mRNA_H-paniculata_contig7504.15483.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7504.15483.1
Unique NamemRNA_H-paniculata_contig7504.15483.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7504.15483.1 vs. uniprot
Match: D7FTN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN7_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 2.440e-17
Identity = 39/55 (70.91%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    4 VIASAPTEAVANFGADSPYWALAMAMEHERLHLETSSVLIRELPLRYVLHPEAWP 168
            VI +AP + V+N GADSPYWAL MAMEHER+H+ETSSVLIRELPL +V  P  WP
Sbjct:  200 VIQAAPEDEVSNIGADSPYWALPMAMEHERIHVETSSVLIRELPLEHVSRPATWP 254
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BLAST of mRNA_H-paniculata_contig7504.15483.1 vs. uniprot
Match: A0A6H5KNH4_9PHAE (FGE-sulfatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH4_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 9.680e-17
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    4 VIASAPTEAVANFGADSPYWALAMAMEHERLHLETSSVLIRELPLRYVLHPEAWP 168
            VI +A    ++N GADSPYWAL MAMEHER+H+ETSSVLIRELPL +V  P  WP
Sbjct:   23 VIHAASEAEISNIGADSPYWALPMAMEHERIHVETSSVLIRELPLEHVSRPATWP 77
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BLAST of mRNA_H-paniculata_contig7504.15483.1 vs. uniprot
Match: A0A3D0MI78_9GAMM (5-histidylcysteine sulfoxide synthase (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D0MI78_9GAMM)

HSP 1 Score: 67.4 bits (163), Expect = 1.610e-11
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:   52 SPYWALAMAMEHERLHLETSSVLIRELPLRYVLHPEAWP 168
            SP W+LAM+ EHER+HLETSSVLIRELPL YV  P++WP
Sbjct:  163 SPAWSLAMSFEHERIHLETSSVLIRELPLEYVTQPDSWP 201
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BLAST of mRNA_H-paniculata_contig7504.15483.1 vs. uniprot
Match: A0A2E8F9M9_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E8F9M9_9GAMM)

HSP 1 Score: 67.0 bits (162), Expect = 2.230e-11
Identity = 30/40 (75.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:   49 DSPYWALAMAMEHERLHLETSSVLIRELPLRYVLHPEAWP 168
            D P WALAM  EHER+HLETSSVLIRELP+ YV  P AWP
Sbjct:  169 DRPSWALAMGFEHERIHLETSSVLIRELPVEYVTKPPAWP 208
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BLAST of mRNA_H-paniculata_contig7504.15483.1 vs. uniprot
Match: A0A2E4LK72_9GAMM (FGE-sulfatase domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E4LK72_9GAMM)

HSP 1 Score: 66.6 bits (161), Expect = 3.050e-11
Identity = 32/46 (69.57%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   49 DSPYWALAMAMEHERLHLETSSVLIRELPLRYVLHPEAWPQAKHFK 186
            D P WAL MA EHER+HLETSSVLIRELP   V+ P+ WP  KHFK
Sbjct:  162 DKPTWALVMAFEHERIHLETSSVLIRELPSELVVQPKHWP--KHFK 205
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BLAST of mRNA_H-paniculata_contig7504.15483.1 vs. uniprot
Match: A0A7S4FAE3_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FAE3_CHRCT)

HSP 1 Score: 62.8 bits (151), Expect = 3.600e-11
Identity = 29/44 (65.91%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:   34 ANFGADSPYWALAMAMEHERLHLETSSVLIRELPLRYVLHPEAW 165
            A  G DSP WAL M  EHER+HLETSSVL+RELPL  +  PE W
Sbjct:   23 ARVGQDSPLWALFMGFEHERIHLETSSVLMRELPLSVLRRPEGW 66
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BLAST of mRNA_H-paniculata_contig7504.15483.1 vs. uniprot
Match: A0A2E3U4H9_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E3U4H9_9GAMM)

HSP 1 Score: 66.2 bits (160), Expect = 4.170e-11
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:   49 DSPYWALAMAMEHERLHLETSSVLIRELPLRYVLHPEAWP 168
            DSP WAL M  EHER+HLETSSVL+RELPL+YV  P+ WP
Sbjct:  176 DSPGWALVMCFEHERIHLETSSVLMRELPLKYVRAPQQWP 215
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BLAST of mRNA_H-paniculata_contig7504.15483.1 vs. uniprot
Match: A0A358XVC2_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A358XVC2_9GAMM)

HSP 1 Score: 65.9 bits (159), Expect = 5.690e-11
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:   52 SPYWALAMAMEHERLHLETSSVLIRELPLRYVLHPEAWP 168
            SP W+LAM  EHER+HLETSSVLIRELPL YV  P+ WP
Sbjct:  163 SPAWSLAMGFEHERIHLETSSVLIRELPLEYVKEPDIWP 201
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BLAST of mRNA_H-paniculata_contig7504.15483.1 vs. uniprot
Match: A0A2E6J9Y8_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E6J9Y8_9GAMM)

HSP 1 Score: 65.9 bits (159), Expect = 5.690e-11
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:   52 SPYWALAMAMEHERLHLETSSVLIRELPLRYVLHPEAWP 168
            SP W+LAM  EHER+HLETSSVLIRELPL YV  P+ WP
Sbjct:  163 SPAWSLAMGFEHERIHLETSSVLIRELPLEYVKEPDIWP 201
[Close]
BLAST of mRNA_H-paniculata_contig7504.15483.1 vs. uniprot
Match: A0A0L0D791_THETB (Generic methyltransferase n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D791_THETB)

HSP 1 Score: 65.5 bits (158), Expect = 7.820e-11
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:    1 EVIASAPT-EAVANFGADSPYWALAMAMEHERLHLETSSVLIRELPLRYVLHPEAWP 168
            E I S+P  +++A  G  SP+WA+ M  EHER+HLETSSVLIRELPL  V  P  WP
Sbjct:  332 ETIVSSPHFDSLAEAGPASPFWAVVMGFEHERIHLETSSVLIRELPLSLVRRPLTWP 388
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7504.15483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTN7_ECTSI2.440e-1770.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNH4_9PHAE9.680e-1767.27FGE-sulfatase domain-containing protein n=1 Tax=Ec... [more]
A0A3D0MI78_9GAMM1.610e-1174.365-histidylcysteine sulfoxide synthase (Fragment) n... [more]
A0A2E8F9M9_9GAMM2.230e-1175.00Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A2E4LK72_9GAMM3.050e-1169.57FGE-sulfatase domain-containing protein n=1 Tax=Ga... [more]
A0A7S4FAE3_CHRCT3.600e-1165.91Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
A0A2E3U4H9_9GAMM4.170e-1172.50Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A358XVC2_9GAMM5.690e-1174.36Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A2E6J9Y8_9GAMM5.690e-1174.36Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A0L0D791_THETB7.820e-1157.89Generic methyltransferase n=1 Tax=Thecamonas trahe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7504contigH-paniculata_contig7504:9043..9500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue1.3e-14
Seed eggNOG ortholog2880.D7FTN7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.dimethylhistidine N-methyltransferase activity
EggNOG OGs2QS9T@2759,COG4301@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size205
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930921.0191686-CDS-H-paniculata_contig7504:9042..91551622930921.0191686-CDS-H-paniculata_contig7504:9042..9155Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7504 9043..9155 +
1691481511.2492101-CDS-H-paniculata_contig7504:9042..91551691481511.2492101-CDS-H-paniculata_contig7504:9042..9155Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7504 9043..9155 +
1622930921.0440292-CDS-H-paniculata_contig7504:9410..94981622930921.0440292-CDS-H-paniculata_contig7504:9410..9498Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7504 9411..9498 +
1691481511.2674294-CDS-H-paniculata_contig7504:9410..94981691481511.2674294-CDS-H-paniculata_contig7504:9410..9498Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7504 9411..9498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7504.15483.1prot_H-paniculata_contig7504.15483.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7504 9043..9498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7504.15483.1

>prot_H-paniculata_contig7504.15483.1 ID=prot_H-paniculata_contig7504.15483.1|Name=mRNA_H-paniculata_contig7504.15483.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
EVIASAPTEAVANFGADSPYWALAMAMEHERLHLETSSVLIRELPLRYVL
HPEAWPQAKHFKSKRSR
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mRNA from alignment at H-paniculata_contig7504:9043..9500+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7504.15483.1 ID=mRNA_H-paniculata_contig7504.15483.1|Name=mRNA_H-paniculata_contig7504.15483.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=458bp|location=Sequence derived from alignment at H-paniculata_contig7504:9043..9500+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGTCATCGCGTCCGCACCTACAGAAGCCGTTGCAAATTTTGGTGCAGA
CAGCCCCTACTGGGCTCTCGCAATGGCGATGGAACATGAGCGCTTGCACT
TGGAAACCTCCAGGTGTGGTTTGAGCTGCTTAGCGAGCAGAGTTGTAGAA
AGCCGTCACGACGACCTCGTTCTCGCTGTTACGTGCTCACCCGGCGGTAT
TGCTCCTCGGTTTCCTGCGGCGCGTGTACTTTGAGATACTTCTTTGTTCA
AATTGCCGTTGAATCACCGTGCAGGCGTATCTCCCTCGTTCGTAACACTA
TCGTAACGAAGCGCATATTTTCGTTGTTGAACGACCTCTGAATCGCCCTG
CTTTCAATCTCTTCCCAGCGTTCTCATTCGTGAGTTACCCTTGAGGTATG
TTCTCCATCCCGAGGCGTGGCCACAAGCCAAGCACTTCAAGTCCAAACGG
TCCCGCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig7504:9043..9500+

>mRNA_H-paniculata_contig7504.15483.1 ID=mRNA_H-paniculata_contig7504.15483.1|Name=mRNA_H-paniculata_contig7504.15483.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig7504:9043..9500+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGTCATCGCGTCCGCACCTACAGAAGCCGTTGCAAATTTTGGTGCAGA
CAGCCCCTACTGGGCTCTCGCAATGGCGATGGAACATGAGCGCTTGCACT
TGGAAACCTCCAGGAGGTCATCGCGTCCGCACCTACAGAAGCCGTTGCAA
ATTTTGGTGCAGACAGCCCCTACTGGGCTCTCGCAATGGCGATGGAACAT
GAGCGCTTGCACTTGGAAACCTCCAGCGTTCTCATTCGTGAGTTACCCTT
GAGGTATGTTCTCCATCCCGAGGCGTGGCCACAAGCCAAGCACTTCAAGT
CCAAACGGTCCCGCCGTTCTCATTCGTGAGTTACCCTTGAGGTATGTTCT
CCATCCCGAGGCGTGGCCACAAGCCAAGCACTTCAAGTCCAAACGGTCCC
GC
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