mRNA_H-paniculata_contig7504.15482.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7504.15482.1
Unique NamemRNA_H-paniculata_contig7504.15482.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig7504.15482.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 4.360e-25
Identity = 60/117 (51.28%), Postives = 83/117 (70.94%), Query Frame = 1 
Query:   22 MAFARALVTRCTKSSQAADRLAECCVILRITRLNVVQDVETRWWSTQALIERAVYLMKSVELHEKMDKIAPLLLSVNWCLLKLLLSVLDPVMYVQKKLESNK-VAGSLVVPFISDLR 369
            +A ARA+V R  +SSQ + RLA    IL+++ L+V+QDVETRWWS+ A+IER +YLMK+++LHE  D IAP+L   +W +L+L+  +L P M  QK LE  K V GS+ VP I +LR
Sbjct:  193 LAKARAVVGRYKRSSQMSGRLAVFIGILKLSPLSVLQDVETRWWSSWAMIERLLYLMKAIKLHESTDNIAPVLSETDWEVLRLIEPILRPFMQAQKDLEGAKYVTGSMTVPKIGELR 309
[Close]
BLAST of mRNA_H-paniculata_contig7504.15482.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 4.220e-24
Identity = 57/120 (47.50%), Postives = 82/120 (68.33%), Query Frame = 1 
Query:   22 MAFARALVTRCTKSSQAADRLAECCVILRITRLNVVQDVETRWWSTQALIERAVYLMKSVELHEKMDKIAPLLLSVNWCLLKLLLSVLDPVMYVQKKLESNK-VAGSLVVPFISDLRARL 378
            +  AR LV R  KSSQ A RL + C IL++  L+V+QDVETRWWST A++ R +YLMK+++LHE MD++ PLL   +W +L+L+  +L P M  QK LE  + V GS+ +  +++LR  L
Sbjct:  157 LGLARTLVGRYKKSSQMAARLVQLCGILQMEPLSVMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYVTGSMTIGKMAELREGL 276
[Close]
BLAST of mRNA_H-paniculata_contig7504.15482.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.750e-23
Identity = 60/121 (49.59%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:   10 VKKCMAFARALVTRCTKSSQAADRLAECCVILRITRLNVVQDVETRWWSTQALIERAVYLMKSVELHEKMDKIAPLLLSVNWCLLKLLLSVLDPVMYVQKKLESNK-VAGSLVVPFISDLR 369
            V K +A AR +VTR T SSQA+DRL + C I+++ R NVVQDVETRWWST   I R + L + +  HE +D   PLL   +W +L+L+ S+L P M  QK LE++K V   LV P+I+DL+
Sbjct:  118 VSKALALARGVVTRYTISSQASDRLEQVCDIVQVERKNVVQDVETRWWSTYVSICRLISLRRPITEHEIIDSTPPLLKEKDWEVLQLVESLLKPFMTAQKHLEASKEVTVRLVSPYIADLQ 238
[Close]
BLAST of mRNA_H-paniculata_contig7504.15482.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 4.820e-21
Identity = 57/124 (45.97%), Postives = 81/124 (65.32%), Query Frame = 1 
Query:   10 VKKCMAFARALVTRCTKSSQAADRLAECCVILRITRLNVVQDVETRWWSTQALIERAVYLMKSVELHEKMDKIAPLLLSVNWCLLKLLLSVLDPVMYVQKKLESNK-VAGSLVVPFISDLRARL 378
            V K +A AR +VTR   SSQA+DRL +   I+++ R  VVQDVETRWWST A I R + L + +  HE++D I PLL   +W +L+++  +  P +  QK  E++K V  SLV+P+I+DLR  L
Sbjct:  162 VSKALALARRVVTRYNMSSQASDRLEQMRDIVQVERKKVVQDVETRWWSTYASICRLLSLRRPITEHERIDSIPPLLKEKDWEVLQVVEPLSKPFILSQKHREASKDVTVSLVIPYIADLRDEL 285
[Close]
BLAST of mRNA_H-paniculata_contig7504.15482.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.140e-16
Identity = 54/124 (43.55%), Postives = 73/124 (58.87%), Query Frame = 1 
Query:   10 VKKCMAFARALVTRCTKSSQAADRLAECCVILRITRLNVVQDVETRWWSTQALIERAVYLMKSVELHEKMDKIAPLLLSVNWCLLKLLLSVLDPVMYVQKKLESNK-VAGSLVVPFISDLRARL 378
            V K +A  R +VTR T SSQA++RL + C I+++ R  VVQDVETRWWST                  ++D I PLL   +W +L+L+  +L P M  QK LE++K V  SLV  +I+DLR  L
Sbjct:  106 VSKALALPRGVVTRYTMSSQASNRLEQMCDIVQVERKKVVQDVETRWWSTP----------------REIDSIPPLLNEKDWEVLQLVEPLLHPFMTAQKHLEASKGVTVSLVTAYIADLRDEL 213
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7504.15482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KUY5_9PHAE4.360e-2551.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCS5_ECTSI4.220e-2447.50Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5JHP9_9PHAE1.750e-2349.59Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A6H5JJV8_9PHAE4.820e-2145.97Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KVI1_9PHAE1.140e-1643.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7504contigH-paniculata_contig7504:5233..5610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue1.4e-20
Seed eggNOG ortholog2880.D7G5Z0
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size378
Cds size378
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930920.9762294-CDS-H-paniculata_contig7504:5232..56101622930920.9762294-CDS-H-paniculata_contig7504:5232..5610Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7504 5233..5610 +
1691481511.23715-CDS-H-paniculata_contig7504:5232..56101691481511.23715-CDS-H-paniculata_contig7504:5232..5610Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7504 5233..5610 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7504.15482.1prot_H-paniculata_contig7504.15482.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7504 5233..5610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7504.15482.1

>prot_H-paniculata_contig7504.15482.1 ID=prot_H-paniculata_contig7504.15482.1|Name=mRNA_H-paniculata_contig7504.15482.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
MKWVKKCMAFARALVTRCTKSSQAADRLAECCVILRITRLNVVQDVETRW
WSTQALIERAVYLMKSVELHEKMDKIAPLLLSVNWCLLKLLLSVLDPVMY
VQKKLESNKVAGSLVVPFISDLRARL
back to top

mRNA from alignment at H-paniculata_contig7504:5233..5610+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7504.15482.1 ID=mRNA_H-paniculata_contig7504.15482.1|Name=mRNA_H-paniculata_contig7504.15482.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=378bp|location=Sequence derived from alignment at H-paniculata_contig7504:5233..5610+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGTGGGTCAAGAAGTGCATGGCTTTCGCCCGCGCCTTGGTGACTCG
CTGCACCAAGTCTTCCCAGGCGGCCGACCGGCTTGCCGAGTGCTGTGTGA
TACTCCGCATCACCCGTTTGAATGTGGTCCAGGACGTGGAAACACGGTGG
TGGTCGACGCAGGCGCTCATAGAGCGCGCGGTGTATCTCATGAAGTCGGT
TGAGCTGCACGAGAAGATGGACAAGATCGCTCCCCTGCTGTTGTCAGTGA
ACTGGTGCCTCTTGAAACTTCTGCTGTCCGTGCTGGATCCGGTTATGTAC
GTCCAGAAGAAGCTTGAGTCCAACAAGGTGGCAGGATCCTTGGTCGTGCC
GTTCATCTCGGACCTCCGCGCTCGCTTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig7504:5233..5610+

>mRNA_H-paniculata_contig7504.15482.1 ID=mRNA_H-paniculata_contig7504.15482.1|Name=mRNA_H-paniculata_contig7504.15482.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig7504:5233..5610+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGTGGGTCAAGAAGTGCATGGCTTTCGCCCGCGCCTTGGTGACTCG
CTGCACCAAGTCTTCCCAGGCGGCCGACCGGCTTGCCGAGTGCTGTGTGA
TACTCCGCATCACCCGTTTGAATGTGGTCCAGGACGTGGAAACACGGTGG
TGGTCGACGCAGGCGCTCATAGAGCGCGCGGTGTATCTCATGAAGTCGGT
TGAGCTGCACGAGAAGATGGACAAGATCGCTCCCCTGCTGTTGTCAGTGA
ACTGGTGCCTCTTGAAACTTCTGCTGTCCGTGCTGGATCCGGTTATGTAC
GTCCAGAAGAAGCTTGAGTCCAACAAGGTGGCAGGATCCTTGGTCGTGCC
GTTCATCTCGGACCTCCGCGCTCGCTTGATGAAGTGGGTCAAGAAGTGCA
TGGCTTTCGCCCGCGCCTTGGTGACTCGCTGCACCAAGTCTTCCCAGGCG
GCCGACCGGCTTGCCGAGTGCTGTGTGATACTCCGCATCACCCGTTTGAA
TGTGGTCCAGGACGTGGAAACACGGTGGTGGTCGACGCAGGCGCTCATAG
AGCGCGCGGTGTATCTCATGAAGTCGGTTGAGCTGCACGAGAAGATGGAC
AAGATCGCTCCCCTGCTGTTGTCAGTGAACTGGTGCCTCTTGAAACTTCT
GCTGTCCGTGCTGGATCCGGTTATGTACGTCCAGAAGAAGCTTGAGTCCA
ACAAGGTGGCAGGATCCTTGGTCGTGCCGTTCATCTCGGACCTCCGCGCT
CGCTTG
back to top