mRNA_H-paniculata_contig750.15479.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig750.15479.1
Unique NamemRNA_H-paniculata_contig750.15479.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig750.15479.1 vs. uniprot
Match: D7FR43_ECTSI (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR43_ECTSI)

HSP 1 Score: 244 bits (622), Expect = 5.090e-72
Identity = 117/185 (63.24%), Postives = 146/185 (78.92%), Query Frame = 1 
Query:  109 GAVCDPVSGVCKMPPR-----AGGA-MIP------GLSVSLEDESGTSVDPQQIFKGKMVGIYFSAGWCPPCKAFSPVLSKWAKKHSDDVVIVFCSFDKSEPQMKEYINGKGFLRIPFSPDSGRMKAAESYGVQSLPTLVIVNGDTGATVTTWGRSAVSKNPSGCLKEWKDGKDGVSWLQLMKPW 627
            GAVCDP  GVC+MP R     AG A +IP       LSV LEDE+G  + P  +FKGKM+G+Y SAGWCPPC+AFSP+LSKWAK+H ++  +VF S DKSE  M++YI GKGF+R+PF P+S R +AAES+GVQ+LPTLV+VNGDTGA VT+WGRSA++KNP+GCLK WK+G  GVSWLQL++PW
Sbjct:    8 GAVCDP-QGVCRMPARGDTGSAGEASLIPLPKALRPLSV-LEDEAGHKLSPAAVFKGKMIGVYVSAGWCPPCRAFSPLLSKWAKEHKNEFEVVFVSLDKSEQAMRDYITGKGFVRLPFEPESDRHRAAESFGVQALPTLVVVNGDTGAVVTSWGRSAITKNPNGCLKAWKEGNHGVSWLQLLRPW 190
[Close]
BLAST of mRNA_H-paniculata_contig750.15479.1 vs. uniprot
Match: A0A1Y1YRL7_9FUNG (Thioredoxin-like protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YRL7_9FUNG)

HSP 1 Score: 150 bits (378), Expect = 3.140e-38
Identity = 67/145 (46.21%), Postives = 97/145 (66.90%), Query Frame = 1 
Query:  193 LEDESGTSVDPQQIFKGKMVGIYFSAGWCPPCKAFSPVLSKWAKKHSDDVVIVFCSFDKSEPQMKEYINGKGFLRIPFSPDSGRMKAAESYGVQSLPTLVIVNGDTGATVTTWGRSAVSKNPSGCLKEWKDGKDGVSWLQLMKPW 627
            L D     V P+ + +GK+VG+YFSA WCPPCKAFSPVL+++A+ + ++ V+V  + DK++  M ++I GK +L +PF  +  +        V ++P+L+IVN  T   VTTWGRSA+SKN   CL+EWK+GK G SW  L+K W
Sbjct:   20 LVDGEQKEVSPK-VLQGKLVGLYFSASWCPPCKAFSPVLTQFAEDNKEEFVVVHVNLDKTKEDMMDFIQGKNWLSVPFEDEKVKKALGTQLKVYTIPSLIIVNTTTKQIVTTWGRSAISKNRDHCLQEWKEGKHGCSWYHLLKFW 163
[Close]
BLAST of mRNA_H-paniculata_contig750.15479.1 vs. uniprot
Match: A0A4P9XQ06_9FUNG (Thioredoxin-like-domain-containing protein n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XQ06_9FUNG)

HSP 1 Score: 149 bits (376), Expect = 2.850e-37
Identity = 63/128 (49.22%), Postives = 90/128 (70.31%), Query Frame = 1 
Query:  247 MVGIYFSAGWCPPCKAFSPVLSKWAKKHSDDVVIVFCSFDKSEPQMKEYINGK-GFLRIPFSPDSGRMKAAESYGVQSLPTLVIVNGDTGATVTTWGRSAVSKNPSGCLKEWKDGKDGVSWLQLMKPW 627
            ++G+YF+A WCPPC+ FSPVL ++ ++H+DD+ I+  S D+ E    EY++ K G++ +PF     R   A  + VQ +PTL IV+ DTG  V+TWGRSA+ KNP GCL+EW+ G  GVSW QL++PW
Sbjct:   89 LLGVYFTASWCPPCQQFSPVLLRFTQQHADDLQIILVSHDRDEDAAAEYLSNKLGWMTLPFDDVDRRRTLARLFEVQMIPTLAIVDADTGKIVSTWGRSAIMKNPDGCLEEWRQGGTGVSWWQLIRPW 216
[Close]
BLAST of mRNA_H-paniculata_contig750.15479.1 vs. uniprot
Match: A0A7S2TKD0_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TKD0_9EUKA)

HSP 1 Score: 148 bits (374), Expect = 4.340e-37
Identity = 72/156 (46.15%), Postives = 102/156 (65.38%), Query Frame = 1 
Query:  163 GAMIPGL----SVSLEDESGTSVDPQQIFKGKMVGIYFSAGWCPPCKAFSPVLSKWAKKHSDDVVIVFCSFDKSEPQMKEYINGKGFLRIPFSPDSGRMKAAESYGVQSLPTLVIVNGDTGATVTTWGRSAVSKNPSGCLKEWKDGKDGVSWLQLM 618
            G ++PGL    + SL DE G +V   ++   K+VG+YFSAGWC PC+AFSPVL K+ +++ DD  +VF S D+SE  M EYI GKGFL++ +   S R +      V S+P+LVIV+G+ G  +TT GR A++ NP GC+  WK G+ G+SW   +
Sbjct:   44 GNILPGLLSHLTTSLRDEYGNAVGGDEL-SNKIVGLYFSAGWCGPCRAFSPVLKKFHEEYMDDFRVVFVSMDRSERDMVEYIKGKGFLQVDYKSKS-RTELITKCSVSSIPSLVIVDGNDGKVITTSGRMAITANPEGCVGSWKQGQSGISWCDCI 197
[Close]
BLAST of mRNA_H-paniculata_contig750.15479.1 vs. uniprot
Match: A0A4P9Z3L3_9FUNG (Thioredoxin-like protein n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9Z3L3_9FUNG)

HSP 1 Score: 139 bits (350), Expect = 1.920e-34
Identity = 62/128 (48.44%), Postives = 84/128 (65.62%), Query Frame = 1 
Query:  247 MVGIYFSAGWCPPCKAFSPVLSKWAKKHSDDVVIVFCSFDKSEPQMKEYINGK-GFLRIPFSPDSGRMKAAESYGVQSLPTLVIVNGDTGATVTTWGRSAVSKNPSGCLKEWKDGKDGVSWLQLMKPW 627
            +VG+YF+A WCPPC+AFSP L  +A+ H+    +V  S D       EYI GK G+L +P++  + R    +  GV  +P L I+NG TGA V+TWGRSA+ KNP  CL+EW+ G  GVSW QL++PW
Sbjct:   36 LVGVYFTASWCPPCQAFSPTLRAFAQTHAAAFQVVLVSLDTDPDAAAEYIVGKTGWLAVPWADRARRQSLTKQLGVSMIPQLTILNGGTGAVVSTWGRSAILKNPQHCLEEWQAGGSGVSWWQLLRPW 163
[Close]
BLAST of mRNA_H-paniculata_contig750.15479.1 vs. uniprot
Match: R1DWI2_EMIHU (Thioredoxin domain-containing protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DWI2_EMIHU)

HSP 1 Score: 130 bits (327), Expect = 8.180e-32
Identity = 63/114 (55.26%), Postives = 77/114 (67.54%), Query Frame = 1 
Query:  241 GKMVGIYFSAGWCPPCKAFSPVLSKWAKKHSDDVVIVFCSFDKSEPQMKEYINGKGFLRIPFSPDSGRMKAAESYGVQSLPTLVIVNGDTGATVTTWGRSAVSKNPSGCLKEWK 582
            GK+VG+YFSA WCPPC  FSP LSK    HS D  +VF S D+SE +MK +I  KGFL IPF   + R    E  GV  LPTLVIV+  +G  +T WGR+AV++NP GC+K WK
Sbjct:   15 GKIVGLYFSASWCPPCCKFSPELSKLRAAHSADFAVVFVSCDRSEAEMKSFI-AKGFLHIPFH-SAARRAIQEKLGVSMLPTLVIVDATSGKVLTDWGRAAVTRNPKGCVKSWK 126
[Close]
BLAST of mRNA_H-paniculata_contig750.15479.1 vs. uniprot
Match: A0A139AF37_GONPJ (Thioredoxin-like protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AF37_GONPJ)

HSP 1 Score: 121 bits (304), Expect = 3.520e-27
Identity = 55/135 (40.74%), Postives = 87/135 (64.44%), Query Frame = 1 
Query:  193 LEDESGTSVDPQQI--FKGKMVGIYFSAGWCPPCKAFSPVLSKWAKKHSDDVVIVFCSFDKSEPQMKEYINGKGFLRIPFSPDSGRMKAAESYGVQSLPTLVIVNGDTGATVTTWGRSAVSKNPSGCLKEWKDGK 591
            L D+ G  +D QQI   + K+VG+YFSA WCPPC+AFSPVLS++ K H ++  +V+ S D ++ QM + + GKG+  +PF     R   + ++ +  +PTLV+V+G TG   +  GR+A+ K+     +EWK+G+
Sbjct:   50 LVDDQGKPLDDQQIASLRNKVVGLYFSAQWCPPCRAFSPVLSEFLKNHKEEFAVVYVSADNTKEQMMDNVRGKGYWVVPFEEALLRQSLSSTHKITGIPTLVVVDGKTGTAFSRSGRTALIKDKVKAWEEWKEGR 184
[Close]
BLAST of mRNA_H-paniculata_contig750.15479.1 vs. uniprot
Match: A0A4P9ZMS5_9FUNG (Thioredoxin-like-domain-containing protein n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZMS5_9FUNG)

HSP 1 Score: 114 bits (285), Expect = 2.390e-24
Identity = 50/121 (41.32%), Postives = 78/121 (64.46%), Query Frame = 1 
Query:  223 PQQIFKGKMVGIYFSAGWCPPCKAFSPVLSKWAKKHSDDVVIVFCSFDKSEPQMKEYING-KGFLRIPFSPDSGRMKAAESYGVQSLPTLVIVNGDTGATVTTWGRSAVSKNPSGCLKEWK 582
            P   ++GK++G++FSA WC PC+ F+PVLS++ +KH  D+V++  S D+    MK+Y+     +L IPF   +  M+ A+   +Q LPTLVI   D+G  ++ WG  A+ KNP+ C+ EWK
Sbjct:   72 PPHRWRGKLIGLFFSASWCVPCQYFAPVLSRFIEKHEADLVLILVSMDRQPEAMKQYLRQYPRWLAIPFKHQATYMQLADRLDIQILPTLVICEPDSGRPLSAWGVDAIHKNPTRCIAEWK 192
[Close]
BLAST of mRNA_H-paniculata_contig750.15479.1 vs. uniprot
Match: A0A367ZKV4_9BACT (Thioredoxin n=1 Tax=Candidatus Ozemobacter sibiricus TaxID=2268124 RepID=A0A367ZKV4_9BACT)

HSP 1 Score: 107 bits (268), Expect = 3.340e-23
Identity = 56/131 (42.75%), Postives = 76/131 (58.02%), Query Frame = 1 
Query:  193 LEDESGTSVDPQQIFKGKMVGIYFSAGWCPPCKAFSPVLSKWAKKHSDDVVIVFCSFDKSEPQMKEYINGKGFLRIPFSPDSGRMKA-AESYGVQSLPTLVIVNGDTGATVTTWGRSAVSKNPSGCLKEWK 582
            L D  G  V+P  +  GK+VG+YFSA WCPPC+ FSP+L  +   H+ D  +VF S DK+     EY+   G         S    A A+ YGV+S+PTL+I+  D G T+T  GR+ V+K P  CL +WK
Sbjct:   47 LLDPEGNKVEPD-VLNGKLVGLYFSAHWCPPCRMFSPMLVAFRDAHTSDFEVVFISSDKNREAQFEYMKEVGMKWYTLEHRSEAANALAQKYGVRSIPTLIILGPD-GKTITEDGRADVTKKPDSCLADWK 175
[Close]
BLAST of mRNA_H-paniculata_contig750.15479.1 vs. uniprot
Match: A0A7J7JSX8_BUGNE (Nucleoredoxin n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JSX8_BUGNE)

HSP 1 Score: 111 bits (278), Expect = 1.770e-22
Identity = 56/134 (41.79%), Postives = 81/134 (60.45%), Query Frame = 1 
Query:  181 LSVSLEDESGTSVDPQQIF-KGKMVGIYFSAGWCPPCKAFSPVLSKWAKKHSD-----DVVIVFCSFDKSEPQMKEYINGKGFLRIPFSPDSGRMKAAESYGVQSLPTLVIVNGDTGATVTTWGRSAVSKNPSG 564
            +  S+ D+ G  VD + I  KGKM+GIY+SA WCPPCK F+PVL+++ KK  +     D  I+F S D  E    EY     +L + FS    +   ++ +GV+ +PTLVI++G+TGAT+T  GR  V  +P G
Sbjct:    8 IGESIVDKDGKKVDWETIAGKGKMLGIYYSAHWCPPCKKFTPVLAEFYKKRKESDKGKDFDIIFVSSDSDEASFTEYYKDMPWLALKFSEREAKANLSKKHGVRGIPTLVIIDGETGATITAKGREKVMSDPDG 141
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig750.15479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR43_ECTSI5.090e-7263.24Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
A0A1Y1YRL7_9FUNG3.140e-3846.21Thioredoxin-like protein n=1 Tax=Basidiobolus meri... [more]
A0A4P9XQ06_9FUNG2.850e-3749.22Thioredoxin-like-domain-containing protein n=1 Tax... [more]
A0A7S2TKD0_9EUKA4.340e-3746.15Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A4P9Z3L3_9FUNG1.920e-3448.44Thioredoxin-like protein n=1 Tax=Syncephalis pseud... [more]
R1DWI2_EMIHU8.180e-3255.26Thioredoxin domain-containing protein (Fragment) n... [more]
A0A139AF37_GONPJ3.520e-2740.74Thioredoxin-like protein n=1 Tax=Gonapodya prolife... [more]
A0A4P9ZMS5_9FUNG2.390e-2441.32Thioredoxin-like-domain-containing protein n=1 Tax... [more]
A0A367ZKV4_9BACT3.340e-2342.75Thioredoxin n=1 Tax=Candidatus Ozemobacter sibiric... [more]
A0A7J7JSX8_BUGNE1.770e-2241.79Nucleoredoxin n=1 Tax=Bugula neritina TaxID=10212 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig750contigH-paniculata_contig750:23154..32791 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score244.2
Seed ortholog evalue4.8e-62
Seed eggNOG ortholog2880.D7FR43
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cellular oxidant detoxification
EggNOG OGsKOG2501@1,KOG2501@2759
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-09_003560.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size2544
Cds size555
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig750.15479.1prot_H-paniculata_contig750.15479.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig750 23229..30877 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930920.5931106-UTR-H-paniculata_contig750:23153..232281622930920.5931106-UTR-H-paniculata_contig750:23153..23228Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig750 23154..23228 +
1691481511.0499756-UTR-H-paniculata_contig750:23153..232281691481511.0499756-UTR-H-paniculata_contig750:23153..23228Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig750 23154..23228 +
1622930920.6503322-UTR-H-paniculata_contig750:30877..327911622930920.6503322-UTR-H-paniculata_contig750:30877..32791Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig750 30878..32791 +
1691481511.108615-UTR-H-paniculata_contig750:30877..327911691481511.108615-UTR-H-paniculata_contig750:30877..32791Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig750 30878..32791 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930920.6053107-CDS-H-paniculata_contig750:23228..233991622930920.6053107-CDS-H-paniculata_contig750:23228..23399Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig750 23229..23399 +
1691481511.076936-CDS-H-paniculata_contig750:23228..233991691481511.076936-CDS-H-paniculata_contig750:23228..23399Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig750 23229..23399 +
1622930920.618473-CDS-H-paniculata_contig750:28944..290691622930920.618473-CDS-H-paniculata_contig750:28944..29069Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig750 28945..29069 +
1691481511.0887504-CDS-H-paniculata_contig750:28944..290691691481511.0887504-CDS-H-paniculata_contig750:28944..29069Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig750 28945..29069 +
1622930920.6323228-CDS-H-paniculata_contig750:30618..308771622930920.6323228-CDS-H-paniculata_contig750:30618..30877Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig750 30619..30877 +
1691481511.0993772-CDS-H-paniculata_contig750:30618..308771691481511.0993772-CDS-H-paniculata_contig750:30618..30877Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig750 30619..30877 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig750.15479.1

>prot_H-paniculata_contig750.15479.1 ID=prot_H-paniculata_contig750.15479.1|Name=mRNA_H-paniculata_contig750.15479.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=185bp
MAQDDGHGAPAGAVCDPVSGVCKMPPRAGGAMIPGLSVSLEDESGTSVDP
QQIFKGKMVGIYFSAGWCPPCKAFSPVLSKWAKKHSDDVVIVFCSFDKSE
PQMKEYINGKGFLRIPFSPDSGRMKAAESYGVQSLPTLVIVNGDTGATVT
TWGRSAVSKNPSGCLKEWKDGKDGVSWLQLMKPW*
back to top

mRNA from alignment at H-paniculata_contig750:23154..32791+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig750.15479.1 ID=mRNA_H-paniculata_contig750.15479.1|Name=mRNA_H-paniculata_contig750.15479.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9638bp|location=Sequence derived from alignment at H-paniculata_contig750:23154..32791+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCCTCTGTTCCATGTGCACAAGTTATACAAGACTTGAGAGTAGAAAATA
GTATCACAGAGGTTTCATCTTTACCATGGCTCAGGATGATGGACATGGTG
CTCCAGCTGGAGCTGTGTGTGATCCCGTTTCCGGGGTGTGCAAGATGCCA
CCTCGAGCGGGCGGTGCGATGATCCCTGGACTTTCCGTCTCTTTGGAGGA
CGAAAGTGGTACTTCTGTCGACCCGCAACAAATATTCAAGGGAAAGGTGC
CACTACAGACAGGATAGATGAAACCATAGACCGTAGAGTAGTAAGTAGTG
CACCTATAGAGGGAAAAGGGAACAGGTACCCGCAGTGTTCGGACTAATGA
AATGAACTCTCGGCTGACGGAATTTTACAGCCGTGTGTATTAACTTGCAC
TACGTAAGACTGGAAAAGCTGCTGGGGCGAACTTCGTAGCATTAATAGAA
GACGGAGCTACTCAATTGTACACGTAATGTCCAATTGTACCTTCTACAGA
CCACTGAAAATAACAAATTCTGTGGATGTTGCAGGTTGAACTCTGTCTCT
GTCGGTTAAGCAGATATTTTGCTGTGCAAGCGCGCATCACCTAGTTTACA
ATAGTTTCAAGAGACAATTGCTCCAGTGCGACACATTTATACAGACAGTG
CACTTAACAGAGTACAGATAGCAGCAAACTCAACAGACTGGAACTGCGTA
TCTGTTCACCGCCGCGCCCTCGTACTCTGGACAGCATGAAGTTATACCTG
GTTACACGTGACAGCAAGGACCTTTCCCCCCCCTCCCATCACATTTTTGG
GACTCAAAAATTTCGCCCTTAGGCCGCTCGTCTAAATACACCTAATCCCC
ACCTGAACAATTTGGAAAACTAGCTCTTGTGGCATGTTTGCCGACGGGAG
AGGACACTGGTGATGTTCAAATAGCCAGTTAGTCAGCCAGTAGTCCACTA
TAGACAGTAATAGAGCACAGGCAGATGGAGGTGGTGGGCACGATTTTGTC
CCCAAGCCGGCTACATTTCTGTCTCTGTCTCGATATCGGTAAAATTACTG
TTCTTTGTTTTTGATCTGATCAGTTTTCAGTCTTGTTTAGAATCGAAGGC
TTTTCTAAAATCGAGCAAAAGTGTGCCCCACTTAATTTACTATACCCCGT
AGAAGCATCTCGCGATCCGATTACCCTTTCTGTCGACACAATTTTAGTCA
GATGTCCGTCCTGCCGCTGCACACTCGGCTCTACATGTTCAGGATTAGGA
GTAGGGGTTGCGTTGGGTTCTGGTATAGGGAAGCTTGCCTAACCTGTTTG
AACATCCGTAATTGGGTGCTTCACAAGAACTCGTATTATTGGATGATGCG
TTGCTTCGCATGTACCGGTAAATTGATAAAACAATGGGTCGATATGATAC
TATTTGGTTGTCCAAGAAAGCGTGATACATATCGATATGATAATTACTTG
ATATTAATCAAGGGTGTTCTCAGTAAAAATGCCGAGGTAAAATACCGTGG
TATTGCGCTGTATTCGGTATTCGGTATCGATACCTTGAAAAAAACGATTT
CCCCCTTATCGTTACCGTGCACGCGACAGCGAAACGTGATTACCGCGGTG
TCAGAGCCCTTTCTCGTTTACCTTACCGCTGGTCTGAAATGACTGTTCGC
CAAATAATATACGGCGGGTGTGGCCGGGTTGATGTATTAGCGTGCCCGTG
AGCATTCGTGTCATGCTTCAGTGACTAGCGCGCGCACTTGGTGCACAGTT
GTTCAGTTGTGGTCGCCAGACATCATACGTGTAGTATGAGCGCGGCAGCC
GCTGGCGATGGCAGCGCGAGTGCTGCCGGCTCTGCAAACGCTGCTCGCTC
TGCAGTCACTGCTGCTTCGCAAACTGGTGGCCGTGTAAGCTCAGCAGCCA
CTATTCCTGGCCCGCGAGCTGGTGGCGGTGCTGTCGCTGACCCCGCTAGC
AAAATAGCGACTCTCACTTCTCCGAACGGCTCAGCGATCGAGGTCAAGAT
TTTCCCGTCCTTCGGGCAAGCGCACATAGCTTGGATTTGTCGTATTATGT
GTGAGTTTACACTAGCTGCCAGGCGGAGCGCAACTTTTCTGCGCTCGCTC
TGTTAGTCAGCAACCTGCACAAGACGATGCTCCCGTCCAAGGTAGAGAAA
ATGATCTTCCTCAAGTTGAACCAAAACTTCATCCTGTCGTTTCGCGAGCA
GCCAAGGTGGCCAAGGTCGCGAAGGAAGTTGTCACGGTGCTGTCAAAAGC
AGCTGGACATGAAGTTGCAATTGTGGTTTAGTGTGTTAGACCAAAGTTAA
TCGATAACTACGTCAGTAAATAAACATGAAAACGAAAACGAGAAATACTT
AGGGCTGTGATTGGTTCGAAGGAGTGAAACGTAACTAAGTCAGTTTTCTC
TTCCGAGAAGCTTCACGAAAATCGTCGGTTCCTCAAAAACGAAAAGTTCT
TTCAAAATAGCGAACAGGTGGCGCAAATATGGGCAGAAAACCAATCGGTG
CCCTGTTTATTATCGCGTCATATTTGTTCATGGGTATAACATTGGTGCGT
CGTGCAACGAGTGCCTGCGTTTTCATCTAGTACAGCACCACCCACACACA
CGACCAGTAGATGCTCAGCATCTCTATGCATAACCACAGTCCACCAAGGT
ATGGGAACGTTCACTCAATATCATCAGTTCAATATTGGTGGAGCAGCAAT
AATTGCCATGAACATTTGAACATCTTTTGTCCAGAAACCGTCCAGGGGGT
TACTGTTTTTGCTGCCTGTTGTGGTCACATACACGCTTGTCTCATCCACT
TCTTGACAGACTCAAAAGAAGAGCTACCTCTTGGGCTATCCAGCATTATT
TCGGAGGCAGTGTACTTGTAGATAGGTTTCTTGGTCAATATTTGAACGAA
TTAATATGGGGTGGAGTTGTTGGTTTTCTCTTAGTCTTTGTTATTCGATC
GTTTTCCATACTTTCCCATGGTTTCTTTCCGACACTCTGGACTTAGAACA
GAAAACGAAAACGAAAACGAAAACGAAAACGAAAACAAAATTATTTCGTT
TTCGTTTTTGAGTTTGTTCAGACACGCCCTCAGCGTGAGGCGTTTATTTG
TTCGATATCTCTATCCTGCCGGTTTTTTGTTTTGATTAGTTATGTGGACA
TTATGAACTTTTATTATTTTGTATTGATTAGAGATTTCGGCGACAGGTTC
AATTTCTGCGAAATTTGCTCTGCTTTCGTCAGCTAGTTTTCAAGTGCGGG
CTCCTCGTAAAAATAATTCAGCGTTTTTGTCCATTGTAGTGCAGTTTACT
CTCTGGATTTTTTTTCTTGTCAGTTCATTTTTTTTTCCTGCGATTTTGCG
TCATAAATCATACATATGCATACCATCCTCATTGCGCCGGACGCGGCGGC
GATTGTAGTCAACTCCAAGAGTTGTATATTGTTTTGTGACATTTTGTCTT
GAAACTACAAATCATACACGGACCTACGCCCGAACGGGTAGGGTAGCTCG
TGAACTGAGCATGACTGGAAGTCTAGCCAGTGGTCTTCTAGTGGGTGCAT
CCCCCACACTGCCTACTTCGTTCGGCCGAACCGGGGTGGCGCCTACCCTG
CAGAGGAATAGATAACTCTGTTCTGTTAAAGGACATGTAGAAATACTTCG
GTAGAAATACTTGAAGTATGGAAGCATCGGATAAAGGTTTTGTCTTCGCC
TTCCGGGGGTTAAAACCCCTCCCCAACAACTACGAATCATACACAAGTTG
TTGGAAAAGGTTCTCGGAATAAACGAGTCGCCTCCTTGTGAAACTCCTCG
TACAAACCATTTAATGCATGCACGTAGGTTTTATAACTGTTTGTTGTATC
TTGCGCTTGGGCAAGGCATGGGCACCGAAAAATGTGCCAAGTACTAACTG
CCGTACCGCGAGTAACAAAAATGAATATCGCTTACCGAGAAGATACCAAG
AAACGTATATACCGTACCGTACCACGCTACCGATATACCGAATACCGTCT
ATCCGCACGATACCGAGGAATCAATTACCGTAGCGAATAAAGTATTTTCA
AATACCGTTACCGAGAACATCCCTGATATTAGTACTATGAGATCAAAGCG
TATAACCTGATGATAAGAACATGCTGCGCCCAGAATAGACGATTGCAGAA
ATTCCCAACATTAGGTGAATGAGGGCCGTTTCTTTTCGAGGCACTGAAAA
AAGGAATTTTTCGTGTTTAGGAAGTTGTTTCTTTTTTTTTTTCATACTCC
GAATATCTTAGTTGGAGTTTAATTAATATCCAGGATTTTTTTTTCTTTTT
CAGGTTGTCAAAGTTTTTACTGAAACAGATCTGGTTCAAATGGTTCAGTT
CACGAAACTTGAAAAAAAAAAAAATGCTGAGAAACACCACAACTGCGGAT
ATTCCCAAAATCGACAGGCACAAGAGAGACAGAGTACACGCACACAAACT
CGCATGATAGGCCTTGCTCAGCTACCTTTGTTTTGGCATGAATCCGTGCT
GTGTTCGAGATGCTCAAGCTCGCACGACAAACACCTGTTTTTTATATTTT
GGCTGATTCTACCGGAACCAAGTACACTAGTGCCCAGTTTATCAAGACCG
ACGGCCCGCGCTACGTTTGGTCGTGCCAGGGGCAGTAACGGTTTCACCCT
CCCCTGATAAATTCGAATGCTTGCAAATGGGTTTCACAAAAAACTGAAAT
TTTCGCCTGAGTTTCAAAATGAGCTCGTGTTTTTTGTGTGCCCCGGACCA
TCCACGACAGCCTACTCGTAAATCGAATGGACAGGGCTGGGTACTTGGTT
ACTATGTGTCCACTCATTCTGAAACTCAGGCTAATACTTTCAATGTTTTG
TGAAAATCATTTGCCGGTATTGGTATTTGTCCGGGGGGTGTAAAGTTGTC
ACTCTCACGATGGGGAGTGCTGTCTTCCTCTGTCGGCCGTCTGCAGTTTA
TCACCTTTGGTCGACACGTTGGGGCCTTGGTCGTGCCCAGTCGCTATGTT
TTCTCATCATAGACAACATACTCATTTTCATTTTGGTTTACACAACGACC
ATTTCGTTGAGTACAAAGTCCTGGCGGCTTTCGAAAAAAAATTGTGCAGA
AATATGCCAAGAAATATGTACGATTGGTCATTGGTCATTGGTCATTGGTC
AGGGTATGACCTTGTAAGCCGCAGATTTTTGTGCGTCGAAAACTTGCGCC
GTCCGTAACTTTGCTTTTTGGACGCTTTCTGACGGTTTTGTCCCTAAAGA
CGCGGTTGATTGTTGGTGACATACCCCACATGGCACGTACGGAAACAAAT
GTGGGGGGTGACCATGAGACCTAATCATGCCACACAACATTAACTCGTCG
AGGTCCCCTGGTTATTTGATGTCCCCAGCTGAACAATGAGGTGTTTCTGG
CTTTGAGTTGTAAATTTCACGGTCAAAAAGTGCGTATTTCGCACCATTGT
TAGTTCGCATGTGGGCCCCAGTGCTACATAATTCGTGTGTGAGCGTTCGC
ATCATCACTCCTATCGCAGCGGGAGTTGGTTATAAGCGCTGGAGCATGAC
CACTTGTTCAGTGACTGAAAAGGCAAAAATCAACATCGCATCTAGGTTTC
TGTTGTGTCCTGTGGCATCCGTTAAGTATGTTTCCAAAAATGCATCACGG
CGATACATGTTTGGGAATTATTGACATCTGTATATCTGTGTATATATATA
TATATGGCACAATCATGTGCGTGGGAGTGGCATTGCTTACATTTCCTTCC
TCTCCATTACATTTCGTTTTTCGCTTTTCGTTTTTGGTCAGATGGTGGGA
ATTTATTTCTCGGCGGGATGGTGTCCTCCATGCAAAGCCTTTTCACCGGT
GCTGTCGAAGTGGGCCAAGAAACACTCGGACGACGTAGTCATTGTCTTCT
GCTCGTTTGATAAGAGGTCAGCATGAATGGACTCACTGTAATGCGATTTC
ACCACGAAAGACAAGATAAATAATTCCTGATTCGCACTGTACGCACGGGG
TTTGGGGGCAAACCTTGAAAACTATTTTTGGTAAGGCATGTGAGCAAACC
CGCACGGGCTACTTACTGTATACTTGGATTCTTTGCTATTAGCACTGTTC
AAATGGGGCCACTGTTTACTAGAGGTCGGTCAGTTAAATGAAGTAATACT
GCGGTACGGTAGCACTGAAGTTCACTCGTAGTATAAATCCTGCTGCTAAT
TGTCCAGCCTGTATTGCTGTAATCAATTGCAACCCTCCCAAAAAGTAAAC
TAATAATGGCCGCTCTAAACAAGACCGGCGTGTCTCCGATTTTTTATGAT
TTCTTTCCGTTTAACCGTTTTCCAAAAATTGAGAATTGCGATGGCGAGCT
CAAAGTTGAAGGAAAAGTGCAGACATCCTGTACAGCATGTTCTCTTGATA
CATCTGGAGCACTTTGCTCACAGTCGGCAACGTATTAAGCTTGCTGTCGC
TATTTCCATTTTTCGGAATATAAAAGAACGGCTGAAAAAAGCTGCTTTTG
GGGACTTTTTCCCCCTACAGAAAAATGTGCACTTTTTGGCTTTTTTTCGG
TGGAGTGATTTTTTTCACGGCGTTTGTTTTGGCATCAAAAGTCAATTATT
TGATTGAGTATTTTGGGGTTCAACCCCAAAAAAATATATAGGATTGTATT
TTAAAAATTATTTAAAAGGTCGGAGATTGTTCAAGGGCGTCTCTAATCAC
GACATAGTATACTTTTGGGACCATACCAAAAGTTCCCCGAAAGGGCCTTT
TTTCGCCCGTGTACTTTTTTTCACGGCGCGTGTTTTTGTGTTGGACGTCA
ACTGTTCGACCCAAATTTTTGGCTTTCACCCCACAAAAAGATCTAGAATT
CCATGAAAAACCCCCGAAAAAACTGGAGATGTTTGAGTGCATCTGTAATC
ATAATTAAGTATATTTCGTGAGACAGGAATGAAGTGAATTGGAGAAAATT
GAACGGTGCGATAGGGAGATCTCTGGATGTTGGGATTACAAAACGAAGGC
GATAGCCCATCTGGGAGACGAAAGATGTCCGGAAAATTCGGTTGAGGTGA
ACGAGAAAATTGAAAACCTTGTTCGAGTCACATTTTCGACGTAGGAAGGA
GCGGGTTGCCATCGGAGATGTTTTTGATGGAAACAAGTTGTCGTCCTGTC
GAGGAGAGAGGACGGTTGGTTAGTGGCCTCACGGTGATGATTACACCTCG
CCCGCCCAACCCTATTTTGTTCAGTTTTGTAAAGGATAAGTAGGCCAGCT
TGAAGGTGCTGGACACATCTCCATCGTCTTTCACGACCATCGTCATGTTT
TCTCCTTCACACGAGTTCGTATTCTTGTACGTTTGAGTCGTTTTTTTCAC
TCTATGGTATGTCCTGGTAATGAAACTCTCCTCGGCAATTGCTCCCTCCC
TTATGTTTCTGCTTCTTCCCCCACGCCTCTTTCGGCGCACATGCTGTCCC
GCCTCCATTTCGCAGTGAGCCACAGATGAAGGAGTACATCAACGGTAAAG
GCTTTTTGCGGATTCCATTTTCGCCGGATTCCGGACGCATGAAGGCCGCG
GAATCGTATGGCGTGCAGAGTCTGCCCACCCTCGTTATCGTCAACGGTGA
TACTGGGGCTACGGTCACCACGTGGGGACGTTCTGCTGTGTCTAAAAATC
CTTCTGGTTGCTTGAAGGAGTGGAAAGACGGCAAGGACGGGGTATCATGG
CTTCAACTGATGAAGCCATGGTGATCGTATGCGTGGGGACCAAAGGGGAT
AGTAGAGAACGAGAGAAAAAAAGGATGAAGAAAAAGCGAGAGAGAGAGAG
AGGGAGAAGAAACGGGTCTACAATTAAGTAATCAATCATTCAGTCTATAG
AGGTAAATCACGGGTCCAATGTTGAGAAACTCTGATTTTGGGTGAGTCTC
GAAATCTTACCTTAGGGATAATCACGAAGCATTGAAGTACTGTCCCTTAC
GTGCGTATTGGAGTTAGTACAGTTGCTGTTTTTGGGGGTAGGGCTCAAAG
CCTTGGTATATACTAGCGCTTGACCTGAAATGTGAGTCTTTCGTATAATA
CATTTTGTGTAGATACTAGTATTATTTTCAGGAAGTAGTATGATGGCCCC
CAGTTGGGCACAAATCTCACGGGAAATGTCCTGAAATCCCGTAGTCATTT
TCGATGCTCAAATTTGTTCGTATTAAGCTGATTTCCTTCTCTCAATGGAG
TGGTGTCTCAATGGGCTGGTCCTGTATGACCTGACGGCCGCTCGTTCTGG
CTCTGCTCTGGGGGGTGACTTGGTGACTTTTCATTCTAGGTACAAGGTAC
GATTGTTTGGGTTGGTGCTGTTTGATGAGGTTGCGGCCTTCGGCTGGTAT
ACATATTGGCGTTACTCTGCTGGATGAAGGAAGCTTGGAGCTTTTGACGG
CAGCACAGGGGTTTTGCGTTGAGATTATTTGTACTACAGTAGAATACACT
TGCTTCTTGTTTTCGTTATACCTTCAAATCGACCGATTGTTTTGAATACA
AGAGCGCTGGATTTTTCAATCTGTAGTCAAATTCAAATTTGGCACAGGTC
GAGTCATACCTTGATATCTTCTTGATGCCATGCTCACGGCCGAGCCTGAT
TTTGCGTTTTCCGATTTGATGTTGGGAGAGTTGGTATATTGCAGTCGTTG
CATCTGGAAATTCGTCAAGCACGACTCTTTAGATGCAATGAACAGTGTGT
ACTAGAAGTTCAGGATGTTCTTTTCTTCAGGATGAAACATGTTTTCATAA
ATTTCACGATATTACGTGCCTAATCAAGGATGATCCGAACGGAGTCTGTG
AAAGTACATGGTGTCAGCGTTTATTTGGCGTTGGTGTTTTTATATGTTGG
GTCTTCTGCTCCCGAGATATGGGCATTCAAATGAACTCTCCAGTAGCTGT
TCATGGTTGCCCTTTATTTCGCTGTTTTGCCCTACATGTTGAGATTCCCT
GATTCGAATTTTACCGAAAATAGACGCGTTTTATCCCTATGGAAGACAAT
AATATTTCAAGCTCGTTGGGTTTCGGAGATGGGATATATTGCGCAAATTA
TAGCTGAACTGTTTTCATCCTAAAGAAAAAAAGCGTTCTAAAGAGAAAAA
CCACACTGAAGAGAAAAACCATCCTAAAGAGAAAAAGCATTCTAAAGAGA
AACACCATCCTAAACTTGTAGAACACACTGGTAATTGTTCTTCCCTGTTT
CCTAACGTGTAAGAAGAAGGCGAAAGGGAGATCTATTGGAAGCAGAGGAA
TATCGAGAATAAAGAGCAAAAGATAGATTGTCATGTGTGTGATTCCTCTC
GTCACCCGCATGTGGAGGGTGGGTGCTGAGGTTTTTGCGGAGACCTATGT
GCGTTTTTTATTTCAGTAACGCATTGTGGTGCTTGCTGGGGTGGTTCACA
AGGTAAGAGAGACATATAAAATATCCGCAGTCTTTTTTCTCCTTGGAACT
AAAAAAATGGCGGAACAACCGGGTGTGGGTGTGTTGTCATGTTCAACGTG
CAAACATGCTTCGTGGTTCAAGAGTCGACATTGATGCCTTTGTGGGAGCC
GTTTCAATTGACGGGGTCGCCCCGTCCGAATGGTTACCGCCTCTACGTGG
CGGACGGGATCAACTCAACCCGGGGTAACTCCCTAACC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig750:23154..32791+

>mRNA_H-paniculata_contig750.15479.1 ID=mRNA_H-paniculata_contig750.15479.1|Name=mRNA_H-paniculata_contig750.15479.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1110bp|location=Sequence derived from alignment at H-paniculata_contig750:23154..32791+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTCAGGATGATGGACATGGTGCTCCAGCTGGAGCTGTGTGTGATCC
CGTTTCCGGGGTGTGCAAGATGCCACCTCGAGCGGGCGGTGCGATGATCC
CTGGACTTTCCGTCTCTTTGGAGGACGAAAGTGGTACTTCTGTCGACCCG
CAACAAATATTCAAGGGAAAGATGGCTCAGGATGATGGACATGGTGCTCC
AGCTGGAGCTGTGTGTGATCCCGTTTCCGGGGTGTGCAAGATGCCACCTC
GAGCGGGCGGTGCGATGATCCCTGGACTTTCCGTCTCTTTGGAGGACGAA
AGTGGTACTTCTGTCGACCCGCAACAAATATTCAAGGGAAAGATGGTGGG
AATTTATTTCTCGGCGGGATGGTGTCCTCCATGCAAAGCCTTTTCACCGG
TGCTGTCGAAGTGGGCCAAGAAACACTCGGACGACGTAGTCATTGTCTTC
TGCTCGTTTGATAAGAGATGGTGGGAATTTATTTCTCGGCGGGATGGTGT
CCTCCATGCAAAGCCTTTTCACCGGTGCTGTCGAAGTGGGCCAAGAAACA
CTCGGACGACGTAGTCATTGTCTTCTGCTCGTTTGATAAGAGTGAGCCAC
AGATGAAGGAGTACATCAACGGTAAAGGCTTTTTGCGGATTCCATTTTCG
CCGGATTCCGGACGCATGAAGGCCGCGGAATCGTATGGCGTGCAGAGTCT
GCCCACCCTCGTTATCGTCAACGGTGATACTGGGGCTACGGTCACCACGT
GGGGACGTTCTGCTGTGTCTAAAAATCCTTCTGGTTGCTTGAAGGAGTGG
AAAGACGGCAAGGACGGGGTATCATGGCTTCAACTGATGAAGCCATGGTG
ATGAGCCACAGATGAAGGAGTACATCAACGGTAAAGGCTTTTTGCGGATT
CCATTTTCGCCGGATTCCGGACGCATGAAGGCCGCGGAATCGTATGGCGT
GCAGAGTCTGCCCACCCTCGTTATCGTCAACGGTGATACTGGGGCTACGG
TCACCACGTGGGGACGTTCTGCTGTGTCTAAAAATCCTTCTGGTTGCTTG
AAGGAGTGGAAAGACGGCAAGGACGGGGTATCATGGCTTCAACTGATGAA
GCCATGGTGA
back to top