mRNA_H-paniculata_contig7514.15496.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7514.15496.1
Unique NamemRNA_H-paniculata_contig7514.15496.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7514.15496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7514contigH-paniculata_contig7514:5193..10693 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size562
Cds size561
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7514.15496.1prot_H-paniculata_contig7514.15496.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7514 5193..10693 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930922.6341228-CDS-H-paniculata_contig7514:5192..55191622930922.6341228-CDS-H-paniculata_contig7514:5192..5519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7514 5193..5519 -
1691481511.8870525-CDS-H-paniculata_contig7514:5192..55191691481511.8870525-CDS-H-paniculata_contig7514:5192..5519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7514 5193..5519 -
1622930922.646654-CDS-H-paniculata_contig7514:8695..87971622930922.646654-CDS-H-paniculata_contig7514:8695..8797Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7514 8696..8797 -
1691481511.906463-CDS-H-paniculata_contig7514:8695..87971691481511.906463-CDS-H-paniculata_contig7514:8695..8797Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7514 8696..8797 -
1622930922.66075-CDS-H-paniculata_contig7514:10561..106931622930922.66075-CDS-H-paniculata_contig7514:10561..10693Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7514 10562..10693 -
1691481511.9250524-CDS-H-paniculata_contig7514:10561..106931691481511.9250524-CDS-H-paniculata_contig7514:10561..10693Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7514 10562..10693 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7514.15496.1

>prot_H-paniculata_contig7514.15496.1 ID=prot_H-paniculata_contig7514.15496.1|Name=mRNA_H-paniculata_contig7514.15496.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=187bp
MDGSHGGGGQYNSQHQGNHQMKGKGGRKEKGGGGRGRMFRGNGQGMGGRH
GHAHMGQGGYMNPAMAMQASPDGSPMGQAMMARYGMQVPPGGPAAAQQAA
AQQQAAAAYNAQVAHQNSYGMMHLNNAMSMMSMGAPGGQQQQPGGGGRAD
GPEVAPQPGGPGQQGGPFGVMPGVGGVGGGGTGPRSS
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mRNA from alignment at H-paniculata_contig7514:5193..10693-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7514.15496.1 ID=mRNA_H-paniculata_contig7514.15496.1|Name=mRNA_H-paniculata_contig7514.15496.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5501bp|location=Sequence derived from alignment at H-paniculata_contig7514:5193..10693- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGGGTCTCACGGGGGGGGTGGGCAGTACAACAGCCAGCACCAGGG
CAATCACCAAATGAAGGGGAAAGGAGGGCGCAAAGAGAAGGGCGGTGGAG
GACGCGGAAGAATGTTTCGGGGTAACGGCCAGGTGATGATATTGGTGTAG
TCTGGGTACATATACTACCACCGAGGAAGTTCCCATTTCGAACTTGGCAT
AGTGTCGTGATTGAAATCTACGTGTTGGTATTGGGGTCGTCACGGGCTCG
TACTAGGAGTGAATTCCCGGTATAATGAACTTGAATTTATTGCTCGAGAC
GAGAGGTTGATGATGTTTTTAGTTACAATACGATCCGTATGCTGGTTCTG
TGCTGTGACAACCTCGTCGTGATTTATCGTCTGGGGGAAAACGTTTTTCC
CACCCCCAACTTGAAGTATTAACCGAAAAAGCCTTCGTAAAGGTCTAGAA
CTTTCGGAGAATATTATATGCTCTATTGTATAGATGGTTTAATATTGGGT
TTCCATCAACCGTTCAGCCCACGCTGCCTCGTGTAAGGAATAGAACAGGA
AAATCAGTAATTTTTCACCAAGCTAGCCCTGACTTGACATGTGCCCCCTC
TCTTTGCCCATCCAGACTGAGTGCACATTTTAAAATTTACGTCCCGGAAG
GATTAAATACAACAGTATAGTGGCAAAACCTGGTTCCAACTTTCCACGAG
CGTGAAGACGTAATTTATGTCGAGTGTCCGTTTTTCTCATGCGTTGCTGT
GTGATGAGACCGGTAACACGTGGAAGTTACGAGTTTCACCTTTCGATTGA
TATCAGGAAGTATTCTCTACTTGGATCGGCCGAACCGGGGTGGTTCCTAC
CCCGCAGAGGAATAATTAACTCTGTTGCGTTAAAGGAAATGTAGACATCG
GTAAAGGTTTTCGCCTGACCGTTCCGGGGGTTGGAAAAATATAATCAAGA
AGTATATCGTGGTTCTCTTGTGTGTTTTCATTGATGTTTGCAAATGGGTC
CCTTTCAAATTCTCTTTTCACGAGAAACGTGCCAGGGTGAAGAAGCAAAA
AAATCATGATTATTTTTTATATTTTTGGTTACCCCAGATGAATATTTGCT
CCAAATCACCATGTGTCCATCGTTTTATCACGACCAATTCTGAGATGAAC
AACTGCAGCTGGAGTACTGATCATCCCGAGTCTCTATCCAGGGATGGGTA
CTGCATGGACTCTTCTGTTGACTCTGGCTACAATAGATGATTTAGCTTTG
AGTCTATCGTTCTAGAGCGCACAGCATCAGTGTCTACGTTTCAGGTCCAT
TTGATGAAAGTTGGACTCGTCGACACATGTATTATTACCTTCGAGACATC
ATTGGATCTGATAGTAATATGTTTCGGGACCTGGAAGATTGGGTGGGAAT
ATGTGAACTAAATCATAGCCTTTCTGACTGGAGGAGTACTATGTATCATG
AAGACGACCTTGTGTGTGCGTCAGCTTAAAGTATGTCATGGGGCTGAAAA
AGGGGGTCTTGCGACGCGCGAATCTGTTGATTTCTTGGTTCTGCTGTTCG
GCGTGTGTCGTGGTGTTTTTTTGTTTTTTTTAACCCCCGGAAGGCTGAAG
CAAAAACCTTGACTGATGCTTCCATGAATATGTTACCGAAGTATGTCTAC
ATTTCCTTTACAGAACAGAGTTATTTGTTCCTCTACGTGATAGAAGGCAC
TCCGGTCCGGCCGAACCAAGTACGCAGTGTGGGGGTTACACCCACTAGCA
GAATTCTGACTAATCTACCGCGCCGTATAGGAGAATCTTGAATTAGTATT
GTAGTCGTCCGGCTTGGAATTTTTTTTCTAACCGAAACCCTATGTTGTAT
TCCATCCATCTCATCACGTGGGACTCTGCTTTGTGTGCGTCTCCAGGGGA
TGGGAGGACGTCATGGGCATGCGCACATGGGCCAAGGTGGCTATATGAAT
CCCGCAATGGCGATGCAGGCGTCACCAGATGGATCACCAATGGGCCAGGT
GCGGTTGGTTTCTAGTGTACGATGTTGAGCCAAACAATTGCTGGCGTTGT
GCCGACGTCGGAGGTGATCATGGTGAATACAGGAATTTAAGATTTTTGGC
CTCCATCATGCTAGTACAGGAGAACGTGGATGTTACTCTCGAGGTTCCAA
ATGCTGTTTCGGAACATGAACATTGGACTTGGCCGTGCGCGCGGAAAAAA
ATTCAGTATATTTGTACAATTCCAGGTTGTCTCTCACAAGAGGTCTCTAT
TATCTTCGAATTTGACACGGGCTGCTGCTCTGAGCCAAGCATCGTCTTTA
TTTTCGATGCTTTAAATGAACCGGGTCGTGTCTGTATAGTTCTGGACAGA
CAGAAAATGAGATCGCATCGGATGATGGCTGAGAGCAGTAGACCATGTTC
TACGTTGGCATACTAATCGTACCATCTATCTCGTGAAATACACCGCTTTC
TTATTCGCAAGAAGTGCACTACCTAGGTGCCTCCGAAGAGCTTACGATGT
GACGCGTCCAGAAGGCGCAACACAACTTGAAAACCGTCATGTCTTCAATA
TAAAGTATTTTCCACTGGGTATCGAACGATATTTTGCGTCATTATAAGGA
TGAGTGCAACATTTTGTTTTGCAGCTGTCGTTCTTAATTTCAAGGATATA
CATCAATTCCCCATCTTTTGTCATTACTTTTAAAATCATTATTTCAATGA
CTGTGCCGAGATTATTTTTTTTCTCCTTGTCAAGACGTTGCCCGAAAATC
TTCTATTCCCATGGTAAATCCAGACGTTTGGCTATACCTTCCTGGTTTTT
CAATATGTTCGACAACAACCTCAAGTATGTTTACTGTGTGCACTCACGGC
ACTGGGTAAAAATCAGCCCTCATTTTTTTGAGGGGTGTTCTCCCTATTGC
GTGGTATTTTTTTTTCCGGATATTATGGAACCACCCCTTTGAAGAGGCAC
TATACAGAAAAATGGTTCCGAAAGCGTTAATCAATAAAGCTACATTCGGT
TAGGGCAACATCTGGGCACTAGTTTTTCCACGTCAACTGGATACGATCGC
AACCATCATTTTTTATCGTAATCTGGAATCGATTTACTGTGGTAGAGTAC
TGTGCAGGTTATTTGAAGGATGACAGGAGCGGCACTTGAAATTCGCAAAA
ACTAACGTCAATATATCATCGTCTTGATCGCGATGCCCTTCTATTAATTC
TTTCTCAGTGGTTCTCCTTTCGTAACCGGTTTCTTAACTTTCGAAAACTG
TACGGTGTAACAGAAAAATACTCCACGCCAAATTCGTCGTACGTCTCAGG
ATATGGCTAGGGAGTAAAATGTCAGGAACAGCGTGGGGGTTGCGCCACGT
CTAGAAGGGATGATTGACTTGAGATGACGCTGTGAAAATTACCTCGTAAT
GCCGCACGAGGCAAGCGTCAACTTCAGGGAGGTTTCACCTCAGTTCTCAG
TGCCAAGAGTAACACGGTGGTCGAGAAGTAATGGTTTTTCAAAACGACGA
AACCTACAATGCGTGCGAAGTTGTCCACGTGTAGGAACACGGCCTGGGAC
ATTCAGCTATCCATTTTTTGTTGTCAATCTCAGGAGGCCAGGGTGAAATA
TTGTCTGATTCTTCAACTGGGAATTCTAGCCCAGTTTTTGTACACTAGTT
ACATATCGATGTCTCGATTAATTTTCACCTGGTCAAGGGATCCGTCGTCG
AGCACGTTGGTGCTTCTGGGCGGAAATTTCTTGCAGCTTGGGCCGCGATA
TTCCACCATCAAACACACGAGTTGAAATGAGACCCGCACCTGTCCAAACC
CTTCTCATGCCTTCTAGTTTTTGCCCAATACACGTGTTACCTGAGCTATC
AGCGTCGAAATTCCCGTGAAAAGGCAGATTATTTTGATTATTATTCACAC
ACTAGCCTGATCCCCTCGTACCTGTAGACTCTGGGTAGTGTGATAGAACT
GCAAAAAAGTATATCGTAGCAGAATGAAGCAAAAAAGATATAGAGTCGTG
GAAAACAGGAACAATATCTGGAAAAATCGCACAGAAAGTGAACAAAATAA
GCAAGGCGAAACAAGAGCCGAAGCTGAAGTAAAAGACACGCGCGGAGGCT
ACACGGTCAAATAGGGTGGACTGTCAGCAAAGAAGCAAACGAGTCGAAGT
ACTAAAACGCGTGCCCTCGCTACCTCGGCTGCTTTCCACGCAGTATGTAA
CGAGTGGCTCCTTCCTTTACGTGAGCGTGCCTGTAGGCGGTATCAACGTT
TGCATATTGCTACCCACGTTGTGATTGGGATGTTCAGGTTCCCCAAGTCA
TTTATTATACATGGTGGCCATTGCCGCGCAGGCTGGACCCTGTATCTTGT
TTCTCCGTCAAGTCCGGAAGCGTTCGTCCCCCTTGTGCAAGTTGTCGCTT
CATAGTCAACGTGATGCTCTCACACTATCTCCAGTGCGTGTCGGTAGGAC
AGACCGTGATATGTAGGGCTTTGTCATTGATAAGGCATCACAGCAGGAGA
CGACGGTGATACTCGCCGAACTGAGCGTAGTACATGTCGGTGAAGATCTG
CGTAGAGCACCCGTACATGAGAAAAATTCACATTTACTGGTGCTCCACGT
TACGAGCGTCTGATTGGATCGAAGTTGGGAAATCTTCCGTCGGGTAAGAT
AACTTCTACCCGCACTTGAATCGCCCGAGCTGGCGAACCACGTTTTGGAT
GATTTCAAATTGACATTATTGCGGGATACGAGAAAGGTTTAGGTGGACTC
GACCCTCAGACAACGATATCATCCACGACTGACGGTTTGAGGGCCATTCT
TGTATCCATAGTATCGTGGACACCAATTCTGGAATGTTGAGGAATGATGG
TATCTTGCCAAGTCGCTAATGATTTCGATCAAACAGTCGTTGTCTGTTCC
CGTACAACCATATTCCCGACAAGACGGTTAACCCTTATATTGTATTGTTT
TCTTTCAAAATGGTTGTATCATTGACAGAAAAAGTGTCGAGGTGTTAAGT
ATGCTGTCAAAATTATCCTACACGGAGGACAATACCTCGACGTAGATCCT
GACTATCAAATGTGCTCCAATTTCAGTCCTCTAAACATGTTCGCACACGA
CTTGTATAGATCGCTTCTTGACGCACTTCCTTCCCTTCCCTCCGTCGATT
GTGATTCTCGTGCGATCTTTCCAGGCGATGATGGCGCGTTACGGGATGCA
AGTGCCACCCGGCGGGCCTGCGGCCGCCCAGCAAGCGGCCGCCCAGCAAC
AAGCGGCGGCGGCATACAATGCTCAGGTGGCGCACCAAAACAGCTACGGG
ATGATGCACCTCAATAACGCCATGTCGATGATGAGCATGGGTGCCCCAGG
CGGCCAGCAACAGCAGCCGGGTGGTGGAGGGCGAGCAGATGGCCCGGAGG
TAGCACCTCAACCGGGTGGACCGGGTCAGCAGGGCGGTCCCTTCGGTGTA
ATGCCGGGTGTTGGAGGGGTGGGAGGCGGCGGAACTGGGCCACGATCTTC
C
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Coding sequence (CDS) from alignment at H-paniculata_contig7514:5193..10693-

>mRNA_H-paniculata_contig7514.15496.1 ID=mRNA_H-paniculata_contig7514.15496.1|Name=mRNA_H-paniculata_contig7514.15496.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1122bp|location=Sequence derived from alignment at H-paniculata_contig7514:5193..10693- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGGGTCTCACGGGGGGGGTGGGCAGTACAACAGCCAGCACCAGGG
CAATCACCAAATGAAGGGGAAAGGAGGGCGCAAAGAGAAGGGCGGTGGAG
GACGCGGAAGAATGTTTCGGGGTAACGGCCAGATGGATGGGTCTCACGGG
GGGGGTGGGCAGTACAACAGCCAGCACCAGGGCAATCACCAAATGAAGGG
GAAAGGAGGGCGCAAAGAGAAGGGCGGTGGAGGACGCGGAAGAATGTTTC
GGGGTAACGGCCAGGGGATGGGAGGACGTCATGGGCATGCGCACATGGGC
CAAGGTGGCTATATGAATCCCGCAATGGCGATGCAGGCGTCACCAGATGG
ATCACCAATGGGCCAGGGGATGGGAGGACGTCATGGGCATGCGCACATGG
GCCAAGGTGGCTATATGAATCCCGCAATGGCGATGCAGGCGTCACCAGAT
GGATCACCAATGGGCCAGGCGATGATGGCGCGTTACGGGATGCAAGTGCC
ACCCGGCGGGCCTGCGGCCGCCCAGCAAGCGGCCGCCCAGCAACAAGCGG
CGGCGGCATACAATGCTCAGGTGGCGCACCAAAACAGCTACGGGATGATG
CACCTCAATAACGCCATGTCGATGATGAGCATGGGTGCCCCAGGCGGCCA
GCAACAGCAGCCGGGTGGTGGAGGGCGAGCAGATGGCCCGGAGGTAGCAC
CTCAACCGGGTGGACCGGGTCAGCAGGGCGGTCCCTTCGGTGTAATGCCG
GGTGTTGGAGGGGTGGGAGGCGGCGGAACTGGGCCACGATCTTCCGCGAT
GATGGCGCGTTACGGGATGCAAGTGCCACCCGGCGGGCCTGCGGCCGCCC
AGCAAGCGGCCGCCCAGCAACAAGCGGCGGCGGCATACAATGCTCAGGTG
GCGCACCAAAACAGCTACGGGATGATGCACCTCAATAACGCCATGTCGAT
GATGAGCATGGGTGCCCCAGGCGGCCAGCAACAGCAGCCGGGTGGTGGAG
GGCGAGCAGATGGCCCGGAGGTAGCACCTCAACCGGGTGGACCGGGTCAG
CAGGGCGGTCCCTTCGGTGTAATGCCGGGTGTTGGAGGGGTGGGAGGCGG
CGGAACTGGGCCACGATCTTCC
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