mRNA_H-paniculata_contig74520.15432.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig74520.15432.1
Unique NamemRNA_H-paniculata_contig74520.15432.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig74520.15432.1 vs. uniprot
Match: A0A0U1XDT6_9PHAE (Ribosomal protein S13 n=2 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A0U1XDT6_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 4.280e-46
Identity = 74/88 (84.09%), Postives = 80/88 (90.91%), Query Frame = 1
Query:    1 MPYIIGTSIPEDKVLVQSMGHVYGLGLTQSINLCKKAGFGSDSRGSDVGFFKGQLLEGLAEAAPFLLGADLRRFQNDKIRRLCVLSTY 264
            MPYIIGTSIPEDKVLVQS+ H+YGLGL+QS NLCKKAGFGSDSRG DV FFKG+++E LAEA P  LGADLRRFQNDKIRRLCVLSTY
Sbjct:    1 MPYIIGTSIPEDKVLVQSIAHIYGLGLSQSKNLCKKAGFGSDSRGRDVSFFKGKMIENLAEATPLPLGADLRRFQNDKIRRLCVLSTY 88          
BLAST of mRNA_H-paniculata_contig74520.15432.1 vs. uniprot
Match: A0A3G5FPN8_9PHAE (Ribosomal protein S13 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPN8_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 1.230e-45
Identity = 75/88 (85.23%), Postives = 80/88 (90.91%), Query Frame = 1
Query:    1 MPYIIGTSIPEDKVLVQSMGHVYGLGLTQSINLCKKAGFGSDSRGSDVGFFKGQLLEGLAEAAPFLLGADLRRFQNDKIRRLCVLSTY 264
            MPYIIGTSIPEDKVLVQS+ HVYGLGLTQS+NLCKKAGFGSDSRGSDV F KGQ+LE LAE A   LGADLRRFQN+KIRRLC+LSTY
Sbjct:    1 MPYIIGTSIPEDKVLVQSLSHVYGLGLTQSVNLCKKAGFGSDSRGSDVSFSKGQILEKLAEGASIPLGADLRRFQNNKIRRLCLLSTY 88          
BLAST of mRNA_H-paniculata_contig74520.15432.1 vs. uniprot
Match: Q94Z03_PYLLI (Ribosomal protein S13 n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=Q94Z03_PYLLI)

HSP 1 Score: 141 bits (356), Expect = 7.910e-42
Identity = 69/88 (78.41%), Postives = 77/88 (87.50%), Query Frame = 1
Query:    1 MPYIIGTSIPEDKVLVQSMGHVYGLGLTQSINLCKKAGFGSDSRGSDVGFFKGQLLEGLAEAAPFLLGADLRRFQNDKIRRLCVLSTY 264
            MPYI+GTSIPEDKVLVQS+GH+YGLGLTQSI+LCKKAGFGSDSRG  + F KG+LL  LAEA P  LGADLRRF +DKI+RLC LSTY
Sbjct:    1 MPYIVGTSIPEDKVLVQSVGHIYGLGLTQSISLCKKAGFGSDSRGRHISFSKGKLLGNLAEATPLPLGADLRRFTHDKIKRLCSLSTY 88          
BLAST of mRNA_H-paniculata_contig74520.15432.1 vs. uniprot
Match: A0A8F0FDF8_9PHAE (Ribosomal protein S13 n=1 Tax=Pseudochorda nagaii TaxID=74379 RepID=A0A8F0FDF8_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 7.910e-42
Identity = 70/88 (79.55%), Postives = 78/88 (88.64%), Query Frame = 1
Query:    1 MPYIIGTSIPEDKVLVQSMGHVYGLGLTQSINLCKKAGFGSDSRGSDVGFFKGQLLEGLAEAAPFLLGADLRRFQNDKIRRLCVLSTY 264
            MP+IIGTSIPEDK+LVQS+ H+YGLGL+QS  LCKKAGFGSDSRGS V F KG++LE LAEA P  LGADLRRFQNDKIRRLCVLS+Y
Sbjct:    1 MPFIIGTSIPEDKILVQSVSHIYGLGLSQSKVLCKKAGFGSDSRGSHVTFSKGRILENLAEATPLPLGADLRRFQNDKIRRLCVLSSY 88          
BLAST of mRNA_H-paniculata_contig74520.15432.1 vs. uniprot
Match: A0A7U1G3I7_9PHAE (Ribosomal protein S13 n=8 Tax=Laminariales TaxID=2886 RepID=A0A7U1G3I7_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 6.490e-41
Identity = 70/88 (79.55%), Postives = 77/88 (87.50%), Query Frame = 1
Query:    1 MPYIIGTSIPEDKVLVQSMGHVYGLGLTQSINLCKKAGFGSDSRGSDVGFFKGQLLEGLAEAAPFLLGADLRRFQNDKIRRLCVLSTY 264
            MP+IIGTSIPEDKVLVQS+ H+YG+GL+QS  LCKKAGFGSDSRGS V F KG+ LE LAEA P  LGADLRRF+NDKIRRLCVLSTY
Sbjct:    1 MPFIIGTSIPEDKVLVQSVSHIYGIGLSQSKILCKKAGFGSDSRGSHVTFTKGKNLENLAEATPLPLGADLRRFKNDKIRRLCVLSTY 88          
BLAST of mRNA_H-paniculata_contig74520.15432.1 vs. uniprot
Match: E6ZES0_ECTSI (Ribosomal protein S13 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZES0_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 9.210e-41
Identity = 67/88 (76.14%), Postives = 76/88 (86.36%), Query Frame = 1
Query:    1 MPYIIGTSIPEDKVLVQSMGHVYGLGLTQSINLCKKAGFGSDSRGSDVGFFKGQLLEGLAEAAPFLLGADLRRFQNDKIRRLCVLSTY 264
            MPYIIGTSIPEDKVLVQS+ H+YGLG +QS NLCKKAGFGSDSRGSD+ F KG++LE  AEA    LG+DLRRFQN+KIRRLC +STY
Sbjct:    1 MPYIIGTSIPEDKVLVQSLSHIYGLGSSQSKNLCKKAGFGSDSRGSDITFLKGKILENFAEATSLPLGSDLRRFQNNKIRRLCSISTY 88          
BLAST of mRNA_H-paniculata_contig74520.15432.1 vs. uniprot
Match: D0IPU7_SACAN (Ribosomal protein S13 n=45 Tax=Laminariales TaxID=2886 RepID=D0IPU7_SACAN)

HSP 1 Score: 138 bits (347), Expect = 1.860e-40
Identity = 69/88 (78.41%), Postives = 76/88 (86.36%), Query Frame = 1
Query:    1 MPYIIGTSIPEDKVLVQSMGHVYGLGLTQSINLCKKAGFGSDSRGSDVGFFKGQLLEGLAEAAPFLLGADLRRFQNDKIRRLCVLSTY 264
            MP+IIGT IPEDKVLVQS+ H+YG+GL+QS  LCKKAGFGSDSRGS V F KG+ LE LAEA P  LGADLRRF+NDKIRRLCVLSTY
Sbjct:    1 MPFIIGTPIPEDKVLVQSISHIYGIGLSQSKILCKKAGFGSDSRGSHVTFLKGRNLENLAEATPLPLGADLRRFKNDKIRRLCVLSTY 88          
BLAST of mRNA_H-paniculata_contig74520.15432.1 vs. uniprot
Match: Q2TUF4_9PHAE (Ribosomal protein S13 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUF4_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 2.160e-39
Identity = 67/88 (76.14%), Postives = 76/88 (86.36%), Query Frame = 1
Query:    1 MPYIIGTSIPEDKVLVQSMGHVYGLGLTQSINLCKKAGFGSDSRGSDVGFFKGQLLEGLAEAAPFLLGADLRRFQNDKIRRLCVLSTY 264
            MP+IIGTSIPEDKVLVQS+ H+YG+GL+QS  LCKKAGFGSDSRG +V F KG+ LE LAEA P  LG DLRRFQNDKIRRLC++STY
Sbjct:    1 MPFIIGTSIPEDKVLVQSVAHIYGIGLSQSKILCKKAGFGSDSRGRNVTFSKGKNLENLAEAIPLPLGPDLRRFQNDKIRRLCLISTY 88          
BLAST of mRNA_H-paniculata_contig74520.15432.1 vs. uniprot
Match: A0A8F0FC85_9PHAE (Ribosomal protein S13 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0FC85_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 3.070e-39
Identity = 68/88 (77.27%), Postives = 74/88 (84.09%), Query Frame = 1
Query:    1 MPYIIGTSIPEDKVLVQSMGHVYGLGLTQSINLCKKAGFGSDSRGSDVGFFKGQLLEGLAEAAPFLLGADLRRFQNDKIRRLCVLSTY 264
            MP+IIGTSIPEDKVLVQS+ H+YG+GL+QS  LCKKAGFGSDSRG  V F KG+ LE LAE  P  LGADLRRFQNDKIRRLCVLS Y
Sbjct:    1 MPFIIGTSIPEDKVLVQSIAHIYGIGLSQSKILCKKAGFGSDSRGIHVTFSKGKNLENLAEDTPLALGADLRRFQNDKIRRLCVLSAY 88          
BLAST of mRNA_H-paniculata_contig74520.15432.1 vs. uniprot
Match: A0A0U1XCC6_SCYLO (Ribosomal protein S13 n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=A0A0U1XCC6_SCYLO)

HSP 1 Score: 135 bits (339), Expect = 3.270e-39
Identity = 67/88 (76.14%), Postives = 73/88 (82.95%), Query Frame = 1
Query:    1 MPYIIGTSIPEDKVLVQSMGHVYGLGLTQSINLCKKAGFGSDSRGSDVGFFKGQLLEGLAEAAPFLLGADLRRFQNDKIRRLCVLSTY 264
            MPYIIGT IPE+KVLVQS+ H+YG+GL QS  LCKKAGFGSDSRG DV F KG++LE LAE     LGADLRRFQNDKIRRLC LSTY
Sbjct:    1 MPYIIGTPIPEEKVLVQSLSHIYGIGLYQSKILCKKAGFGSDSRGKDVSFPKGKILENLAEGTSLPLGADLRRFQNDKIRRLCALSTY 88          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig74520.15432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A0U1XDT6_9PHAE4.280e-4684.09Ribosomal protein S13 n=2 Tax=Scytosiphonaceae Tax... [more]
A0A3G5FPN8_9PHAE1.230e-4585.23Ribosomal protein S13 n=1 Tax=Cladosiphon okamuran... [more]
Q94Z03_PYLLI7.910e-4278.41Ribosomal protein S13 n=1 Tax=Pylaiella littoralis... [more]
A0A8F0FDF8_9PHAE7.910e-4279.55Ribosomal protein S13 n=1 Tax=Pseudochorda nagaii ... [more]
A0A7U1G3I7_9PHAE6.490e-4179.55Ribosomal protein S13 n=8 Tax=Laminariales TaxID=2... [more]
E6ZES0_ECTSI9.210e-4176.14Ribosomal protein S13 n=2 Tax=Ectocarpus siliculos... [more]
D0IPU7_SACAN1.860e-4078.41Ribosomal protein S13 n=45 Tax=Laminariales TaxID=... [more]
Q2TUF4_9PHAE2.160e-3976.14Ribosomal protein S13 n=2 Tax=Desmarestia TaxID=31... [more]
A0A8F0FC85_9PHAE3.070e-3977.27Ribosomal protein S13 n=1 Tax=Chorda asiatica TaxI... [more]
A0A0U1XCC6_SCYLO3.270e-3976.14Ribosomal protein S13 n=1 Tax=Scytosiphon lomentar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig74520contigH-paniculata_contig74520:1..264 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size264
Cds size264
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930913.6175685-CDS-H-paniculata_contig74520:0..2641622930913.6175685-CDS-H-paniculata_contig74520:0..264Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig74520 1..264 -
1691481508.1158497-CDS-H-paniculata_contig74520:0..2641691481508.1158497-CDS-H-paniculata_contig74520:0..264Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig74520 1..264 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig74520.15432.1prot_H-paniculata_contig74520.15432.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig74520 1..264 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig74520.15432.1

>prot_H-paniculata_contig74520.15432.1 ID=prot_H-paniculata_contig74520.15432.1|Name=mRNA_H-paniculata_contig74520.15432.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp
MPYIIGTSIPEDKVLVQSMGHVYGLGLTQSINLCKKAGFGSDSRGSDVGF
FKGQLLEGLAEAAPFLLGADLRRFQNDKIRRLCVLSTY
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mRNA from alignment at H-paniculata_contig74520:1..264-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig74520.15432.1 ID=mRNA_H-paniculata_contig74520.15432.1|Name=mRNA_H-paniculata_contig74520.15432.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=264bp|location=Sequence derived from alignment at H-paniculata_contig74520:1..264- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTTATATTATCGGTACCTCTATTCCAGAAGATAAAGTTTTGGTGCA GTCTATGGGTCATGTTTATGGCCTTGGATTAACTCAGTCTATCAATTTAT GCAAAAAAGCCGGGTTTGGTTCAGACTCCCGGGGTAGCGATGTTGGTTTC TTTAAGGGACAACTTTTAGAGGGATTAGCAGAAGCCGCTCCTTTTCTTTT AGGTGCTGATCTTCGCCGCTTCCAAAATGATAAAATTCGTCGTTTGTGTG TTCTTTCCACTTAT
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Coding sequence (CDS) from alignment at H-paniculata_contig74520:1..264-

>mRNA_H-paniculata_contig74520.15432.1 ID=mRNA_H-paniculata_contig74520.15432.1|Name=mRNA_H-paniculata_contig74520.15432.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig74520:1..264- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTTATATTATCGGTACCTCTATTCCAGAAGATAAAGTTTTGGTGCA
GTCTATGGGTCATGTTTATGGCCTTGGATTAACTCAGTCTATCAATTTAT
GCAAAAAAGCCGGGTTTGGTTCAGACTCCCGGGGTAGCGATGTTGGTTTC
TTTAAGGGACAACTTTTAGAGGGATTAGCAGAAGCCGCTCCTTTTCTTTT
AGGTGCTGATCTTCGCCGCTTCCAAAATGATAAAATTCGTCGTTTGTGTG
TTCTTTCCACTTATATGCCTTATATTATCGGTACCTCTATTCCAGAAGAT
AAAGTTTTGGTGCAGTCTATGGGTCATGTTTATGGCCTTGGATTAACTCA
GTCTATCAATTTATGCAAAAAAGCCGGGTTTGGTTCAGACTCCCGGGGTA
GCGATGTTGGTTTCTTTAAGGGACAACTTTTAGAGGGATTAGCAGAAGCC
GCTCCTTTTCTTTTAGGTGCTGATCTTCGCCGCTTCCAAAATGATAAAAT
TCGTCGTTTGTGTGTTCTTTCCACTTAT
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