mRNA_H-paniculata_contig74189.15400.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig74189.15400.1 vs. uniprot
Match: D1J701_ECTSI (Probable plastid-specific 30S ribosomal protein n=6 Tax=Ectocarpales TaxID=2877 RepID=D1J701_ECTSI) HSP 1 Score: 182 bits (461), Expect = 4.540e-58 Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1
Query: 4 MSNDNIYVFKILWSKNYLGLAVDKKLENNSTMPITTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILNNYTTIINYWLSNVDE 255
MSNDNIYVFKILWSKNYLGLAVDKKLENNSTMPITTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILNNYTTIINYWLSNVDE
Sbjct: 1 MSNDNIYVFKILWSKNYLGLAVDKKLENNSTMPITTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILNNYTTIINYWLSNVDE 84
BLAST of mRNA_H-paniculata_contig74189.15400.1 vs. uniprot
Match: A0A1I9LVY6_9PHAE (Putative plastid-specific 30S ribosomal protein n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVY6_9PHAE) HSP 1 Score: 166 bits (420), Expect = 8.170e-52 Identity = 74/84 (88.10%), Postives = 81/84 (96.43%), Query Frame = 1
Query: 4 MSNDNIYVFKILWSKNYLGLAVDKKLENNSTMPITTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILNNYTTIINYWLSNVDE 255
MSNDNIYVFKILW K+YLGLAVDKKL+NN T+PITTFFFWPRENGWQLLKEELSYKPWMSKD+SIDILNNYT +INYWL+NVD+
Sbjct: 1 MSNDNIYVFKILWGKSYLGLAVDKKLQNNYTIPITTFFFWPRENGWQLLKEELSYKPWMSKDESIDILNNYTILINYWLTNVDK 84
BLAST of mRNA_H-paniculata_contig74189.15400.1 vs. uniprot
Match: A0A6B7EVT5_9PHAE (Putative plastid-specific 30S ribosomal protein n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EVT5_9PHAE) HSP 1 Score: 166 bits (420), Expect = 8.170e-52 Identity = 75/84 (89.29%), Postives = 81/84 (96.43%), Query Frame = 1
Query: 4 MSNDNIYVFKILWSKNYLGLAVDKKLENNSTMPITTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILNNYTTIINYWLSNVDE 255
M DNIYVFKILWSKNYLGLAVDKKL+NNSTMPITTFFFWP++NGWQLLKE+LSYKPWMSKDDSI+ILN+YT IINYWLSNVDE
Sbjct: 1 MRKDNIYVFKILWSKNYLGLAVDKKLQNNSTMPITTFFFWPKKNGWQLLKEKLSYKPWMSKDDSINILNDYTIIINYWLSNVDE 84
BLAST of mRNA_H-paniculata_contig74189.15400.1 vs. uniprot
Match: A0A0R6M0Q9_UNDPI (Putative plastid-specific 30S ribosomal protein n=26 Tax=Laminariales TaxID=2886 RepID=A0A0R6M0Q9_UNDPI) HSP 1 Score: 160 bits (405), Expect = 1.590e-49 Identity = 73/84 (86.90%), Postives = 78/84 (92.86%), Query Frame = 1
Query: 4 MSNDNIYVFKILWSKNYLGLAVDKKLENNSTMPITTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILNNYTTIINYWLSNVDE 255
M N +IYVFKI+WSKNYLGLAVDKKL+NN T+PITTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILN YT IINYWL NV+E
Sbjct: 1 MLNKSIYVFKIIWSKNYLGLAVDKKLQNNRTLPITTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILNAYTEIINYWLVNVNE 84
BLAST of mRNA_H-paniculata_contig74189.15400.1 vs. uniprot
Match: A0A8F0FAW0_9PHAE (Uncharacterized protein n=3 Tax=Laminariales TaxID=2886 RepID=A0A8F0FAW0_9PHAE) HSP 1 Score: 158 bits (400), Expect = 9.470e-49 Identity = 71/80 (88.75%), Postives = 75/80 (93.75%), Query Frame = 1
Query: 16 NIYVFKILWSKNYLGLAVDKKLENNSTMPITTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILNNYTTIINYWLSNVDE 255
NIYVFKI+WSKNYLGLAVDKKL NN T+P+TTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILN YT IINYWL NV+E
Sbjct: 6 NIYVFKIIWSKNYLGLAVDKKLPNNHTLPVTTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILNGYTEIINYWLLNVNE 85
BLAST of mRNA_H-paniculata_contig74189.15400.1 vs. uniprot
Match: A0A8F0FAU8_9PHAE (Uncharacterized protein n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAU8_9PHAE) HSP 1 Score: 153 bits (387), Expect = 8.820e-47 Identity = 67/84 (79.76%), Postives = 77/84 (91.67%), Query Frame = 1
Query: 4 MSNDNIYVFKILWSKNYLGLAVDKKLENNSTMPITTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILNNYTTIINYWLSNVDE 255
M + N Y+FKI+WSKNYLGLAVDKKL+NN T+PITTFFFWPRENGWQLLKEELSYKPW+SKD+SIDILN Y+ +INYWL NV+E
Sbjct: 1 MQSKNNYLFKIIWSKNYLGLAVDKKLQNNHTVPITTFFFWPRENGWQLLKEELSYKPWISKDESIDILNGYSNLINYWLKNVNE 84
BLAST of mRNA_H-paniculata_contig74189.15400.1 vs. uniprot
Match: D1GJM8_FUCVE (Conserved hypothetical plastid protein n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJM8_FUCVE) HSP 1 Score: 152 bits (383), Expect = 3.700e-46 Identity = 66/85 (77.65%), Postives = 79/85 (92.94%), Query Frame = 1
Query: 1 IMSNDNIYVFKILWSKNYLGLAVDKKLENNSTMPITTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILNNYTTIINYWLSNVDE 255
+++ +NIYVFKI+WSKNYLGLAVDKKL+NN T+P+TTFFFWPRENGWQLLKEELS KPW+SK+DSIDILN+Y IINYWL NV++
Sbjct: 1 MINKNNIYVFKIIWSKNYLGLAVDKKLQNNQTLPLTTFFFWPRENGWQLLKEELSCKPWISKEDSIDILNSYNEIINYWLRNVNK 85
BLAST of mRNA_H-paniculata_contig74189.15400.1 vs. uniprot
Match: A0A0Y0KCK9_9PHAE (Ycf65 n=12 Tax=Sargassum TaxID=3015 RepID=A0A0Y0KCK9_9PHAE) HSP 1 Score: 143 bits (361), Expect = 9.760e-43 Identity = 61/78 (78.21%), Postives = 72/78 (92.31%), Query Frame = 1
Query: 22 YVFKILWSKNYLGLAVDKKLENNSTMPITTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILNNYTTIINYWLSNVDE 255
Y+FKI+WSKNYLGLAVDKKL++N T+P+TTFFFWPRENGWQLLKEELS KPW+SK+DSIDILN Y IINYW+ NV++
Sbjct: 13 YIFKIIWSKNYLGLAVDKKLQSNQTLPLTTFFFWPRENGWQLLKEELSCKPWISKEDSIDILNGYNEIINYWIENVNK 90
BLAST of mRNA_H-paniculata_contig74189.15400.1 vs. uniprot
Match: A0A1L2F1K2_9PHAE (Ycf65 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1K2_9PHAE) HSP 1 Score: 140 bits (354), Expect = 1.140e-41 Identity = 60/78 (76.92%), Postives = 71/78 (91.03%), Query Frame = 1
Query: 22 YVFKILWSKNYLGLAVDKKLENNSTMPITTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILNNYTTIINYWLSNVDE 255
Y+FKI+WSKNYL LAVDKKL++N T+P+TTFFFWPRENGWQLLKEELS KPW+SK+DSIDILN Y+ IINYW+ NV +
Sbjct: 13 YIFKIIWSKNYLALAVDKKLQSNQTLPLTTFFFWPRENGWQLLKEELSCKPWISKEDSIDILNGYSEIINYWVKNVSK 90
BLAST of mRNA_H-paniculata_contig74189.15400.1 vs. uniprot
Match: A0A8E5XRJ5_9PHAE (Uncharacterized protein n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRJ5_9PHAE) HSP 1 Score: 128 bits (322), Expect = 8.300e-37 Identity = 55/78 (70.51%), Postives = 66/78 (84.62%), Query Frame = 1
Query: 22 YVFKILWSKNYLGLAVDKKLENNSTMPITTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILNNYTTIINYWLSNVDE 255
YVFKI+W KNYLGLAVD+++ NN T PIT+ FFWPRENGW+LL+ ELS KPWM+K++ I+ILN YT IINYWL NV E
Sbjct: 12 YVFKIIWGKNYLGLAVDRQIPNNLTSPITSLFFWPRENGWELLRAELSDKPWMTKEERIEILNGYTKIINYWLENVKE 89 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig74189.15400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig74189.15400.1 >prot_H-paniculata_contig74189.15400.1 ID=prot_H-paniculata_contig74189.15400.1|Name=mRNA_H-paniculata_contig74189.15400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp MSNDNIYVFKILWSKNYLGLAVDKKLENNSTMPITTFFFWPRENGWQLLKback to top mRNA from alignment at H-paniculata_contig74189:1..255- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig74189.15400.1 ID=mRNA_H-paniculata_contig74189.15400.1|Name=mRNA_H-paniculata_contig74189.15400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=255bp|location=Sequence derived from alignment at H-paniculata_contig74189:1..255- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig74189:1..255- >mRNA_H-paniculata_contig74189.15400.1 ID=mRNA_H-paniculata_contig74189.15400.1|Name=mRNA_H-paniculata_contig74189.15400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig74189:1..255- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |