mRNA_H-paniculata_contig74704.15455.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig74704.15455.1
Unique NamemRNA_H-paniculata_contig74704.15455.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig74704.15455.1 vs. uniprot
Match: E6ZER4_ECTSI (Ribosomal protein L5 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZER4_ECTSI)

HSP 1 Score: 219 bits (558), Expect = 8.300e-71
Identity = 107/141 (75.89%), Postives = 122/141 (86.52%), Query Frame = 1
Query:    1 GGNSTDENDVIASLAALKIISGQRPYFTQQKSTEQKVSGSREAVGCKITLRGSCMYFFFFKLLFYVLPCVKQFEGLRAPAHNNIYCFLLKDLFSFQELVPLFPYFEDLGSLQCQFHFTTKTKSEVVVLGQSLQLCFLSSEK 423
            GG+S +EN VI SLAALKII+GQ PYFTQQ+ T +K  GS+E+VG KITLRGS MY F +KLLF VLP +KQFEGLR PAH N+YCFLLKD+F+FQELVPLFPYFEDLGSLQCQFHFTTKTK EVV LG+SLQLCF+ +EK
Sbjct:   39 GGDSVNENYVIGSLAALKIITGQMPYFTQQRPTHKKNIGSKESVGGKITLRGSNMYAFLYKLLFDVLPRIKQFEGLRPPAHKNLYCFLLKDIFTFQELVPLFPYFEDLGSLQCQFHFTTKTKDEVVALGKSLQLCFIPNEK 179          
BLAST of mRNA_H-paniculata_contig74704.15455.1 vs. uniprot
Match: A0A8F0K073_9PHAE (Ribosomal protein L5 n=1 Tax=Pseudochorda nagaii TaxID=74379 RepID=A0A8F0K073_9PHAE)

HSP 1 Score: 216 bits (551), Expect = 1.140e-69
Identity = 103/141 (73.05%), Postives = 124/141 (87.94%), Query Frame = 1
Query:    1 GGNSTDENDVIASLAALKIISGQRPYFTQQKSTEQKVSGSREAVGCKITLRGSCMYFFFFKLLFYVLPCVKQFEGLRAPAHNNIYCFLLKDLFSFQELVPLFPYFEDLGSLQCQFHFTTKTKSEVVVLGQSLQLCFLSSEK 423
            GGNSTDE+ VIASLAAL II+GQ+PYFTQQK T+QK SG +E VG K+TLR S +Y F++KLLF+VLP ++QFEGLR PAH +IYCF+LKD+F+F+ELVPLFPYFE+LGSLQCQFHFTTK K+EV VLG+SLQLCF+  EK
Sbjct:   39 GGNSTDESYVIASLAALNIITGQKPYFTQQKLTQQKNSGPKEGVGGKVTLRRSVLYSFWYKLLFHVLPRIRQFEGLRVPAHESIYCFVLKDMFAFEELVPLFPYFEELGSLQCQFHFTTKNKTEVEVLGRSLQLCFIFDEK 179          
BLAST of mRNA_H-paniculata_contig74704.15455.1 vs. uniprot
Match: A0A3G5FPN3_9PHAE (Ribosomal protein L5 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPN3_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 1.950e-69
Identity = 105/141 (74.47%), Postives = 122/141 (86.52%), Query Frame = 1
Query:    1 GGNSTDENDVIASLAALKIISGQRPYFTQQKSTEQKVSGSREAVGCKITLRGSCMYFFFFKLLFYVLPCVKQFEGLRAPAHNNIYCFLLKDLFSFQELVPLFPYFEDLGSLQCQFHFTTKTKSEVVVLGQSLQLCFLSSEK 423
            GG+STDE  VI+SLAAL+I+SGQ+ Y TQ++  +QK + SRE VG K+TLR S MYFF +KLLF VLP ++QFEGL APAH NIYCF+LKD+FSFQELVPLF YFEDLGSLQCQFHFTTKTKSEV+VLG SLQLCF+SSEK
Sbjct:   39 GGSSTDEKYVISSLAALRILSGQKAYLTQEQLNQQKTNKSREGVGGKVTLRRSSMYFFLYKLLFDVLPHIRQFEGLGAPAHTNIYCFVLKDIFSFQELVPLFSYFEDLGSLQCQFHFTTKTKSEVIVLGNSLQLCFVSSEK 179          
BLAST of mRNA_H-paniculata_contig74704.15455.1 vs. uniprot
Match: A0A8F0JZJ0_AKKLU (Ribosomal protein L5 n=1 Tax=Akkesiphycus lubricus TaxID=3022 RepID=A0A8F0JZJ0_AKKLU)

HSP 1 Score: 215 bits (548), Expect = 3.250e-69
Identity = 102/141 (72.34%), Postives = 122/141 (86.52%), Query Frame = 1
Query:    1 GGNSTDENDVIASLAALKIISGQRPYFTQQKSTEQKVSGSREAVGCKITLRGSCMYFFFFKLLFYVLPCVKQFEGLRAPAHNNIYCFLLKDLFSFQELVPLFPYFEDLGSLQCQFHFTTKTKSEVVVLGQSLQLCFLSSEK 423
            GGNST+E+ VI+SLAAL II+GQ+PYFTQQK T+QK SG RE VG K++LRGSCMY F++KLLF+VLP ++QFEGLR PAH+NIYCF+L D+F+F+ELVPLFPYFE+L SLQCQFHFTTK KSEV  LG SLQLCF+   K
Sbjct:   39 GGNSTEESYVISSLAALSIITGQKPYFTQQKYTQQKNSGPREGVGGKVSLRGSCMYAFWYKLLFHVLPRIRQFEGLRIPAHDNIYCFVLNDMFAFEELVPLFPYFEELSSLQCQFHFTTKNKSEVEALGHSLQLCFVFDGK 179          
BLAST of mRNA_H-paniculata_contig74704.15455.1 vs. uniprot
Match: A0A0U1XDA4_9PHAE (Ribosomal protein L5 n=1 Tax=Colpomenia peregrina TaxID=27965 RepID=A0A0U1XDA4_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 6.470e-68
Identity = 102/141 (72.34%), Postives = 119/141 (84.40%), Query Frame = 1
Query:    1 GGNSTDENDVIASLAALKIISGQRPYFTQQKSTEQKVSGSREAVGCKITLRGSCMYFFFFKLLFYVLPCVKQFEGLRAPAHNNIYCFLLKDLFSFQELVPLFPYFEDLGSLQCQFHFTTKTKSEVVVLGQSLQLCFLSSEK 423
            GGNS++E  VIAS+AALKII+GQ PYFTQQK+T QK + ++E VG K+TLR   MYFF +KL F VLP ++QFEGLRAPAH  IYCF+LKD+FSFQELVPLFPYFEDL +LQCQFHFTTK K EV+ LG SLQLCF+SSEK
Sbjct:   39 GGNSSEEGYVIASIAALKIITGQTPYFTQQKATYQKSNSAKEGVGGKLTLRKHKMYFFLYKLFFEVLPQIRQFEGLRAPAHKTIYCFVLKDIFSFQELVPLFPYFEDLNNLQCQFHFTTKNKDEVLFLGNSLQLCFISSEK 179          
BLAST of mRNA_H-paniculata_contig74704.15455.1 vs. uniprot
Match: A0A8F0FCI1_9PHAE (Ribosomal protein L5 n=1 Tax=Cymathaere triplicata TaxID=309354 RepID=A0A8F0FCI1_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 7.620e-68
Identity = 100/141 (70.92%), Postives = 120/141 (85.11%), Query Frame = 1
Query:    1 GGNSTDENDVIASLAALKIISGQRPYFTQQKSTEQKVSGSREAVGCKITLRGSCMYFFFFKLLFYVLPCVKQFEGLRAPAHNNIYCFLLKDLFSFQELVPLFPYFEDLGSLQCQFHFTTKTKSEVVVLGQSLQLCFLSSEK 423
            GG+S DE  V+A L AL II GQ+PYFTQQK ++Q+ SGSRE VG K+TLRG+ MY FF+KLLF+VLP V+QFEGLRAPAH NIYCF+LKD+FSF+ELVPLFPYFE++GSLQCQFHFTT+ +SE+ VLG  LQ+CF SS K
Sbjct:   39 GGDSPDEGYVLACLGALTIIGGQKPYFTQQKPSKQRNSGSREGVGGKVTLRGAAMYLFFYKLLFHVLPRVRQFEGLRAPAHENIYCFVLKDIFSFEELVPLFPYFEEIGSLQCQFHFTTQGRSEINVLGHGLQVCFFSSGK 179          
BLAST of mRNA_H-paniculata_contig74704.15455.1 vs. uniprot
Match: A0A8F0K064_9PHAE (Ribosomal protein L5 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0K064_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 4.390e-67
Identity = 99/141 (70.21%), Postives = 121/141 (85.82%), Query Frame = 1
Query:    1 GGNSTDENDVIASLAALKIISGQRPYFTQQKSTEQKVSGSREAVGCKITLRGSCMYFFFFKLLFYVLPCVKQFEGLRAPAHNNIYCFLLKDLFSFQELVPLFPYFEDLGSLQCQFHFTTKTKSEVVVLGQSLQLCFLSSEK 423
            GG S+DEN VI+ L+AL II+GQ+PY TQQ+ T+Q+ +  RE VG K+TLRG  MY F++KLLF+VLP ++QFEGL+ PAH+NIYCFLLKD+FSF+ELVPLFPYFE+L SLQCQFHFTTK K+E V+LG SLQLCFLSSEK
Sbjct:   39 GGESSDENFVISCLSALNIITGQKPYLTQQQPTQQRNTSPREGVGGKVTLRGPNMYLFWYKLLFHVLPRIRQFEGLKEPAHDNIYCFLLKDMFSFEELVPLFPYFEELRSLQCQFHFTTKKKAEAVILGHSLQLCFLSSEK 179          
BLAST of mRNA_H-paniculata_contig74704.15455.1 vs. uniprot
Match: A0A0U1XC58_SCYLO (Ribosomal protein L5 n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=A0A0U1XC58_SCYLO)

HSP 1 Score: 208 bits (530), Expect = 1.520e-66
Identity = 102/141 (72.34%), Postives = 116/141 (82.27%), Query Frame = 1
Query:    1 GGNSTDENDVIASLAALKIISGQRPYFTQQKSTEQKVSGSREAVGCKITLRGSCMYFFFFKLLFYVLPCVKQFEGLRAPAHNNIYCFLLKDLFSFQELVPLFPYFEDLGSLQCQFHFTTKTKSEVVVLGQSLQLCFLSSEK 423
            GGNS++E+ V+ASLAALKII+GQ PYFTQQKST+Q  + SREAVG K+TLRG  MY F+ KLLF VLP +KQFEGL+ P H  IYCF+LKD+F+FQELVP FPYFEDL SLQCQFHFTT  K EVVVLG  LQLCFL  EK
Sbjct:   39 GGNSSEESYVLASLAALKIITGQTPYFTQQKSTQQNSNTSREAVGGKLTLRGQKMYAFYHKLLFDVLPQIKQFEGLKPPRHKKIYCFVLKDVFAFQELVPFFPYFEDLNSLQCQFHFTTDNKGEVVVLGNGLQLCFLKGEK 179          
BLAST of mRNA_H-paniculata_contig74704.15455.1 vs. uniprot
Match: A0A8F0K0J5_9PHAE (Ribosomal protein L5 n=8 Tax=Alariaceae TaxID=2887 RepID=A0A8F0K0J5_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 2.150e-66
Identity = 99/141 (70.21%), Postives = 119/141 (84.40%), Query Frame = 1
Query:    1 GGNSTDENDVIASLAALKIISGQRPYFTQQKSTEQKVSGSREAVGCKITLRGSCMYFFFFKLLFYVLPCVKQFEGLRAPAHNNIYCFLLKDLFSFQELVPLFPYFEDLGSLQCQFHFTTKTKSEVVVLGQSLQLCFLSSEK 423
            GG S+DEN V+A L AL II  Q+PYF Q+KS++Q+ SG RE +G KITLR + MY FF+KLLF+VLP V+QFEGLRAPAH+NIYCF+LKD+FSF+ELVPLFPYFE++GSLQCQFHFTTK K+E  VLG SLQ+CF SS K
Sbjct:   39 GGESSDENYVVACLGALNIIGSQKPYFIQKKSSQQRNSGPREGIGGKITLRRAQMYLFFYKLLFHVLPRVRQFEGLRAPAHDNIYCFILKDIFSFEELVPLFPYFEEVGSLQCQFHFTTKDKAETNVLGHSLQVCFFSSGK 179          
BLAST of mRNA_H-paniculata_contig74704.15455.1 vs. uniprot
Match: A0A2H4ZQZ6_9PHAE (Ribosomal protein L5 n=2 Tax=Endarachne binghamiae TaxID=698476 RepID=A0A2H4ZQZ6_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 2.150e-66
Identity = 101/141 (71.63%), Postives = 118/141 (83.69%), Query Frame = 1
Query:    1 GGNSTDENDVIASLAALKIISGQRPYFTQQKSTEQKVSGSREAVGCKITLRGSCMYFFFFKLLFYVLPCVKQFEGLRAPAHNNIYCFLLKDLFSFQELVPLFPYFEDLGSLQCQFHFTTKTKSEVVVLGQSLQLCFLSSEK 423
            GGNS++E+ V+AS AALK I+GQ PYFTQQK T+QK + + E VG KITLR   MY F FKLLF VLP ++QFEGLR P+H +++CFLLKD+FSF+ELVPLFPYFEDL SLQCQFHFTTK K+EVVVLG SLQLCFL SEK
Sbjct:   39 GGNSSEESYVLASFAALKTITGQIPYFTQQKPTQQKSNNTLEVVGVKITLRRENMYHFLFKLLFDVLPQIRQFEGLRTPSHKSVHCFLLKDMFSFEELVPLFPYFEDLNSLQCQFHFTTKNKAEVVVLGNSLQLCFLQSEK 179          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig74704.15455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
E6ZER4_ECTSI8.300e-7175.89Ribosomal protein L5 n=2 Tax=Ectocarpus siliculosu... [more]
A0A8F0K073_9PHAE1.140e-6973.05Ribosomal protein L5 n=1 Tax=Pseudochorda nagaii T... [more]
A0A3G5FPN3_9PHAE1.950e-6974.47Ribosomal protein L5 n=1 Tax=Cladosiphon okamuranu... [more]
A0A8F0JZJ0_AKKLU3.250e-6972.34Ribosomal protein L5 n=1 Tax=Akkesiphycus lubricus... [more]
A0A0U1XDA4_9PHAE6.470e-6872.34Ribosomal protein L5 n=1 Tax=Colpomenia peregrina ... [more]
A0A8F0FCI1_9PHAE7.620e-6870.92Ribosomal protein L5 n=1 Tax=Cymathaere triplicata... [more]
A0A8F0K064_9PHAE4.390e-6770.21Ribosomal protein L5 n=1 Tax=Chorda asiatica TaxID... [more]
A0A0U1XC58_SCYLO1.520e-6672.34Ribosomal protein L5 n=1 Tax=Scytosiphon lomentari... [more]
A0A8F0K0J5_9PHAE2.150e-6670.21Ribosomal protein L5 n=8 Tax=Alariaceae TaxID=2887... [more]
A0A2H4ZQZ6_9PHAE2.150e-6671.63Ribosomal protein L5 n=2 Tax=Endarachne binghamiae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig74704contigH-paniculata_contig74704:13..438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.8
Seed ortholog evalue5.8e-07
Seed eggNOG ortholog661478.OP10G_3781
Preferred namerplE
KEGG koko:K02931
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008097,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.tRNA binding
EggNOG OGsCOG0094@1,COG0094@2
COG Functional cat.J
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size426
Cds size426
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930916.8870926-CDS-H-paniculata_contig74704:12..4381622930916.8870926-CDS-H-paniculata_contig74704:12..438Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig74704 13..438 +
1691481509.3796067-CDS-H-paniculata_contig74704:12..4381691481509.3796067-CDS-H-paniculata_contig74704:12..438Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig74704 13..438 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig74704.15455.1prot_H-paniculata_contig74704.15455.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig74704 13..438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig74704.15455.1

>prot_H-paniculata_contig74704.15455.1 ID=prot_H-paniculata_contig74704.15455.1|Name=mRNA_H-paniculata_contig74704.15455.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=142bp
GGNSTDENDVIASLAALKIISGQRPYFTQQKSTEQKVSGSREAVGCKITL
RGSCMYFFFFKLLFYVLPCVKQFEGLRAPAHNNIYCFLLKDLFSFQELVP
LFPYFEDLGSLQCQFHFTTKTKSEVVVLGQSLQLCFLSSEK*
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mRNA from alignment at H-paniculata_contig74704:13..438+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig74704.15455.1 ID=mRNA_H-paniculata_contig74704.15455.1|Name=mRNA_H-paniculata_contig74704.15455.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=426bp|location=Sequence derived from alignment at H-paniculata_contig74704:13..438+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGGTAATAGTACTGACGAAAATGATGTTATTGCTTCTTTAGCCGCTTT AAAAATTATTTCAGGCCAAAGGCCTTATTTTACTCAACAAAAGTCGACTG AGCAAAAAGTTAGTGGGTCTAGAGAAGCTGTTGGTTGTAAAATAACCCTT AGAGGATCTTGTATGTATTTTTTTTTTTTTAAGCTTTTATTTTATGTATT ACCATGTGTAAAGCAATTTGAAGGTTTACGCGCTCCAGCGCATAATAATA TTTATTGCTTTCTTTTGAAAGATTTATTCTCTTTTCAAGAACTAGTACCC TTATTTCCTTATTTTGAAGATTTAGGTTCTCTTCAGTGTCAATTTCATTT CACAACAAAAACTAAATCTGAAGTTGTAGTTTTAGGTCAGAGTCTACAAC TTTGTTTTCTTTCTAGTGAAAAATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig74704:13..438+

>mRNA_H-paniculata_contig74704.15455.1 ID=mRNA_H-paniculata_contig74704.15455.1|Name=mRNA_H-paniculata_contig74704.15455.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=852bp|location=Sequence derived from alignment at H-paniculata_contig74704:13..438+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGGTAATAGTACTGACGAAAATGATGTTATTGCTTCTTTAGCCGCTTT
AAAAATTATTTCAGGCCAAAGGCCTTATTTTACTCAACAAAAGTCGACTG
AGCAAAAAGTTAGTGGGTCTAGAGAAGCTGTTGGTTGTAAAATAACCCTT
AGAGGATCTTGTATGTATTTTTTTTTTTTTAAGCTTTTATTTTATGTATT
ACCATGTGTAAAGCAATTTGAAGGTTTACGCGCTCCAGCGCATAATAATA
TTTATTGCTTTCTTTTGAAAGATTTATTCTCTTTTCAAGAACTAGTACCC
TTATTTCCTTATTTTGAAGATTTAGGTTCTCTTCAGTGTCAATTTCATTT
CACAACAAAAACTAAATCTGAAGTTGTAGTTTTAGGTCAGAGTCTACAAC
TTTGTTTTCTTTCTAGTGAAAAATAGGGTGGTAATAGTACTGACGAAAAT
GATGTTATTGCTTCTTTAGCCGCTTTAAAAATTATTTCAGGCCAAAGGCC
TTATTTTACTCAACAAAAGTCGACTGAGCAAAAAGTTAGTGGGTCTAGAG
AAGCTGTTGGTTGTAAAATAACCCTTAGAGGATCTTGTATGTATTTTTTT
TTTTTTAAGCTTTTATTTTATGTATTACCATGTGTAAAGCAATTTGAAGG
TTTACGCGCTCCAGCGCATAATAATATTTATTGCTTTCTTTTGAAAGATT
TATTCTCTTTTCAAGAACTAGTACCCTTATTTCCTTATTTTGAAGATTTA
GGTTCTCTTCAGTGTCAATTTCATTTCACAACAAAAACTAAATCTGAAGT
TGTAGTTTTAGGTCAGAGTCTACAACTTTGTTTTCTTTCTAGTGAAAAAT
AG
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