mRNA_H-paniculata_contig74189.15400.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig74189.15400.1
Unique NamemRNA_H-paniculata_contig74189.15400.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig74189.15400.1 vs. uniprot
Match: D1J701_ECTSI (Probable plastid-specific 30S ribosomal protein n=6 Tax=Ectocarpales TaxID=2877 RepID=D1J701_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 4.540e-58
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1
Query:    4 MSNDNIYVFKILWSKNYLGLAVDKKLENNSTMPITTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILNNYTTIINYWLSNVDE 255
            MSNDNIYVFKILWSKNYLGLAVDKKLENNSTMPITTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILNNYTTIINYWLSNVDE
Sbjct:    1 MSNDNIYVFKILWSKNYLGLAVDKKLENNSTMPITTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILNNYTTIINYWLSNVDE 84          
BLAST of mRNA_H-paniculata_contig74189.15400.1 vs. uniprot
Match: A0A1I9LVY6_9PHAE (Putative plastid-specific 30S ribosomal protein n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVY6_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 8.170e-52
Identity = 74/84 (88.10%), Postives = 81/84 (96.43%), Query Frame = 1
Query:    4 MSNDNIYVFKILWSKNYLGLAVDKKLENNSTMPITTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILNNYTTIINYWLSNVDE 255
            MSNDNIYVFKILW K+YLGLAVDKKL+NN T+PITTFFFWPRENGWQLLKEELSYKPWMSKD+SIDILNNYT +INYWL+NVD+
Sbjct:    1 MSNDNIYVFKILWGKSYLGLAVDKKLQNNYTIPITTFFFWPRENGWQLLKEELSYKPWMSKDESIDILNNYTILINYWLTNVDK 84          
BLAST of mRNA_H-paniculata_contig74189.15400.1 vs. uniprot
Match: A0A6B7EVT5_9PHAE (Putative plastid-specific 30S ribosomal protein n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EVT5_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 8.170e-52
Identity = 75/84 (89.29%), Postives = 81/84 (96.43%), Query Frame = 1
Query:    4 MSNDNIYVFKILWSKNYLGLAVDKKLENNSTMPITTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILNNYTTIINYWLSNVDE 255
            M  DNIYVFKILWSKNYLGLAVDKKL+NNSTMPITTFFFWP++NGWQLLKE+LSYKPWMSKDDSI+ILN+YT IINYWLSNVDE
Sbjct:    1 MRKDNIYVFKILWSKNYLGLAVDKKLQNNSTMPITTFFFWPKKNGWQLLKEKLSYKPWMSKDDSINILNDYTIIINYWLSNVDE 84          
BLAST of mRNA_H-paniculata_contig74189.15400.1 vs. uniprot
Match: A0A0R6M0Q9_UNDPI (Putative plastid-specific 30S ribosomal protein n=26 Tax=Laminariales TaxID=2886 RepID=A0A0R6M0Q9_UNDPI)

HSP 1 Score: 160 bits (405), Expect = 1.590e-49
Identity = 73/84 (86.90%), Postives = 78/84 (92.86%), Query Frame = 1
Query:    4 MSNDNIYVFKILWSKNYLGLAVDKKLENNSTMPITTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILNNYTTIINYWLSNVDE 255
            M N +IYVFKI+WSKNYLGLAVDKKL+NN T+PITTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILN YT IINYWL NV+E
Sbjct:    1 MLNKSIYVFKIIWSKNYLGLAVDKKLQNNRTLPITTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILNAYTEIINYWLVNVNE 84          
BLAST of mRNA_H-paniculata_contig74189.15400.1 vs. uniprot
Match: A0A8F0FAW0_9PHAE (Uncharacterized protein n=3 Tax=Laminariales TaxID=2886 RepID=A0A8F0FAW0_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 9.470e-49
Identity = 71/80 (88.75%), Postives = 75/80 (93.75%), Query Frame = 1
Query:   16 NIYVFKILWSKNYLGLAVDKKLENNSTMPITTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILNNYTTIINYWLSNVDE 255
            NIYVFKI+WSKNYLGLAVDKKL NN T+P+TTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILN YT IINYWL NV+E
Sbjct:    6 NIYVFKIIWSKNYLGLAVDKKLPNNHTLPVTTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILNGYTEIINYWLLNVNE 85          
BLAST of mRNA_H-paniculata_contig74189.15400.1 vs. uniprot
Match: A0A8F0FAU8_9PHAE (Uncharacterized protein n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAU8_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 8.820e-47
Identity = 67/84 (79.76%), Postives = 77/84 (91.67%), Query Frame = 1
Query:    4 MSNDNIYVFKILWSKNYLGLAVDKKLENNSTMPITTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILNNYTTIINYWLSNVDE 255
            M + N Y+FKI+WSKNYLGLAVDKKL+NN T+PITTFFFWPRENGWQLLKEELSYKPW+SKD+SIDILN Y+ +INYWL NV+E
Sbjct:    1 MQSKNNYLFKIIWSKNYLGLAVDKKLQNNHTVPITTFFFWPRENGWQLLKEELSYKPWISKDESIDILNGYSNLINYWLKNVNE 84          
BLAST of mRNA_H-paniculata_contig74189.15400.1 vs. uniprot
Match: D1GJM8_FUCVE (Conserved hypothetical plastid protein n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJM8_FUCVE)

HSP 1 Score: 152 bits (383), Expect = 3.700e-46
Identity = 66/85 (77.65%), Postives = 79/85 (92.94%), Query Frame = 1
Query:    1 IMSNDNIYVFKILWSKNYLGLAVDKKLENNSTMPITTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILNNYTTIINYWLSNVDE 255
            +++ +NIYVFKI+WSKNYLGLAVDKKL+NN T+P+TTFFFWPRENGWQLLKEELS KPW+SK+DSIDILN+Y  IINYWL NV++
Sbjct:    1 MINKNNIYVFKIIWSKNYLGLAVDKKLQNNQTLPLTTFFFWPRENGWQLLKEELSCKPWISKEDSIDILNSYNEIINYWLRNVNK 85          
BLAST of mRNA_H-paniculata_contig74189.15400.1 vs. uniprot
Match: A0A0Y0KCK9_9PHAE (Ycf65 n=12 Tax=Sargassum TaxID=3015 RepID=A0A0Y0KCK9_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 9.760e-43
Identity = 61/78 (78.21%), Postives = 72/78 (92.31%), Query Frame = 1
Query:   22 YVFKILWSKNYLGLAVDKKLENNSTMPITTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILNNYTTIINYWLSNVDE 255
            Y+FKI+WSKNYLGLAVDKKL++N T+P+TTFFFWPRENGWQLLKEELS KPW+SK+DSIDILN Y  IINYW+ NV++
Sbjct:   13 YIFKIIWSKNYLGLAVDKKLQSNQTLPLTTFFFWPRENGWQLLKEELSCKPWISKEDSIDILNGYNEIINYWIENVNK 90          
BLAST of mRNA_H-paniculata_contig74189.15400.1 vs. uniprot
Match: A0A1L2F1K2_9PHAE (Ycf65 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1K2_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 1.140e-41
Identity = 60/78 (76.92%), Postives = 71/78 (91.03%), Query Frame = 1
Query:   22 YVFKILWSKNYLGLAVDKKLENNSTMPITTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILNNYTTIINYWLSNVDE 255
            Y+FKI+WSKNYL LAVDKKL++N T+P+TTFFFWPRENGWQLLKEELS KPW+SK+DSIDILN Y+ IINYW+ NV +
Sbjct:   13 YIFKIIWSKNYLALAVDKKLQSNQTLPLTTFFFWPRENGWQLLKEELSCKPWISKEDSIDILNGYSEIINYWVKNVSK 90          
BLAST of mRNA_H-paniculata_contig74189.15400.1 vs. uniprot
Match: A0A8E5XRJ5_9PHAE (Uncharacterized protein n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRJ5_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 8.300e-37
Identity = 55/78 (70.51%), Postives = 66/78 (84.62%), Query Frame = 1
Query:   22 YVFKILWSKNYLGLAVDKKLENNSTMPITTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILNNYTTIINYWLSNVDE 255
            YVFKI+W KNYLGLAVD+++ NN T PIT+ FFWPRENGW+LL+ ELS KPWM+K++ I+ILN YT IINYWL NV E
Sbjct:   12 YVFKIIWGKNYLGLAVDRQIPNNLTSPITSLFFWPRENGWELLRAELSDKPWMTKEERIEILNGYTKIINYWLENVKE 89          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig74189.15400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J701_ECTSI4.540e-58100.00Probable plastid-specific 30S ribosomal protein n=... [more]
A0A1I9LVY6_9PHAE8.170e-5288.10Putative plastid-specific 30S ribosomal protein n=... [more]
A0A6B7EVT5_9PHAE8.170e-5289.29Putative plastid-specific 30S ribosomal protein n=... [more]
A0A0R6M0Q9_UNDPI1.590e-4986.90Putative plastid-specific 30S ribosomal protein n=... [more]
A0A8F0FAW0_9PHAE9.470e-4988.75Uncharacterized protein n=3 Tax=Laminariales TaxID... [more]
A0A8F0FAU8_9PHAE8.820e-4779.76Uncharacterized protein n=1 Tax=Desmarestia aculea... [more]
D1GJM8_FUCVE3.700e-4677.65Conserved hypothetical plastid protein n=3 Tax=Fuc... [more]
A0A0Y0KCK9_9PHAE9.760e-4378.21Ycf65 n=12 Tax=Sargassum TaxID=3015 RepID=A0A0Y0KC... [more]
A0A1L2F1K2_9PHAE1.140e-4176.92Ycf65 n=1 Tax=Coccophora langsdorfii TaxID=74099 R... [more]
A0A8E5XRJ5_9PHAE8.300e-3770.51Uncharacterized protein n=1 Tax=Ishige okamurae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig74189contigH-paniculata_contig74189:1..255 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score182.6
Seed ortholog evalue7.8e-44
Seed eggNOG ortholog2880.D1J701
Preferred nameycf65
KEGG koko:K19032
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
EggNOG OGs2C5W0@1,2SDQ9@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko03011
Exons1
Model size255
Cds size252
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930909.1617372-CDS-H-paniculata_contig74189:0..2521622930909.1617372-CDS-H-paniculata_contig74189:0..252Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig74189 1..252 -
1691481506.1760445-CDS-H-paniculata_contig74189:0..2521691481506.1760445-CDS-H-paniculata_contig74189:0..252Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig74189 1..252 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930909.177592-UTR-H-paniculata_contig74189:252..2551622930909.177592-UTR-H-paniculata_contig74189:252..255Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig74189 253..255 -
1691481506.1921766-UTR-H-paniculata_contig74189:252..2551691481506.1921766-UTR-H-paniculata_contig74189:252..255Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig74189 253..255 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig74189.15400.1prot_H-paniculata_contig74189.15400.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig74189 1..252 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig74189.15400.1

>prot_H-paniculata_contig74189.15400.1 ID=prot_H-paniculata_contig74189.15400.1|Name=mRNA_H-paniculata_contig74189.15400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
MSNDNIYVFKILWSKNYLGLAVDKKLENNSTMPITTFFFWPRENGWQLLK
EELSYKPWMSKDDSIDILNNYTTIINYWLSNVDE
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mRNA from alignment at H-paniculata_contig74189:1..255-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig74189.15400.1 ID=mRNA_H-paniculata_contig74189.15400.1|Name=mRNA_H-paniculata_contig74189.15400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=255bp|location=Sequence derived from alignment at H-paniculata_contig74189:1..255- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTATGTCAAATGATAATATTTATGTATTTAAAATCCTTTGGAGTAAAAA TTATTTAGGTCTCGCTGTAGATAAAAAACTAGAAAATAATTCCACAATGC CTATTACTACATTCTTCTTTTGGCCGCGGGAGAATGGTTGGCAATTACTA AAAGAAGAATTATCTTATAAACCATGGATGTCAAAAGATGATTCGATTGA TATATTGAATAATTATACAACAATTATAAACTACTGGTTATCAAATGTTG ATGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig74189:1..255-

>mRNA_H-paniculata_contig74189.15400.1 ID=mRNA_H-paniculata_contig74189.15400.1|Name=mRNA_H-paniculata_contig74189.15400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig74189:1..255- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAAATGATAATATTTATGTATTTAAAATCCTTTGGAGTAAAAATTA
TTTAGGTCTCGCTGTAGATAAAAAACTAGAAAATAATTCCACAATGCCTA
TTACTACATTCTTCTTTTGGCCGCGGGAGAATGGTTGGCAATTACTAAAA
GAAGAATTATCTTATAAACCATGGATGTCAAAAGATGATTCGATTGATAT
ATTGAATAATTATACAACAATTATAAACTACTGGTTATCAAATGTTGATG
AAATGTCAAATGATAATATTTATGTATTTAAAATCCTTTGGAGTAAAAAT
TATTTAGGTCTCGCTGTAGATAAAAAACTAGAAAATAATTCCACAATGCC
TATTACTACATTCTTCTTTTGGCCGCGGGAGAATGGTTGGCAATTACTAA
AAGAAGAATTATCTTATAAACCATGGATGTCAAAAGATGATTCGATTGAT
ATATTGAATAATTATACAACAATTATAAACTACTGGTTATCAAATGTTGA
TGAA
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