDATAQGQPTVVTKVGDAM--------RGADD---LYRVTFRGVPVLWIPRNEHALQARLMVCAHMQEAGHRGVDATVNRLAAYCVWDGMEAKVAEFVRQCLHCL 483
LGQ+ Y IQHI G N WGD+LSR V P V +R+ AVF PST D LP K+ +R+ Q TV VGD R A D L+RV G VLWIP +Q RLM+CAHM+EAGHRGV AT++RL YC W M+ V EFV+QCLHC+
Sbjct: 1085 LGQYDYTIQHISGERNCWGDLLSRWVNV----------PAVSNRSAAVFMPSTPDCNLPSKNAIREVQQ-------TVRASVGDTNACFTDTLGRVAPDDEGLFRVMIDGRKVLWIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCM 1239
BLAST of mRNA_H-paniculata_contig75171.15500.1 vs. uniprot
Match: A0A6G0QZJ3_9STRA (Reverse transcriptase domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0QZJ3_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 3.900e-16 Identity = 55/163 (33.74%), Postives = 77/163 (47.24%), Query Frame = 1
Query: 1 LGQFRYRIQHIPGVENLWGDMLSRMRTVEVDRGPDGGSPQVHSRAIAVFAP-STADYTLPGKDVVRDRQDAT-AQGQPTVVTKVGDAMRGADDLYRVTFRGVPVLWIPRNEHALQARLMVCAHMQEAGHRGVDATVNRLAAYCVWDGMEAKVAEFVRQCLHCL 483
L F+Y I+H+PG EN+WGD+LSR +V G + +P ++ P + +R Q+A A GQ T++ DD + ++IP + LQ RL V AH +GHRG AT L A W + A VA FV CLHC+
Sbjct: 303 LMSFKYVIEHVPGEENVWGDLLSRWGAGQVLEAHHGAVRVARLAVVQRVSPLEEPEFVWPSESEIRASQEAARASGQIMTGTQL-------DDERHLLVTRTGQVYIPDDAADLQQRLCVVAHAGASGHRGGRATQQALEAVFYWSSLGADVAAFVNGCLHCM 458
BLAST of mRNA_H-paniculata_contig75171.15500.1 vs. uniprot
Match: A0A6A3I3R6_9STRA (Uncharacterized protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3I3R6_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 1.100e-15 Identity = 55/163 (33.74%), Postives = 79/163 (48.47%), Query Frame = 1
Query: 1 LGQFRYRIQHIPGVENLWGDMLSRMRTVEVDRGPDGGSPQVHSRAIAVFAP-STADYTLPGKDVVRDRQDAT-AQGQPTVVTKVGDAMRGADDLYRVTFRGVPVLWIPRNEHALQARLMVCAHMQEAGHRGVDATVNRLAAYCVWDGMEAKVAEFVRQCLHCL 483
L F+Y I+H+PG EN+WGD+LSR +V G + +P ++ P + +R Q+A A GQ T++ DD + + + ++IP + LQ RL V AH +GHRG AT L A W + A VA FV CLHC+
Sbjct: 480 LMSFKYVIEHVPGEENVWGDLLSRWGAGQVLEAHHGAVRVARLAVVQRVSPLEEPEFVWPSESEIRASQEAARASGQIMTGTQL-------DDEHHL----LVTVYIPDDAADLQQRLCVVAHAGASGHRGGRATQQALEAVFYWSSLGADVAAFVNGCLHCM 631
BLAST of mRNA_H-paniculata_contig75171.15500.1 vs. uniprot
Match: H3H7B6_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7B6_PHYRM) HSP 1 Score: 81.3 bits (199), Expect = 6.460e-15 Identity = 57/173 (32.95%), Postives = 76/173 (43.93%), Query Frame = 1
Query: 1 LGQFRYRIQHIPGVENLWGDMLSRMRTVEVDRGPDGGSPQVHSRAIAVFAP-----------STADYTLPGKDVVRDRQDAT-AQGQPTVVTKVGDAMRGADDLYRVTFRGVPVLWIPRNEHALQARLMVCAHMQEAGHRGVDATVNRLAAYCVWDGMEAKVAEFVRQCLHCL 483
L FRY I+H+PG EN WGD+LSR G P + + A+ A AD+ P + +R Q A A P V + ++T G +WIP + LQ RL V AH +GHRG AT+ L+ W M V FV +CLHC+
Sbjct: 16 LMSFRYVIEHVPGEENAWGDLLSRW----------GAGPPLEATRTAIRAARLAVVERVSPLEEADFVWPSEQEIRAVQQAAGAAAHPGV-------QWNEERQLQMTSTGQ--VWIPPDSGELQQRLCVVAHAGASGHRGAAATLKSLSTCFFWPTMGPDVTTFVNECLHCM 169
BLAST of mRNA_H-paniculata_contig75171.15500.1 vs. uniprot
Match: H3H555_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H555_PHYRM) HSP 1 Score: 81.3 bits (199), Expect = 6.960e-15 Identity = 57/173 (32.95%), Postives = 76/173 (43.93%), Query Frame = 1
Query: 1 LGQFRYRIQHIPGVENLWGDMLSRMRTVEVDRGPDGGSPQVHSRAIAVFAP-----------STADYTLPGKDVVRDRQDAT-AQGQPTVVTKVGDAMRGADDLYRVTFRGVPVLWIPRNEHALQARLMVCAHMQEAGHRGVDATVNRLAAYCVWDGMEAKVAEFVRQCLHCL 483
L FRY I+H+PG EN WGD+LSR G P + + A+ A AD+ P + +R Q A A P V + ++T G +WIP + LQ RL V AH +GHRG AT+ L+ W M V FV +CLHC+
Sbjct: 375 LMSFRYVIEHVPGEENAWGDLLSRW----------GAGPPLEATRTAIRAARLAVVERVSPLEEADFVWPSEQEIRAVQQAAGAAAHPGV-------QWNEERQLQMTSTGQ--VWIPPDSGELQQRLCVVAHAGASGHRGAAATLKSLSTCFFWPTMGPDVTTFVNECLHCM 528
BLAST of mRNA_H-paniculata_contig75171.15500.1 vs. uniprot
Match: H3H4S7_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H4S7_PHYRM) HSP 1 Score: 81.3 bits (199), Expect = 7.310e-15 Identity = 57/173 (32.95%), Postives = 76/173 (43.93%), Query Frame = 1
Query: 1 LGQFRYRIQHIPGVENLWGDMLSRMRTVEVDRGPDGGSPQVHSRAIAVFAP-----------STADYTLPGKDVVRDRQDAT-AQGQPTVVTKVGDAMRGADDLYRVTFRGVPVLWIPRNEHALQARLMVCAHMQEAGHRGVDATVNRLAAYCVWDGMEAKVAEFVRQCLHCL 483
L FRY I+H+PG EN WGD+LSR G P + + A+ A AD+ P + +R Q A A P V + ++T G +WIP + LQ RL V AH +GHRG AT+ L+ W M V FV +CLHC+
Sbjct: 1103 LMSFRYVIEHVPGEENAWGDLLSRW----------GAGPPLEATRTAIRAARLAVVERVSPLEEADFVWPSEQEIRAVQQAAGAAAHPGV-------QWNEERQLQMTSTGQ--VWIPPDSGELQQRLCVVAHAGASGHRGAAATLKSLSTCFFWPTMGPDVTTFVNECLHCM 1256
BLAST of mRNA_H-paniculata_contig75171.15500.1 vs. uniprot
Match: A0A6H5L028_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L028_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 1.340e-14 Identity = 48/131 (36.64%), Postives = 69/131 (52.67%), Query Frame = 1
Query: 43 ENLWGDMLSRMRTVEVDRGPD----GGSP----QVHSRAIAVFAPSTADYTLPGKDVVRDRQDAT-------AQGQPTVVTKVGDAMRGADDLYRVTFRGVPVLWIPRNEHALQARLMVCAHMQEAGHRGV 390
E WG L+++ E++RG P V RA+A FAPS D T+P K+V+R Q + A G + G A++ + ++R+ +G V+WIP + L+ RLMVCAHMQ AGHR V
Sbjct: 731 EEHWGSFLTQVPQEELERGVSVEHMTHEPLAFLSVKVRAVAGFAPSKPDDTMPSKEVIRRVQHSAREQVRPRAHGAEVFMAPHGKAVKDGEGIFRIKVKGRVVMWIPEDAKELKQRLMVCAHMQGAGHRDV 861
BLAST of mRNA_H-paniculata_contig75171.15500.1 vs. uniprot
Match: A0A6A3ME06_9STRA (Uncharacterized protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3ME06_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 1.820e-14 Identity = 53/163 (32.52%), Postives = 75/163 (46.01%), Query Frame = 1
Query: 1 LGQFRYRIQHIPGVENLWGDMLSRMRTVEVDRGPDGGSPQVHSRAIAVFAP-STADYTLPGKDVVRDRQDAT-AQGQPTVVTKVGDAMRGADDLYRVTFRGVPVLWIPRNEHALQARLMVCAHMQEAGHRGVDATVNRLAAYCVWDGMEAKVAEFVRQCLHCL 483
L F+Y I+H+PG EN+WGD+LS +V G + +P ++ P + +R Q+A A GQ T++ DD + ++IP + LQ RL V AH +GH G AT L A W + A VA FV CLHC+
Sbjct: 768 LMSFKYVIEHVPGEENVWGDLLSCWGAGQVLEAQQGALRVARLAVVQRVSPLEEPEFVWPSESEIRASQEAARASGQIMTGTQI-------DDERHLLVTRTGQVYIPDDAADLQQRLCVVAHAGASGHIGGRATQQALEAVFYWSSLGADVAAFVNGCLHCM 923 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig75171.15500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig75171.15500.1 >prot_H-paniculata_contig75171.15500.1 ID=prot_H-paniculata_contig75171.15500.1|Name=mRNA_H-paniculata_contig75171.15500.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=161bp LGQFRYRIQHIPGVENLWGDMLSRMRTVEVDRGPDGGSPQVHSRAIAVFAback to top mRNA from alignment at H-paniculata_contig75171:4..486+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig75171.15500.1 ID=mRNA_H-paniculata_contig75171.15500.1|Name=mRNA_H-paniculata_contig75171.15500.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=483bp|location=Sequence derived from alignment at H-paniculata_contig75171:4..486+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig75171:4..486+ >mRNA_H-paniculata_contig75171.15500.1 ID=mRNA_H-paniculata_contig75171.15500.1|Name=mRNA_H-paniculata_contig75171.15500.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=966bp|location=Sequence derived from alignment at H-paniculata_contig75171:4..486+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |