mRNA_H-paniculata_contig750.15476.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig750.15476.1
Unique NamemRNA_H-paniculata_contig750.15476.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig750.15476.1 vs. uniprot
Match: A0A6H5L0T6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0T6_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 1.050e-54
Identity = 102/144 (70.83%), Postives = 120/144 (83.33%), Query Frame = 1 
Query:    1 TEVSKRLEIVFPAVLRASFVLFSVIYSYSVVGFAMYCATPLGIYELDPIA-------FAFYRHAISFASLHESIAAMTDVVMLSNWPIFMDAAGDVGNSVIARIFFYSFKGLTFYFVMPVMLGFIVQSYMAAKLPGTE-ANAQP 408
            +EV++RLE VFPAVLRASFVLFSV YSYSV+ F MYCATPLG+  +D +A       +A+Y+  +SFASLH+S AAMTD+VMLSNWP+FMDAAGDVGN V A+IFFYSFK LTFYFVMPVMLGFIVQSYMAA +PG + AN +P
Sbjct:  696 SEVARRLEFVFPAVLRASFVLFSVTYSYSVLAFDMYCATPLGVEPVDSVADHSMMQRWAYYKDVLSFASLHQSFAAMTDIVMLSNWPLFMDAAGDVGNVVTAKIFFYSFKVLTFYFVMPVMLGFIVQSYMAAHIPGADSANNKP 839
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BLAST of mRNA_H-paniculata_contig750.15476.1 vs. uniprot
Match: D7FR41_ECTSI (Voltage-gated Ion Channel (VIC) Superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR41_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 2.360e-54
Identity = 102/144 (70.83%), Postives = 119/144 (82.64%), Query Frame = 1 
Query:    1 TEVSKRLEIVFPAVLRASFVLFSVIYSYSVVGFAMYCATPLGIYELDPIA-------FAFYRHAISFASLHESIAAMTDVVMLSNWPIFMDAAGDVGNSVIARIFFYSFKGLTFYFVMPVMLGFIVQSYMAAKLPGTE-ANAQP 408
            +EV+ RLE VFPAVLRASFVLFSV YSYSV+ F MYCATPLG+  +D +A       +A+Y+  ISFASLH+S AAMTDV+MLSNWP+FMDAAGDVGN V A++FFYSFK LTFYFVMPVMLGFIVQSYMAA +PG + AN +P
Sbjct:  563 SEVATRLEFVFPAVLRASFVLFSVTYSYSVLAFDMYCATPLGVEPVDSVADHSMMQRWAYYKDVISFASLHQSFAAMTDVIMLSNWPLFMDAAGDVGNVVTAKLFFYSFKVLTFYFVMPVMLGFIVQSYMAAHIPGADSANNKP 706
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BLAST of mRNA_H-paniculata_contig750.15476.1 vs. uniprot
Match: D7FGS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGS1_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 1.220e-38
Identity = 79/143 (55.24%), Postives = 103/143 (72.03%), Query Frame = 1 
Query:    1 TEVSKRLEIVFPAVLRASFVLFSVIYSYSVVGFAMYCATPLGIYELDPIA-------FAFYRHAISFASLHESIAAMTDVVMLSNWPIFMDAAGDVGNSVIARIFFYSFKGLTFYFVMPVMLGFIVQSYMAAKLPGTEANAQP 408
            ++V+ RLE VFPAV+RASFVLF++ Y+Y+VV +AMYC+TPLG   +  +        FA  +   +FA+L  S A+M  VVM SNWP+FMDAAG VGN V+A++FFYSFK + FYFVMPV+LGFIV SYM A +P  E   +P
Sbjct:  208 SDVATRLEFVFPAVIRASFVLFALTYTYAVVAYAMYCSTPLGGEPIGDLKDDSMVKRFAAVKEVANFATLPRSYASMMYVVMFSNWPMFMDAAGVVGNLVVAKVFFYSFKAIGFYFVMPVLLGFIVTSYMNAHVPTVEDPPKP 350
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BLAST of mRNA_H-paniculata_contig750.15476.1 vs. uniprot
Match: A0A836CJH6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJH6_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.970e-7
Identity = 32/83 (38.55%), Postives = 47/83 (56.63%), Query Frame = 1 
Query:  160 YRHAISFASLHESIAAMTDVVMLSNWPIFMDAAGDVGNSVIARIFFYSFKGLTFYFVMPVMLGFIVQSYMAAKLPGTEANAQP 408
            Y   + + S  +S+ +M D ++L NW +FMDAA  V     A  FFY FK        PV+LGF+VQ++M A++P   A + P
Sbjct:   82 YSEVVGYESFGDSLLSMLDTLLLGNWTLFMDAAF-VAIGWPAWWFFYLFK--------PVLLGFVVQAWMGARVPAAAAPSPP 155
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig750.15476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L0T6_9PHAE1.050e-5470.83Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FR41_ECTSI2.360e-5470.83Voltage-gated Ion Channel (VIC) Superfamily n=1 Ta... [more]
D7FGS1_ECTSI1.220e-3855.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CJH6_9STRA2.970e-738.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig750contigH-paniculata_contig750:446..3765 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size408
Cds size408
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig750.15476.1prot_H-paniculata_contig750.15476.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig750 446..3765 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930920.4945357-CDS-H-paniculata_contig750:445..5941622930920.4945357-CDS-H-paniculata_contig750:445..594Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig750 446..594 +
1691481511.0143507-CDS-H-paniculata_contig750:445..5941691481511.0143507-CDS-H-paniculata_contig750:445..594Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig750 446..594 +
1622930920.5271676-CDS-H-paniculata_contig750:1785..19451622930920.5271676-CDS-H-paniculata_contig750:1785..1945Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig750 1786..1945 +
1691481511.026722-CDS-H-paniculata_contig750:1785..19451691481511.026722-CDS-H-paniculata_contig750:1785..1945Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig750 1786..1945 +
1622930920.550153-CDS-H-paniculata_contig750:3666..37651622930920.550153-CDS-H-paniculata_contig750:3666..3765Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig750 3667..3765 +
1691481511.0379722-CDS-H-paniculata_contig750:3666..37651691481511.0379722-CDS-H-paniculata_contig750:3666..3765Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig750 3667..3765 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig750.15476.1

>prot_H-paniculata_contig750.15476.1 ID=prot_H-paniculata_contig750.15476.1|Name=mRNA_H-paniculata_contig750.15476.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=136bp
TEVSKRLEIVFPAVLRASFVLFSVIYSYSVVGFAMYCATPLGIYELDPIA
FAFYRHAISFASLHESIAAMTDVVMLSNWPIFMDAAGDVGNSVIARIFFY
SFKGLTFYFVMPVMLGFIVQSYMAAKLPGTEANAQP
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mRNA from alignment at H-paniculata_contig750:446..3765+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig750.15476.1 ID=mRNA_H-paniculata_contig750.15476.1|Name=mRNA_H-paniculata_contig750.15476.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3320bp|location=Sequence derived from alignment at H-paniculata_contig750:446..3765+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGAGGTTTCAAAAAGGTTGGAAATCGTGTTCCCTGCCGTGCTACGGGC
GTCTTTTGTCCTATTCTCCGTCATCTATTCGTACTCTGTCGTGGGCTTCG
CCATGTACTGTGCGACGCCGCTTGGGATCTATGAGCTGGACCCGATCGCG
TCTAACACCATGGTGCAAAGGCGAGTTTGTAAAAACATCGGTTTGCTTAG
ATTTTTTCCCATCATTTCTCCTCTTGGTGTAGATCATATGCACAACAGGT
GAAACGCACGCGAATTTTCAAAGATTTGCATGGTCGGCTAAAAACCAAAC
GGTGAAGAAATAGGGCTTTTTTCTTTATTCCCTATAGACATAAAATAGAC
AATGCTAGTATTCCCGTGTGTGTGTGTGTTTGTGTTTTCCTTCTGTGTCA
CAGTTTGTTTGTTGTGCATGGTAGTTGATAGTTGATGGCGAATCGCGAAG
TATGGTAATGTCTGCGCCAGCACTACAAATGTGCTTGGGCGGCTTTTTCT
TGTTGCCAAAATTCATGATCACCCATGGATACCTACCTGAAATGGCACGC
GACAGACAGAGACTGGGCACCGCCGCATGCTGTGTCTGGTAGGAACATGT
TGCAACACCACGGTTTGCTCGATAGCTTGAGACCACCTCCTGTTGATGGT
TTGTCATTCTAAGGGCAAACGTATGCGTCGTAAACTCTTAACATGTGGCT
GAACTCACGATCAGGAGAAGTGGCATCAATGTCTTGGTTGCCCACAGCAT
CGCGCTCGCTATTCATGGACTGACTGAATGAATGAACGATTGACTTTGTG
CCATGATTGCTTCACAAAGTGGTGGTGGTGGTGGTGGTGTACGCCCAAAT
TTCGCTGGAAAAAAAATACGGTGAAGTTATTAGGTTCGTTCATAGCAAGC
ACTGAAAAACGGGATTTTTCAGACGCTTATTTGATTTTAATAATAGCAGC
GGAAATTTAGGCTCATATATTTTTTTCATAATTTTCCCATATCGCGTGTT
ATGGTGCGTGCCGTGCTCAACACACTTTGTGCGGCAGTGCAAGAGGCGTG
GGGTGCCTTGTAGTAGCTATCGTACGAGGACTGGCCTTCGAAAGCCTTGT
GTGTGAGTTTGGTGACGCGTTTACGCTGTCTGTATGTAGCACCTAAAAAA
AATCGTTTTTCTGTGGCCGTTAGGAAATAATACTTAAAATTGAAGTGTTC
TTGTGTGTGTGCAAGATAATAATGAAAGTCACGAATGATTAAAAAAAAAT
TATGCCTTGTTGTTTTCGAACAATGACGTATCTGTGTGCTCCTAAAATTA
TTTTGGCCGTGTTTGCTCAATAATAATTTCCGTGTCGCAGGTTCGCTTTT
TACCGACATGCGATTTCATTCGCCTCACTGCATGAGTCTATCGCCGCTAT
GACAGACGTGGTCATGCTCAGCAACTGGCCCATCTTCATGGACGCAGCGG
GTGATGTAGGCAACAGCGTTATCGCGAGGATATTTTTCTATTCCTTTAAG
GTGCACATTACAGTACAGTATAGTACAGTACAGTCCCTACCTCAGTATAC
TCTAACGGCCCGATCCGTTCATTGGAAACATATCTGCATTTTTTTTTAAC
GTTGAATCGATGCGTGAAAATTTTATTTAAAACAAAATATATAACTTGGT
ATTAAAATGAAAAAAGAAATCAATTTGTAGCCCCGTCACTGGCCAACTCC
TGCTATGAGTGTACTGGATTTCGACGAAGAGAAGGTGCTTTCTTGCTTGA
CCGAACCCGTTCACGCGCCGTCAGCCTGGTTTTTTTCGATTTTCTCATGG
GGAAGTCGGTGGTGTAGTGGATGTGGGGATATATGGATGTACGGATGTGT
AGGGTAGGTGGGATCAAGAAGATGCCCAGTGTATCGTATAAATCTGTGGT
GTACAGGTAGAACTCCACGCAGTGTATAGATTTGCCGTGACAGGCCAGCG
TTGTTGTTTTGATTCCAGATAAGGAGTCCAGGTAAAGGTTGTACCTGCTC
GGCCAATGATTCCTTCGTGCTTGCACGTCTGATAAGATTCAGTGTAGACA
ATTCGGGAGAAAGGGGCTGTTGTACATTGTGGAAAAAATCGAGTTCCAGG
CGGTAACGTGTGCATCAGGTTACTGCCGGACTGCAGTCGTTAAATAGCGA
GCTTGAAGACCCATACGAAATCAATGAAACAGTTTTATTATGTGCATAGC
ACTAGAAGCCACAAAGCGACAGCGCGGCACAGTAGGATAGTGCAGTACCA
GTGTGTATTGGGTACATCGCTTGCGCTGTAAGGGCTGAACGCTACCTGCA
CACACCCCCACATGCATACCATCCTTTGTGAAGGTAGGTCTGTTTCTCAT
ATCCTCCATCTATCCATCCGTCCCCGGTCTTGGACAACTGTTGTATGGCA
GTAGCAGGCTGAATAGGATTGGCGTTCTTGTACAATACATCAACATATAC
AATGCGCCCCTGTCAATGGTAAGGCTGTGAGCGAATAGTCGAAACGTAAA
CCTCTTGATACATGAAAAAAAAAGCAACAAGACCCCGAACAAATGACACG
TTTGCACCCCACAACGTAACAGGTACACAGTAAAACGCGCGTGATGTATC
AAATATTAAGTGATGGAATATGACACATCCCTTGAGGCTGAACACAATGC
CGCGGGGATATTTAGTTAACTTGCAATCCTGCACTGAGTAAGAGTCGAGC
TACGGTAGGGGGGACGGGGTAATTTCAGCCGACTTGTTTGAAGTGTTACG
CCGCTTTGCGGAGTAGCTAGGCGAACTATATATTTGCCCCCCTTGAACAG
TACAACAGAGCATTCCGATGCGTGCATGGTGCACCTTCGGGGATGCGTGA
GCGCGAACGCATGCCGTTGAATAGGTGTTGACTTCGGGTTGTTTAACCGC
TTTGCGAAGCGGCGCTCATTGGACAACCTCTTAGTGGTCATTCTCTAATT
TTGCTGATTAAAGTCAGCTCCATAACCTCAACATGGGAACAATGGAGTGT
ATTAATATGAGGTTCAGAGTTATAGTCTAATTGCCCCTTCCCCCTACCGT
AGCCCTTACTCAGAATCAGACGTTATCCAACTTTCGCCTTTTTTTTTTCT
TTTGCGTTTTATTCAATACGCTGATGCTCCGCTCTTCTCACGTTGTACAA
AAATTTCCTGGTCGCTCTTGCGCGCCGTTGCATGGCTTCCTCTCTGCCCC
CCCGCTACTGCACGTCTCCAGGGTCTGACGTTCTACTTCGTGATGCCTGT
CATGCTGGGTTTCATAGTGCAGAGCTACATGGCGGCAAAGCTGCCAGGCA
CGGAGGCGAATGCGCAGCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig750:446..3765+

>mRNA_H-paniculata_contig750.15476.1 ID=mRNA_H-paniculata_contig750.15476.1|Name=mRNA_H-paniculata_contig750.15476.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at H-paniculata_contig750:446..3765+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGAGGTTTCAAAAAGGTTGGAAATCGTGTTCCCTGCCGTGCTACGGGC
GTCTTTTGTCCTATTCTCCGTCATCTATTCGTACTCTGTCGTGGGCTTCG
CCATGTACTGTGCGACGCCGCTTGGGATCTATGAGCTGGACCCGATCGCA
CAGAGGTTTCAAAAAGGTTGGAAATCGTGTTCCCTGCCGTGCTACGGGCG
TCTTTTGTCCTATTCTCCGTCATCTATTCGTACTCTGTCGTGGGCTTCGC
CATGTACTGTGCGACGCCGCTTGGGATCTATGAGCTGGACCCGATCGCGT
TCGCTTTTTACCGACATGCGATTTCATTCGCCTCACTGCATGAGTCTATC
GCCGCTATGACAGACGTGGTCATGCTCAGCAACTGGCCCATCTTCATGGA
CGCAGCGGGTGATGTAGGCAACAGCGTTATCGCGAGGATATTTTTCTATT
CCTTTAAGGTTCGCTTTTTACCGACATGCGATTTCATTCGCCTCACTGCA
TGAGTCTATCGCCGCTATGACAGACGTGGTCATGCTCAGCAACTGGCCCA
TCTTCATGGACGCAGCGGGTGATGTAGGCAACAGCGTTATCGCGAGGATA
TTTTTCTATTCCTTTAAGGGTCTGACGTTCTACTTCGTGATGCCTGTCAT
GCTGGGTTTCATAGTGCAGAGCTACATGGCGGCAAAGCTGCCAGGCACGG
AGGCGAATGCGCAGCCCGGTCTGACGTTCTACTTCGTGATGCCTGTCATG
CTGGGTTTCATAGTGCAGAGCTACATGGCGGCAAAGCTGCCAGGCACGGA
GGCGAATGCGCAGCCC
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