mRNA_H-paniculata_contig74685.15452.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig74685.15452.1 vs. uniprot
Match: UPI001FA2307D (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=UPI001FA2307D) HSP 1 Score: 65.1 bits (157), Expect = 3.480e-10 Identity = 32/98 (32.65%), Postives = 53/98 (54.08%), Query Frame = 1
Query: 1 EEVWVADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLRRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAI 294
+ VW+ DSGA+AHMT E + C+ +T+ N +++ + G GK+L+ G+ L V +VP L NLFS +++ + + K+ GA I
Sbjct: 272 DNVWILDSGASAHMTYRKEFFVELLECNQKSLTLGNKQSVEVAGIGKVLIKRCVNGQWENSELHDVLYVPNLRRNLFSEGVIMRKSYIIIKKDSGAFI 369
BLAST of mRNA_H-paniculata_contig74685.15452.1 vs. uniprot
Match: A0A329SN38_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SN38_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 3.090e-9 Identity = 34/96 (35.42%), Postives = 54/96 (56.25%), Query Frame = 1
Query: 10 WVADSGATAHMTPSNELMFDYETCS-NLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLRRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAI 294
W+ DSGATAHMTP +F+YE N+ VT+A+G+ + + G G + + D I + V H+PGLD L S+ + +G++V ++ I
Sbjct: 263 WLIDSGATAHMTPHRNDLFEYEDLEENIEVTIADGKKIRVVGTGSVRLMGIDGKRI---KMVEVLHIPGLDRRLLSVGKLAERGMSVEFQQNSCVI 355
BLAST of mRNA_H-paniculata_contig74685.15452.1 vs. uniprot
Match: A0A3M6VPY8_9STRA (CCHC-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPY8_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 4.250e-9 Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 1
Query: 10 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLRRVAHVPGLDTNLFSLQIVVNQGLTV 267
W+ DSGATAHMTP E +FDY+ +++ VT+A+G+ + + G G + + D I V H+PGLD L S+ + +GL V
Sbjct: 160 WLIDSGATAHMTPHREDLFDYKNLVTSIEVTIADGKKIRVVGTGSVRLTGIDGKRIRMLD---VLHIPGLDRRLLSVGKLAERGLNV 243
BLAST of mRNA_H-paniculata_contig74685.15452.1 vs. uniprot
Match: A0A2P4XNP3_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XNP3_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 6.090e-9 Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = 1
Query: 10 WVADSGATAHMTPSNELMFDYE-TCSNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLRRVAHVPGLDTNLFSLQIVVNQGLT 264
W+ DSGAT+HMTP E +FD E T S++ VT+A+G+ L + G G + + + + I + V ++PGLD L S+ + +GLT
Sbjct: 155 WLIDSGATSHMTPFREDLFDLEGTVSSIEVTIADGKKLRVAGQGTVRLTSLNGKHI---KMMEVLYIPGLDRRLLSVGKLAERGLT 237
BLAST of mRNA_H-paniculata_contig74685.15452.1 vs. uniprot
Match: A0A225UGS0_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGS0_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 1.010e-8 Identity = 32/96 (33.33%), Postives = 55/96 (57.29%), Query Frame = 1
Query: 10 WVADSGATAHMTPSNELMFDYETCS-NLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLRRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAI 294
W+ DSGATAHMTP + +F+Y S +++VT+A+G+ + + G G + + D I + V ++PGLD L S+ + +G++V + I
Sbjct: 245 WLIDSGATAHMTPHRDDLFEYSAMSKDMYVTIADGKKIRVAGTGSVRLTGIDAKSIR---MVEVLYIPGLDRRLLSVGKLAERGMSVEFQRNSCVI 337
BLAST of mRNA_H-paniculata_contig74685.15452.1 vs. uniprot
Match: A0A6A3X5U6_9STRA (CCHC-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3X5U6_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 1.470e-8 Identity = 33/96 (34.38%), Postives = 56/96 (58.33%), Query Frame = 1
Query: 10 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLRRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAI 294
W+ DSGATAHMTP +F+Y+ SN+ VT+A+G+ + + G G + + D I V ++PGLD L S++ + +G++V +++ I
Sbjct: 266 WLIDSGATAHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSVRRLAERGMSVEFQKKSCTI 358
BLAST of mRNA_H-paniculata_contig74685.15452.1 vs. uniprot
Match: A0A6A4BQ03_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4BQ03_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 2.110e-8 Identity = 33/96 (34.38%), Postives = 55/96 (57.29%), Query Frame = 1
Query: 10 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLRRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAI 294
W+ DSGATAHMTP +F+Y+ SN+ VT+A+G+ + + G G + + D I V ++PGLD L S+ + +G++V +++ I
Sbjct: 242 WLIDSGATAHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSVSRLAERGMSVEFQKKSCTI 334
BLAST of mRNA_H-paniculata_contig74685.15452.1 vs. uniprot
Match: A0A535F6U2_9CHLR (DDE-type integrase/transposase/recombinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535F6U2_9CHLR) HSP 1 Score: 58.9 bits (141), Expect = 5.440e-8 Identity = 29/87 (33.33%), Postives = 49/87 (56.32%), Query Frame = 1
Query: 10 WVADSGATAHMTPSNELMFDYETCSN-LFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLRRVAHVPGLDTNLFSLQIVVNQGLTV 267
W+ DSGA+ H TP ++ DY+T + V A G+ I G G + + + +G +L +V HVPG+D+NL S +++ +G +
Sbjct: 306 WILDSGASEHFTPYKHVLIDYKTLDKPVEVNTAKGKLFGI-GTGNVHLTVEGQGGFTPITLHKVLHVPGMDSNLLSSNVLLGKGFEI 391
BLAST of mRNA_H-paniculata_contig74685.15452.1 vs. uniprot
Match: A0A6A3IEW9_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3IEW9_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 7.140e-8 Identity = 32/96 (33.33%), Postives = 55/96 (57.29%), Query Frame = 1
Query: 10 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLRRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAI 294
W+ DSGAT HMTP +F+Y+ SN+ VT+A+G+ + + G G + + D I V ++PGLD L S+ + ++G++V +++ I
Sbjct: 266 WLIDSGATVHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSVSRLADRGVSVEFQKKSCTI 358
BLAST of mRNA_H-paniculata_contig74685.15452.1 vs. uniprot
Match: A0A6A3KTF1_9STRA (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KTF1_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 7.240e-8 Identity = 32/96 (33.33%), Postives = 55/96 (57.29%), Query Frame = 1
Query: 10 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLRRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAI 294
W+ DSGAT HMTP +F+Y+ SN+ VT+A+G+ + + G G + + D I V ++PGLD L S+ + ++G++V +++ I
Sbjct: 266 WLIDSGATVHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSVSRLADRGVSVEFQKKSCTI 358 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig74685.15452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig74685.15452.1 >prot_H-paniculata_contig74685.15452.1 ID=prot_H-paniculata_contig74685.15452.1|Name=mRNA_H-paniculata_contig74685.15452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=98bp EEVWVADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYGKMLVback to top mRNA from alignment at H-paniculata_contig74685:81..374+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig74685.15452.1 ID=mRNA_H-paniculata_contig74685.15452.1|Name=mRNA_H-paniculata_contig74685.15452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=294bp|location=Sequence derived from alignment at H-paniculata_contig74685:81..374+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig74685:81..374+ >mRNA_H-paniculata_contig74685.15452.1 ID=mRNA_H-paniculata_contig74685.15452.1|Name=mRNA_H-paniculata_contig74685.15452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at H-paniculata_contig74685:81..374+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |