mRNA_H-paniculata_contig74133.15397.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig74133.15397.1
Unique NamemRNA_H-paniculata_contig74133.15397.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig74133.15397.1 vs. uniprot
Match: A0A6H5JQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD0_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.470e-25
Identity = 50/75 (66.67%), Postives = 62/75 (82.67%), Query Frame = -3 
Query:    2 IRTVLDRFPVTKSSPIPASPSLDLRHVSDDETVVDVPFREVVGTLLWIAGQTRPDIANAVRAMARFSHDPKEVHW 226
            IR+VL+RF V ++S IPASP+ D R V +DE   DVPFREVVG+L+WIA QTRPDI+NAVRA+AR SH+PK+ HW
Sbjct:  235 IRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHW 309
[Close]
BLAST of mRNA_H-paniculata_contig74133.15397.1 vs. uniprot
Match: A0A6H5K4I2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4I2_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 4.610e-25
Identity = 47/75 (62.67%), Postives = 62/75 (82.67%), Query Frame = -3 
Query:    2 IRTVLDRFPVTKSSPIPASPSLDLRHVSDDETVVDVPFREVVGTLLWIAGQTRPDIANAVRAMARFSHDPKEVHW 226
            +R+VL+RF + ++S IPASP+ D R V ++E   DVPFREVVG+L+WIA QTRPDI+NAVRA+AR SH+PK+ HW
Sbjct:  217 VRSVLERFNICRTSSIPASPASDYRSVMEEEKAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHW 291
[Close]
BLAST of mRNA_H-paniculata_contig74133.15397.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 4.910e-25
Identity = 50/75 (66.67%), Postives = 62/75 (82.67%), Query Frame = -3 
Query:    2 IRTVLDRFPVTKSSPIPASPSLDLRHVSDDETVVDVPFREVVGTLLWIAGQTRPDIANAVRAMARFSHDPKEVHW 226
            IR+VL+RF V ++S IPASP+ D R V +DE   DVPFREVVG+L+WIA QTRPDI+NAVRA+AR SH+PK+ HW
Sbjct:  701 IRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHW 775
[Close]
BLAST of mRNA_H-paniculata_contig74133.15397.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 4.930e-25
Identity = 50/75 (66.67%), Postives = 62/75 (82.67%), Query Frame = -3 
Query:    2 IRTVLDRFPVTKSSPIPASPSLDLRHVSDDETVVDVPFREVVGTLLWIAGQTRPDIANAVRAMARFSHDPKEVHW 226
            IR+VL+RF V ++S IPASP+ D R V +DE   DVPFREVVG+L+WIA QTRPDI+NAVRA+AR SH+PK+ HW
Sbjct:  968 IRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHW 1042
[Close]
BLAST of mRNA_H-paniculata_contig74133.15397.1 vs. uniprot
Match: A0A6H5KBM6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM6_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 6.100e-25
Identity = 48/75 (64.00%), Postives = 61/75 (81.33%), Query Frame = -3 
Query:    2 IRTVLDRFPVTKSSPIPASPSLDLRHVSDDETVVDVPFREVVGTLLWIAGQTRPDIANAVRAMARFSHDPKEVHW 226
            IR+VL+RF V ++S IPASP+ D R V +DE   DVPFREVVG+L+WIA QTRPDI+NA+RA+ R SH+PK+ HW
Sbjct:   70 IRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNALRAVVRHSHEPKKSHW 144
[Close]
BLAST of mRNA_H-paniculata_contig74133.15397.1 vs. uniprot
Match: A0A6H5J9U3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9U3_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 4.590e-24
Identity = 47/75 (62.67%), Postives = 60/75 (80.00%), Query Frame = -3 
Query:    2 IRTVLDRFPVTKSSPIPASPSLDLRHVSDDETVVDVPFREVVGTLLWIAGQTRPDIANAVRAMARFSHDPKEVHW 226
            IR+VL+RF V ++S IPASP++  R V ++E   DVPFREVVG L+WIA QTRPDI+NAVRA+AR S++PK  HW
Sbjct:   43 IRSVLERFNVVRTSSIPASPTVVNRSVMENEEAGDVPFREVVGCLMWIASQTRPDISNAVRAVARHSNEPKLSHW 117
[Close]
BLAST of mRNA_H-paniculata_contig74133.15397.1 vs. uniprot
Match: A0A6H5JFT6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT6_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 8.120e-24
Identity = 47/75 (62.67%), Postives = 60/75 (80.00%), Query Frame = -3 
Query:    2 IRTVLDRFPVTKSSPIPASPSLDLRHVSDDETVVDVPFREVVGTLLWIAGQTRPDIANAVRAMARFSHDPKEVHW 226
            IR+VL++F V ++S IPASP+ D R V +D+   DVPFREVVG+L+WI  QTRPDI+NAVRA+AR SH+PK  HW
Sbjct:  265 IRSVLEKFNVCRTSSIPASPANDYRSVMEDKGAGDVPFREVVGSLMWIPNQTRPDISNAVRAVARHSHEPKRSHW 339
[Close]
BLAST of mRNA_H-paniculata_contig74133.15397.1 vs. uniprot
Match: A0A6H5JCE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCE4_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.340e-23
Identity = 47/75 (62.67%), Postives = 58/75 (77.33%), Query Frame = -3 
Query:    2 IRTVLDRFPVTKSSPIPASPSLDLRHVSDDETVVDVPFREVVGTLLWIAGQTRPDIANAVRAMARFSHDPKEVHW 226
            IR+VL+RF V ++S IPAS + D R V +DE    VPFREVVG+L+WIA QTRPDI+NAVRA+AR S +PK  HW
Sbjct:   70 IRSVLERFNVCRTSSIPASLANDYRSVMEDEGAGGVPFREVVGSLMWIANQTRPDISNAVRAVARHSREPKRSHW 144
[Close]
BLAST of mRNA_H-paniculata_contig74133.15397.1 vs. uniprot
Match: A0A6H5KSI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI5_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 2.050e-23
Identity = 48/75 (64.00%), Postives = 60/75 (80.00%), Query Frame = -3 
Query:    2 IRTVLDRFPVTKSSPIPASPSLDLRHVSDDETVVDVPFREVVGTLLWIAGQTRPDIANAVRAMARFSHDPKEVHW 226
            IR+VL+RF V ++S IPASP+ D + V +DE   DVPFREVVG+L+WIA QTRP I+NAVRA+AR SH+PK  HW
Sbjct:  341 IRSVLERFNVCRTSSIPASPANDYKSVMEDEGAGDVPFREVVGSLMWIANQTRPAISNAVRAVARHSHEPKRSHW 415
[Close]
BLAST of mRNA_H-paniculata_contig74133.15397.1 vs. uniprot
Match: A0A6H5JV18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV18_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.600e-23
Identity = 44/75 (58.67%), Postives = 61/75 (81.33%), Query Frame = -3 
Query:    2 IRTVLDRFPVTKSSPIPASPSLDLRHVSDDETVVDVPFREVVGTLLWIAGQTRPDIANAVRAMARFSHDPKEVHW 226
            +R+VL+RF + ++S IPASP+ D R V ++E   D PFREVVG+L+WIA QTRPDI+NA++A+AR SH+PK+ HW
Sbjct:  215 VRSVLERFNICRTSSIPASPASDYRSVIEEEKAGDAPFREVVGSLMWIANQTRPDISNAMQAVARHSHEPKKSHW 289
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig74133.15397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQD0_9PHAE1.470e-2566.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K4I2_9PHAE4.610e-2562.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KKK1_9PHAE4.910e-2566.67Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRL9_9PHAE4.930e-2566.67Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KBM6_9PHAE6.100e-2564.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J9U3_9PHAE4.590e-2462.67Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JFT6_9PHAE8.120e-2462.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JCE4_9PHAE1.340e-2362.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSI5_9PHAE2.050e-2364.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV18_9PHAE2.600e-2358.67Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig74133contigH-paniculata_contig74133:38..628 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size228
Cds size144
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig74133.15397.1prot_H-paniculata_contig74133.15397.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig74133 60..566 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930908.7256515-UTR-H-paniculata_contig74133:37..591622930908.7256515-UTR-H-paniculata_contig74133:37..59Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig74133 38..59 +
1691481505.9492805-UTR-H-paniculata_contig74133:37..591691481505.9492805-UTR-H-paniculata_contig74133:37..59Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig74133 38..59 +
1622930908.7770102-UTR-H-paniculata_contig74133:566..6281622930908.7770102-UTR-H-paniculata_contig74133:566..628Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig74133 567..628 +
1691481505.991337-UTR-H-paniculata_contig74133:566..6281691481505.991337-UTR-H-paniculata_contig74133:566..628Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig74133 567..628 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930908.7381325-CDS-H-paniculata_contig74133:59..1541622930908.7381325-CDS-H-paniculata_contig74133:59..154Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig74133 60..154 +
1691481505.962438-CDS-H-paniculata_contig74133:59..1541691481505.962438-CDS-H-paniculata_contig74133:59..154Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig74133 60..154 +
1622930908.7603416-CDS-H-paniculata_contig74133:517..5661622930908.7603416-CDS-H-paniculata_contig74133:517..566Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig74133 518..566 +
1691481505.9784-CDS-H-paniculata_contig74133:517..5661691481505.9784-CDS-H-paniculata_contig74133:517..566Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig74133 518..566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig74133.15397.1

>prot_H-paniculata_contig74133.15397.1 ID=prot_H-paniculata_contig74133.15397.1|Name=mRNA_H-paniculata_contig74133.15397.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=48bp
MREPRHRPYCIGDVGPCLTSDPQKGPHHLSERHIHHSLVVAYVPEIQ*
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mRNA from alignment at H-paniculata_contig74133:38..628+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig74133.15397.1 ID=mRNA_H-paniculata_contig74133.15397.1|Name=mRNA_H-paniculata_contig74133.15397.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=591bp|location=Sequence derived from alignment at H-paniculata_contig74133:38..628+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCAGTGGACCTCCTTTGGATCATGAGAGAACCTCGCCATCGCCCGTACT
GCATTGGCGATGTCGGGCCTTGTCTGACCAGCGATCCACAGAAGGGTCCC
CACCACCTCTCGGAACGGCACTGTTGGATATACTCGTAGCATAGAATGAT
GGATATACATGAAGGATCTATGGTTGGATATGGGAGCGGTCTATTACTGA
GGATTAGGAAATTTCTGTGTAGTTTCTTCGGCGTATCTTGGGGTATTGGA
GATTCAAGTAGGGGAAGTGTTCTGGTGCAGTCTTGTGGAGGAGCCCTACT
CCTGTGACTTCATCCTCCCCACTTCACCATTCCCAACTCCTACCCTTTTC
TTTTCTGTATACAACAACAGGGAACGGTTCATCAGTAATAACACAAGACT
CTTTCTCTCGGCCCGCCTTTCACAAGCTGCCTTCAACTCCACACAGTCTC
GAGCACAGCTCTGCCCAGTTTACCGATTAGGCACATCCACCACAGTCTCG
TCGTCGCTTACGTGCCTGAGATCCAATGATGGAGAAGCAGGAATGGGACT
GGATTTTGTTACGGGAAAACGGTCGAGCACAGTACGGATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig74133:38..628+

>mRNA_H-paniculata_contig74133.15397.1 ID=mRNA_H-paniculata_contig74133.15397.1|Name=mRNA_H-paniculata_contig74133.15397.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=288bp|location=Sequence derived from alignment at H-paniculata_contig74133:38..628+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGAGAACCTCGCCATCGCCCGTACTGCATTGGCGATGTCGGGCCTTG
TCTGACCAGCGATCCACAGAAGGGTCCCCACCACCTCTCGGAACGATGAG
AGAACCTCGCCATCGCCCGTACTGCATTGGCGATGTCGGGCCTTGTCTGA
CCAGCGATCCACAGAAGGGTCCCCACCACCTCTCGGAACGGCACATCCAC
CACAGTCTCGTCGTCGCTTACGTGCCTGAGATCCAATGAGCACATCCACC
ACAGTCTCGTCGTCGCTTACGTGCCTGAGATCCAATGA
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