mRNA_H-paniculata_contig7438.15418.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7438.15418.1
Unique NamemRNA_H-paniculata_contig7438.15418.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7438.15418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7438contigH-paniculata_contig7438:3092..3655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size564
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930911.6323874-CDS-H-paniculata_contig7438:3091..33941622930911.6323874-CDS-H-paniculata_contig7438:3091..3394Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7438 3092..3394 +
1691481507.343196-CDS-H-paniculata_contig7438:3091..33941691481507.343196-CDS-H-paniculata_contig7438:3091..3394Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7438 3092..3394 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930911.6514578-UTR-H-paniculata_contig7438:3394..36551622930911.6514578-UTR-H-paniculata_contig7438:3394..3655Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7438 3395..3655 +
1691481507.3562624-UTR-H-paniculata_contig7438:3394..36551691481507.3562624-UTR-H-paniculata_contig7438:3394..3655Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7438 3395..3655 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7438.15418.1prot_H-paniculata_contig7438.15418.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7438 3092..3394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7438.15418.1

>prot_H-paniculata_contig7438.15418.1 ID=prot_H-paniculata_contig7438.15418.1|Name=mRNA_H-paniculata_contig7438.15418.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
AQTGGGGVRFLAGHLNIAGKKREGCNWVHSRLFCGQNVGEAFGRRNKTGS
QKAGLPYVLTIWELTLCRSPFTTSTPSIPSWSVGKISPLSPDMGKNKGGL
*
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mRNA from alignment at H-paniculata_contig7438:3092..3655+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7438.15418.1 ID=mRNA_H-paniculata_contig7438.15418.1|Name=mRNA_H-paniculata_contig7438.15418.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=564bp|location=Sequence derived from alignment at H-paniculata_contig7438:3092..3655+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCACAAACAGGAGGGGGGGGGGTTAGGTTCCTTGCTGGGCATCTAAATAT
TGCTGGAAAGAAACGGGAGGGGTGCAATTGGGTACATAGTAGGCTCTTTT
GTGGACAAAATGTCGGCGAGGCATTTGGAAGGCGAAATAAAACTGGAAGT
CAAAAAGCAGGACTGCCATATGTTCTTACAATCTGGGAGCTAACTTTGTG
TCGCTCCCCCTTTACAACATCTACTCCTTCTATTCCATCCTGGAGTGTAG
GGAAAATTTCCCCATTATCACCTGACATGGGAAAAAATAAGGGTGGATTA
TGACCCTCATTTGCTTGATTTACGGCACGACCAGTCGAACTGTTTGTTGG
CAGAACATACATCTGTAAGGTGGTTTGGTAGTATACATCGACATGTTGTT
AGCAGAGCGCTCATGTGTTTATTGGTAGAGCTCACGTCTGACTGCCTAAC
TGGGTTGGCATATAGCATGTGTGTGCCTTGGCAAGGCATGTACCCCTGTG
TGCTATGGTTTGCTGTGTGTGTTGGCAGGGCGCGCGTCTACCCTAAACTG
CGTTGTTGGCAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig7438:3092..3655+

>mRNA_H-paniculata_contig7438.15418.1 ID=mRNA_H-paniculata_contig7438.15418.1|Name=mRNA_H-paniculata_contig7438.15418.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig7438:3092..3655+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCACAAACAGGAGGGGGGGGGGTTAGGTTCCTTGCTGGGCATCTAAATAT
TGCTGGAAAGAAACGGGAGGGGTGCAATTGGGTACATAGTAGGCTCTTTT
GTGGACAAAATGTCGGCGAGGCATTTGGAAGGCGAAATAAAACTGGAAGT
CAAAAAGCAGGACTGCCATATGTTCTTACAATCTGGGAGCTAACTTTGTG
TCGCTCCCCCTTTACAACATCTACTCCTTCTATTCCATCCTGGAGTGTAG
GGAAAATTTCCCCATTATCACCTGACATGGGAAAAAATAAGGGTGGATTA
TGAGCACAAACAGGAGGGGGGGGGGTTAGGTTCCTTGCTGGGCATCTAAA
TATTGCTGGAAAGAAACGGGAGGGGTGCAATTGGGTACATAGTAGGCTCT
TTTGTGGACAAAATGTCGGCGAGGCATTTGGAAGGCGAAATAAAACTGGA
AGTCAAAAAGCAGGACTGCCATATGTTCTTACAATCTGGGAGCTAACTTT
GTGTCGCTCCCCCTTTACAACATCTACTCCTTCTATTCCATCCTGGAGTG
TAGGGAAAATTTCCCCATTATCACCTGACATGGGAAAAAATAAGGGTGGA
TTATGA
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