mRNA_H-paniculata_contig74685.15452.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig74685.15452.1
Unique NamemRNA_H-paniculata_contig74685.15452.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig74685.15452.1 vs. uniprot
Match: UPI001FA2307D (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=UPI001FA2307D)

HSP 1 Score: 65.1 bits (157), Expect = 3.480e-10
Identity = 32/98 (32.65%), Postives = 53/98 (54.08%), Query Frame = 1
Query:    1 EEVWVADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLRRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAI 294
            + VW+ DSGA+AHMT   E   +   C+   +T+ N +++ + G GK+L+     G+     L  V +VP L  NLFS  +++ +   +  K+ GA I
Sbjct:  272 DNVWILDSGASAHMTYRKEFFVELLECNQKSLTLGNKQSVEVAGIGKVLIKRCVNGQWENSELHDVLYVPNLRRNLFSEGVIMRKSYIIIKKDSGAFI 369          
BLAST of mRNA_H-paniculata_contig74685.15452.1 vs. uniprot
Match: A0A329SN38_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SN38_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.090e-9
Identity = 34/96 (35.42%), Postives = 54/96 (56.25%), Query Frame = 1
Query:   10 WVADSGATAHMTPSNELMFDYETCS-NLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLRRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAI 294
            W+ DSGATAHMTP    +F+YE    N+ VT+A+G+ + + G G + +   D   I    +  V H+PGLD  L S+  +  +G++V  ++    I
Sbjct:  263 WLIDSGATAHMTPHRNDLFEYEDLEENIEVTIADGKKIRVVGTGSVRLMGIDGKRI---KMVEVLHIPGLDRRLLSVGKLAERGMSVEFQQNSCVI 355          
BLAST of mRNA_H-paniculata_contig74685.15452.1 vs. uniprot
Match: A0A3M6VPY8_9STRA (CCHC-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPY8_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 4.250e-9
Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 1
Query:   10 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLRRVAHVPGLDTNLFSLQIVVNQGLTV 267
            W+ DSGATAHMTP  E +FDY+   +++ VT+A+G+ + + G G + +   D   I       V H+PGLD  L S+  +  +GL V
Sbjct:  160 WLIDSGATAHMTPHREDLFDYKNLVTSIEVTIADGKKIRVVGTGSVRLTGIDGKRIRMLD---VLHIPGLDRRLLSVGKLAERGLNV 243          
BLAST of mRNA_H-paniculata_contig74685.15452.1 vs. uniprot
Match: A0A2P4XNP3_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XNP3_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 6.090e-9
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = 1
Query:   10 WVADSGATAHMTPSNELMFDYE-TCSNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLRRVAHVPGLDTNLFSLQIVVNQGLT 264
            W+ DSGAT+HMTP  E +FD E T S++ VT+A+G+ L + G G + + + +   I    +  V ++PGLD  L S+  +  +GLT
Sbjct:  155 WLIDSGATSHMTPFREDLFDLEGTVSSIEVTIADGKKLRVAGQGTVRLTSLNGKHI---KMMEVLYIPGLDRRLLSVGKLAERGLT 237          
BLAST of mRNA_H-paniculata_contig74685.15452.1 vs. uniprot
Match: A0A225UGS0_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGS0_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.010e-8
Identity = 32/96 (33.33%), Postives = 55/96 (57.29%), Query Frame = 1
Query:   10 WVADSGATAHMTPSNELMFDYETCS-NLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLRRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAI 294
            W+ DSGATAHMTP  + +F+Y   S +++VT+A+G+ + + G G + +   D   I    +  V ++PGLD  L S+  +  +G++V  +     I
Sbjct:  245 WLIDSGATAHMTPHRDDLFEYSAMSKDMYVTIADGKKIRVAGTGSVRLTGIDAKSIR---MVEVLYIPGLDRRLLSVGKLAERGMSVEFQRNSCVI 337          
BLAST of mRNA_H-paniculata_contig74685.15452.1 vs. uniprot
Match: A0A6A3X5U6_9STRA (CCHC-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3X5U6_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.470e-8
Identity = 33/96 (34.38%), Postives = 56/96 (58.33%), Query Frame = 1
Query:   10 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLRRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAI 294
            W+ DSGATAHMTP    +F+Y+   SN+ VT+A+G+ + + G G + +   D   I       V ++PGLD  L S++ +  +G++V  +++   I
Sbjct:  266 WLIDSGATAHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSVRRLAERGMSVEFQKKSCTI 358          
BLAST of mRNA_H-paniculata_contig74685.15452.1 vs. uniprot
Match: A0A6A4BQ03_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4BQ03_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.110e-8
Identity = 33/96 (34.38%), Postives = 55/96 (57.29%), Query Frame = 1
Query:   10 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLRRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAI 294
            W+ DSGATAHMTP    +F+Y+   SN+ VT+A+G+ + + G G + +   D   I       V ++PGLD  L S+  +  +G++V  +++   I
Sbjct:  242 WLIDSGATAHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSVSRLAERGMSVEFQKKSCTI 334          
BLAST of mRNA_H-paniculata_contig74685.15452.1 vs. uniprot
Match: A0A535F6U2_9CHLR (DDE-type integrase/transposase/recombinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535F6U2_9CHLR)

HSP 1 Score: 58.9 bits (141), Expect = 5.440e-8
Identity = 29/87 (33.33%), Postives = 49/87 (56.32%), Query Frame = 1
Query:   10 WVADSGATAHMTPSNELMFDYETCSN-LFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLRRVAHVPGLDTNLFSLQIVVNQGLTV 267
            W+ DSGA+ H TP   ++ DY+T    + V  A G+   I G G + +  + +G     +L +V HVPG+D+NL S  +++ +G  +
Sbjct:  306 WILDSGASEHFTPYKHVLIDYKTLDKPVEVNTAKGKLFGI-GTGNVHLTVEGQGGFTPITLHKVLHVPGMDSNLLSSNVLLGKGFEI 391          
BLAST of mRNA_H-paniculata_contig74685.15452.1 vs. uniprot
Match: A0A6A3IEW9_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3IEW9_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 7.140e-8
Identity = 32/96 (33.33%), Postives = 55/96 (57.29%), Query Frame = 1
Query:   10 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLRRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAI 294
            W+ DSGAT HMTP    +F+Y+   SN+ VT+A+G+ + + G G + +   D   I       V ++PGLD  L S+  + ++G++V  +++   I
Sbjct:  266 WLIDSGATVHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSVSRLADRGVSVEFQKKSCTI 358          
BLAST of mRNA_H-paniculata_contig74685.15452.1 vs. uniprot
Match: A0A6A3KTF1_9STRA (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KTF1_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 7.240e-8
Identity = 32/96 (33.33%), Postives = 55/96 (57.29%), Query Frame = 1
Query:   10 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLRRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAI 294
            W+ DSGAT HMTP    +F+Y+   SN+ VT+A+G+ + + G G + +   D   I       V ++PGLD  L S+  + ++G++V  +++   I
Sbjct:  266 WLIDSGATVHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSVSRLADRGVSVEFQKKSCTI 358          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig74685.15452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001FA2307D3.480e-1032.65Uncharacterized protein n=1 Tax=Spodoptera exigua ... [more]
A0A329SN38_9STRA3.090e-935.42Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A3M6VPY8_9STRA4.250e-939.08CCHC-type domain-containing protein n=1 Tax=Perono... [more]
A0A2P4XNP3_9STRA6.090e-939.53Integrase catalytic core protein n=1 Tax=Phytophth... [more]
A0A225UGS0_9STRA1.010e-833.33Integrase, catalytic core protein (Fragment) n=1 T... [more]
A0A6A3X5U6_9STRA1.470e-834.38CCHC-type domain-containing protein n=5 Tax=Phytop... [more]
A0A6A4BQ03_9STRA2.110e-834.38Retrovirus-related Pol polyprotein from transposon... [more]
A0A535F6U2_9CHLR5.440e-833.33DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A6A3IEW9_9STRA7.140e-833.33Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]
A0A6A3KTF1_9STRA7.240e-833.33Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig74685contigH-paniculata_contig74685:81..374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue6.6e-10
Seed eggNOG ortholog67593.Physo138220
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930916.3771565-CDS-H-paniculata_contig74685:80..3741622930916.3771565-CDS-H-paniculata_contig74685:80..374Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig74685 81..374 +
1691481509.1404238-CDS-H-paniculata_contig74685:80..3741691481509.1404238-CDS-H-paniculata_contig74685:80..374Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig74685 81..374 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig74685.15452.1prot_H-paniculata_contig74685.15452.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig74685 81..374 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig74685.15452.1

>prot_H-paniculata_contig74685.15452.1 ID=prot_H-paniculata_contig74685.15452.1|Name=mRNA_H-paniculata_contig74685.15452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=98bp
EEVWVADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYGKMLV
WTKDRGEIHKFSLRRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAI
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mRNA from alignment at H-paniculata_contig74685:81..374+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig74685.15452.1 ID=mRNA_H-paniculata_contig74685.15452.1|Name=mRNA_H-paniculata_contig74685.15452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=294bp|location=Sequence derived from alignment at H-paniculata_contig74685:81..374+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGAGGTTTGGGTGGCCGACAGTGGGGCCACGGCCCACATGACTCCGTC TAACGAATTAATGTTTGATTACGAAACCTGCAGTAATTTGTTTGTGACGG TGGCTAACGGCGAAACACTTCCGATTGAGGGATATGGTAAGATGTTGGTA TGGACGAAGGATCGGGGCGAGATACATAAATTCAGCCTGCGTCGTGTAGC GCATGTTCCGGGCCTGGACACAAATTTGTTTTCCCTACAGATTGTTGTGA ACCAGGGACTTACTGTCTGTTTGAAGGAGGAGGGTGCAGCAATT
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Coding sequence (CDS) from alignment at H-paniculata_contig74685:81..374+

>mRNA_H-paniculata_contig74685.15452.1 ID=mRNA_H-paniculata_contig74685.15452.1|Name=mRNA_H-paniculata_contig74685.15452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at H-paniculata_contig74685:81..374+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGAGGTTTGGGTGGCCGACAGTGGGGCCACGGCCCACATGACTCCGTC
TAACGAATTAATGTTTGATTACGAAACCTGCAGTAATTTGTTTGTGACGG
TGGCTAACGGCGAAACACTTCCGATTGAGGGATATGGTAAGATGTTGGTA
TGGACGAAGGATCGGGGCGAGATACATAAATTCAGCCTGCGTCGTGTAGC
GCATGTTCCGGGCCTGGACACAAATTTGTTTTCCCTACAGATTGTTGTGA
ACCAGGGACTTACTGTCTGTTTGAAGGAGGAGGGTGCAGCAATTGAGGAG
GTTTGGGTGGCCGACAGTGGGGCCACGGCCCACATGACTCCGTCTAACGA
ATTAATGTTTGATTACGAAACCTGCAGTAATTTGTTTGTGACGGTGGCTA
ACGGCGAAACACTTCCGATTGAGGGATATGGTAAGATGTTGGTATGGACG
AAGGATCGGGGCGAGATACATAAATTCAGCCTGCGTCGTGTAGCGCATGT
TCCGGGCCTGGACACAAATTTGTTTTCCCTACAGATTGTTGTGAACCAGG
GACTTACTGTCTGTTTGAAGGAGGAGGGTGCAGCAATT
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