mRNA_H-paniculata_contig7503.15481.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7503.15481.1
Unique NamemRNA_H-paniculata_contig7503.15481.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig7503.15481.1 vs. uniprot
Match: D7FS20_ECTSI (Subtilisin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS20_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 1.640e-37
Identity = 68/93 (73.12%), Postives = 78/93 (83.87%), Query Frame = 1
Query:    4 GTSMSTPVVAGAASMARQYFREGWYNTGAKNISLGFDPSAALIKAALVNSAVAMDFAGVNPATSSIDISLDLPPDTHQGHGRVQMTNALNINS 282
            GTSMSTP+VAG  +MARQYFREGWYNTG+KN SLGFDPS AL+KA L+NSA  M FAGVNP + ++D++L  PPDTHQG GRV M NALNINS
Sbjct:  693 GTSMSTPIVAGNGAMARQYFREGWYNTGSKNESLGFDPSGALLKAVLINSATGMSFAGVNPDSGTLDVTLTTPPDTHQGFGRVTMINALNINS 785          
BLAST of mRNA_H-paniculata_contig7503.15481.1 vs. uniprot
Match: A0A534MS53_9EURY (Peptidase_S8 domain-containing protein (Fragment) n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A534MS53_9EURY)

HSP 1 Score: 78.2 bits (191), Expect = 1.730e-16
Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 1
Query:    4 GTSMSTPVVAGAASMARQYFREGWYNTGAKNISLGFDPSAALIKAALVNSAVAMDFAGVNPATSSIDISLDLPPDTHQGHGRVQMTNAL 270
            GTSM+TP VAG+A + RQY+ +GWY TG+K  + GF PSAALIKA ++NSA  M  AG      +        P+ +QG+GRV + +AL
Sbjct:   15 GTSMATPTVAGSAGLVRQYYMDGWYPTGSKTPANGFTPSAALIKATIINSAREMTGAGAYANGEN------KYPNDNQGYGRVALDDAL 97          
BLAST of mRNA_H-paniculata_contig7503.15481.1 vs. uniprot
Match: C1EE69_MICCC (ATP-binding cassette superfamily n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EE69_MICCC)

HSP 1 Score: 82.8 bits (203), Expect = 1.840e-16
Identity = 45/89 (50.56%), Postives = 58/89 (65.17%), Query Frame = 1
Query:    4 GTSMSTPVVAGAASMARQYFREGWYNTGAKNISLGFDPSAALIKAALVNSAVAMDFAGVNPATSSIDISLDLPPDTHQGHGRVQMTNAL 270
            GTSM+TPV AGAA++ RQYF +G+Y TGA+    GF PSAALIKAAL+N A  M         + + + L+ PP   QGHGRV +  +L
Sbjct:  443 GTSMATPVAAGAAALIRQYFTDGFYPTGARTKGNGFAPSAALIKAALINGAEPMR------GFTELGLPLEPPPSVRQGHGRVHVGRSL 525          
BLAST of mRNA_H-paniculata_contig7503.15481.1 vs. uniprot
Match: A0A059LB27_9CHLO (Peptidase_S8 domain-containing protein (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LB27_9CHLO)

HSP 1 Score: 77.4 bits (189), Expect = 5.980e-16
Identity = 41/89 (46.07%), Postives = 60/89 (67.42%), Query Frame = 1
Query:    4 GTSMSTPVVAGAASMARQYFREGWYNTGAKNISLGFDPSAALIKAALVNSAVAMDFAGVNPATSSIDISLDLPPDTHQGHGRVQMTNAL 270
            GTSM+TP+VAGAA++ RQY+ EG+Y +G +N S G+ PS+ALIKA L+  A ++   G+  A     + +D PP   QG GRV + ++L
Sbjct:   36 GTSMATPLVAGAAALVRQYYMEGYYPSGERNASAGWVPSSALIKATLIGGAASLS--GLEAANG---LPIDPPPSFRQGWGRVDLASSL 119          
BLAST of mRNA_H-paniculata_contig7503.15481.1 vs. uniprot
Match: A0A5J4Y762_9CHLO (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y762_9CHLO)

HSP 1 Score: 80.9 bits (198), Expect = 9.030e-16
Identity = 43/90 (47.78%), Postives = 57/90 (63.33%), Query Frame = 1
Query:    1 QGTSMSTPVVAGAASMARQYFREGWYNTGAKNISLGFDPSAALIKAALVNSAVAMDFAGVNPATSSIDISLDLPPDTHQGHGRVQMTNAL 270
            +GTSMSTPVVAGA ++ RQYF EGWY TGA   +  + PS  L+KA ++  AVAM     +   +   + LD PP T QG GR+Q+  +L
Sbjct:  638 RGTSMSTPVVAGAVALVRQYFVEGWYPTGAAVAADAYTPSGPLLKAVMLGGAVAMTGLTPDEDPTKNGVPLDPPPSTRQGFGRMQLGASL 727          
BLAST of mRNA_H-paniculata_contig7503.15481.1 vs. uniprot
Match: D7FS58_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS58_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 4.240e-15
Identity = 45/91 (49.45%), Postives = 59/91 (64.84%), Query Frame = 1
Query:    4 GTSMSTPVVAGAASMARQYFREGWYNTGAKNISLGFDPSAALIKAALVNSAVAMDFAGVNPATSSIDISLDLPPDTHQGHGRVQMTNALNI 276
            GTSM+TPVVAGAA+M RQYF +GWY +G    S  F+PS AL+KA +V S  AM     +  +S+   +L  PPD  QG GRV + + LN+
Sbjct:  508 GTSMATPVVAGAAAMIRQYFVQGWYPSGIATPSNIFNPSNALVKAMIVTSGTAM----ASYDSSAGSTTLGSPPDAIQGFGRVLLDSVLNV 594          
BLAST of mRNA_H-paniculata_contig7503.15481.1 vs. uniprot
Match: A0A534MKK6_9EURY (Peptidase_S8 domain-containing protein (Fragment) n=2 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A534MKK6_9EURY)

HSP 1 Score: 78.2 bits (191), Expect = 7.950e-15
Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 1
Query:    4 GTSMSTPVVAGAASMARQYFREGWYNTGAKNISLGFDPSAALIKAALVNSAVAMDFAGVNPATSSIDISLDLPPDTHQGHGRVQMTNAL 270
            GTSM+TP VAG+A + RQY+ +GWY TG+K+   GF PSAALIKA ++NSA  M+ AG      +        P+ +QG GRV + +AL
Sbjct:  575 GTSMATPTVAGSAGLVRQYYMDGWYPTGSKSAGDGFTPSAALIKATIINSAREMNGAGAYANGEN------KYPNDNQGFGRVTLDDAL 657          
BLAST of mRNA_H-paniculata_contig7503.15481.1 vs. uniprot
Match: A0A534M4N4_9EURY (Uncharacterized protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A534M4N4_9EURY)

HSP 1 Score: 77.8 bits (190), Expect = 1.100e-14
Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 1
Query:    4 GTSMSTPVVAGAASMARQYFREGWYNTGAKNISLGFDPSAALIKAALVNSAVAMDFAGVNPATSSIDISLDLPPDTHQGHGRVQMTNAL 270
            GTSM+TP VAG+A + RQY+ +GWY TG+K+ + GF PSAALIKA ++NSA  M  AG      +        P+ +QG GRV + +AL
Sbjct:  575 GTSMATPTVAGSAGLVRQYYMDGWYPTGSKSATDGFTPSAALIKATIINSAREMTGAGAYANGEN------KYPNDNQGFGRVTLDDAL 657          
BLAST of mRNA_H-paniculata_contig7503.15481.1 vs. uniprot
Match: A0A662EBV2_9BACT (Peptidase_S8 domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A662EBV2_9BACT)

HSP 1 Score: 77.4 bits (189), Expect = 1.440e-14
Identity = 43/89 (48.31%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    4 GTSMSTPVVAGAASMARQYFREGWYNTGAKNISLGFDPSAALIKAALVNSAVAMDFAGVNPATSSIDISLDLPPDTHQGHGRVQMTNAL 270
            GTSM+TP VAG A++ RQYF EGW+  G +++  GF+PSAAL+KA LV SAV +   G +        S+D  P   QG G VQ+  AL
Sbjct:  452 GTSMATPTVAGLAALVRQYFMEGWFVFGRRDVERGFEPSAALVKAVLVASAVDLTTLGCS--------SIDSIPSRDQGWGLVQLDRAL 532          
BLAST of mRNA_H-paniculata_contig7503.15481.1 vs. uniprot
Match: A0A7S0X079_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0X079_9CHLO)

HSP 1 Score: 75.9 bits (185), Expect = 3.550e-14
Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = 1
Query:    1 QGTSMSTPVVAGAASMARQYFREGWYNTGAKNISLGFDPSAALIKAALVNSAVAMDFAGVNPATSSIDISLDLPPDTHQGHGRVQMTNAL 270
            +GTSM+TPVVAGAA++ARQYF EG+Y +G +    GF+PSA+L++AALV  A AM   G +         L  PP   QG GR+ ++ +L
Sbjct:   33 EGTSMATPVVAGAAALARQYFMEGFYPSGERTEGAGFEPSASLLRAALVAGAAAMR--GYSHTNGQ---PLQPPPSQFQGWGRLDLSRSL 117          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7503.15481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS20_ECTSI1.640e-3773.12Subtilisin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7F... [more]
A0A534MS53_9EURY1.730e-1648.31Peptidase_S8 domain-containing protein (Fragment) ... [more]
C1EE69_MICCC1.840e-1650.56ATP-binding cassette superfamily n=1 Tax=Micromona... [more]
A0A059LB27_9CHLO5.980e-1646.07Peptidase_S8 domain-containing protein (Fragment) ... [more]
A0A5J4Y762_9CHLO9.030e-1647.78Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2... [more]
D7FS58_ECTSI4.240e-1549.45Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A534MKK6_9EURY7.950e-1548.31Peptidase_S8 domain-containing protein (Fragment) ... [more]
A0A534M4N4_9EURY1.100e-1448.31Uncharacterized protein n=1 Tax=Euryarchaeota arch... [more]
A0A662EBV2_9BACT1.440e-1448.31Peptidase_S8 domain-containing protein n=1 Tax=Aci... [more]
A0A7S0X079_9CHLO3.550e-1447.78Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7503contigH-paniculata_contig7503:10363..11149 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score77.8
Seed ortholog evalue2.9e-12
Seed eggNOG ortholog296587.XP_002504922.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Subtilase family
EggNOG OGs2QSWT@2759,34J3V@3041,383XF@33090,COG1404@1
COG Functional cat.O
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size282
Cds size270
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7503.15481.1prot_H-paniculata_contig7503.15481.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7503 10363..11137 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930920.8976357-CDS-H-paniculata_contig7503:10362..104071622930920.8976357-CDS-H-paniculata_contig7503:10362..10407Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7503 10363..10407 -
1691481511.1984072-CDS-H-paniculata_contig7503:10362..104071691481511.1984072-CDS-H-paniculata_contig7503:10362..10407Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7503 10363..10407 -
1622930920.9110494-CDS-H-paniculata_contig7503:10912..111371622930920.9110494-CDS-H-paniculata_contig7503:10912..11137Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7503 10913..11137 -
1691481511.2119403-CDS-H-paniculata_contig7503:10912..111371691481511.2119403-CDS-H-paniculata_contig7503:10912..11137Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7503 10913..11137 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930920.930953-UTR-H-paniculata_contig7503:11137..111491622930920.930953-UTR-H-paniculata_contig7503:11137..11149Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7503 11138..11149 -
1691481511.2283773-UTR-H-paniculata_contig7503:11137..111491691481511.2283773-UTR-H-paniculata_contig7503:11137..11149Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7503 11138..11149 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7503.15481.1

>prot_H-paniculata_contig7503.15481.1 ID=prot_H-paniculata_contig7503.15481.1|Name=mRNA_H-paniculata_contig7503.15481.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
MSTPVVAGAASMARQYFREGWYNTGAKNISLGFDPSAALIKAALVNSAVA
MDFAGVNPATSSIDISLDLPPDTHQGHGRVQMTNALNINS
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mRNA from alignment at H-paniculata_contig7503:10363..11149-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7503.15481.1 ID=mRNA_H-paniculata_contig7503.15481.1|Name=mRNA_H-paniculata_contig7503.15481.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=787bp|location=Sequence derived from alignment at H-paniculata_contig7503:10363..11149- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGCACGAGTATGTCGACCCCCGTGGTGGCGGGCGCCGCATCCATGGC TCGGCAATATTTCAGAGAAGGGTGGTACAATACGGGCGCTAAGAATATCT CGCTCGGGTTCGACCCTTCCGCGGCGCTGATCAAGGCCGCCCTCGTGAAT TCCGCCGTCGCCATGGACTTCGCCGGGGTGAACCCTGCGACGAGTTCGAT CGATATTTCGCTTGACCTTCCTCCGGACACGCATCAGGTACTATATATGT ATATATATATATATATATATATATAGCGTGTGCATTGTGTGTCGAGTGTG GGTGTGGGTGTATGTGTGCAGTAAGTTAGTTAGCGTGTAGGTATGCTCTG GCAGCTGTGGATAGGTTTTGTAGTATTCATGGAACTTGAATACAAAATAC ATGAACGGTCCGTAACCCACTCAAATTTGTCCAATGCGATATCTCACGAA CGAAAGTGAGTTGTAAAGTGGAGGAATCACGGTCGTGATCGCCTGGCCGC TTTGCAAATCAGCTCAAAATTGGAGACAAATCGACTCAAGTTATCAATTC CCTACCTTAGCCGGACTCTCCACCTACACCCTTCATCCGTTTCCTGCCAG TCGTTCCACCATTATTGGCTCTCCATTCGTATTTACCACCGTGTCTGCCC CTTTGGTGTTTTGCTTTTACATTATTTCATCGATGCCACCCCCCTCCACC CCCCCCCTCCACCCGCGCGCCCACGTATTTTATTCAACACAGGGACACGG CAGAGTGCAGATGACCAACGCGCTCAATATCAACTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig7503:10363..11149-

>mRNA_H-paniculata_contig7503.15481.1 ID=mRNA_H-paniculata_contig7503.15481.1|Name=mRNA_H-paniculata_contig7503.15481.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig7503:10363..11149- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGACCCCCGTGGTGGCGGGCGCCGCATCCATGGCTCGGCAATATTT
CAGAGAAGGGTGGTACAATACGGGCGCTAAGAATATCTCGCTCGGGTTCG
ACCCTTCCGCGGCGCTGATCAAGGCCGCCCTCGTGAATTCCGCCGTCGCC
ATGGACTTCGCCGGGGTGAACCCTGCGACGAGTTCGATCGATATTTCGCT
TGACCTTCCTCCGGACACGCATCAGATGTCGACCCCCGTGGTGGCGGGCG
CCGCATCCATGGCTCGGCAATATTTCAGAGAAGGGTGGTACAATACGGGC
GCTAAGAATATCTCGCTCGGGTTCGACCCTTCCGCGGCGCTGATCAAGGC
CGCCCTCGTGAATTCCGCCGTCGCCATGGACTTCGCCGGGGTGAACCCTG
CGACGAGTTCGATCGATATTTCGCTTGACCTTCCTCCGGACACGCATCAG
GGACACGGCAGAGTGCAGATGACCAACGCGCTCAATATCAACTCGGGACA
CGGCAGAGTGCAGATGACCAACGCGCTCAATATCAACTCG
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