mRNA_H-paniculata_contig7421.15407.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7421.15407.1
Unique NamemRNA_H-paniculata_contig7421.15407.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7421.15407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7421contigH-paniculata_contig7421:8503..8975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size473
Cds size339
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930910.0338566-UTR-H-paniculata_contig7421:8502..86361622930910.0338566-UTR-H-paniculata_contig7421:8502..8636Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7421 8503..8636 +
1691481506.6250246-UTR-H-paniculata_contig7421:8502..86361691481506.6250246-UTR-H-paniculata_contig7421:8502..8636Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7421 8503..8636 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930910.0573404-CDS-H-paniculata_contig7421:8636..89751622930910.0573404-CDS-H-paniculata_contig7421:8636..8975Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7421 8637..8975 +
1691481506.6381521-CDS-H-paniculata_contig7421:8636..89751691481506.6381521-CDS-H-paniculata_contig7421:8636..8975Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7421 8637..8975 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7421.15407.1prot_H-paniculata_contig7421.15407.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7421 8637..8975 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7421.15407.1

>prot_H-paniculata_contig7421.15407.1 ID=prot_H-paniculata_contig7421.15407.1|Name=mRNA_H-paniculata_contig7421.15407.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
MNGQSSNEFFFFCGVEAIFCDFTVNGCRIMHHGPRLLKEYGVGVQELFVS
NSFFIRGIGLRDMGKTRRISVTVLLGTLVFLISQSRVPRLKNVEQFLITD
AILFHEVLSRFA*
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mRNA from alignment at H-paniculata_contig7421:8503..8975+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7421.15407.1 ID=mRNA_H-paniculata_contig7421.15407.1|Name=mRNA_H-paniculata_contig7421.15407.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=473bp|location=Sequence derived from alignment at H-paniculata_contig7421:8503..8975+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTAGCCTAGACTTGCTTCTTTTTGTGCGAAATGGATTACACTAGCTTAG
ATTGGCGACGGGGAACAGCGACTTGTACCTGCTTGCTTGGAGAGCTTGTT
GGACAACTTTATCGTGCGGAGGTTTTGTTCGTTCATGAATGGGCAATCCT
CAAATGAGTTTTTTTTTTTTTGTGGGGTCGAAGCGATTTTTTGTGATTTT
ACCGTCAACGGTTGCCGAATCATGCATCACGGCCCAAGACTTCTGAAAGA
GTATGGAGTCGGCGTTCAAGAACTGTTCGTTTCAAATTCGTTTTTTATTC
GAGGCATTGGTTTGCGAGATATGGGCAAAACAAGAAGAATTTCAGTAACT
GTACTTCTTGGTACCCTTGTTTTTCTCATATCTCAATCACGAGTGCCTCG
ATTGAAAAACGTAGAACAGTTCTTGATCACGGACGCCATACTCTTTCACG
AGGTTTTGAGCCGTTTTGCATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig7421:8503..8975+

>mRNA_H-paniculata_contig7421.15407.1 ID=mRNA_H-paniculata_contig7421.15407.1|Name=mRNA_H-paniculata_contig7421.15407.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig7421:8503..8975+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATGGGCAATCCTCAAATGAGTTTTTTTTTTTTTGTGGGGTCGAAGC
GATTTTTTGTGATTTTACCGTCAACGGTTGCCGAATCATGCATCACGGCC
CAAGACTTCTGAAAGAGTATGGAGTCGGCGTTCAAGAACTGTTCGTTTCA
AATTCGTTTTTTATTCGAGGCATTGGTTTGCGAGATATGGGCAAAACAAG
AAGAATTTCAGTAACTGTACTTCTTGGTACCCTTGTTTTTCTCATATCTC
AATCACGAGTGCCTCGATTGAAAAACGTAGAACAGTTCTTGATCACGGAC
GCCATACTCTTTCACGAGGTTTTGAGCCGTTTTGCATGAATGAATGGGCA
ATCCTCAAATGAGTTTTTTTTTTTTTGTGGGGTCGAAGCGATTTTTTGTG
ATTTTACCGTCAACGGTTGCCGAATCATGCATCACGGCCCAAGACTTCTG
AAAGAGTATGGAGTCGGCGTTCAAGAACTGTTCGTTTCAAATTCGTTTTT
TATTCGAGGCATTGGTTTGCGAGATATGGGCAAAACAAGAAGAATTTCAG
TAACTGTACTTCTTGGTACCCTTGTTTTTCTCATATCTCAATCACGAGTG
CCTCGATTGAAAAACGTAGAACAGTTCTTGATCACGGACGCCATACTCTT
TCACGAGGTTTTGAGCCGTTTTGCATGA
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