mRNA_H-paniculata_contig7411.15393.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7411.15393.1
Unique NamemRNA_H-paniculata_contig7411.15393.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7411.15393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7411contigH-paniculata_contig7411:6486..7800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size869
Cds size867
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930908.1573536-CDS-H-paniculata_contig7411:6485..69871622930908.1573536-CDS-H-paniculata_contig7411:6485..6987Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7411 6486..6987 -
1691481505.7411158-CDS-H-paniculata_contig7411:6485..69871691481505.7411158-CDS-H-paniculata_contig7411:6485..6987Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7411 6486..6987 -
1622930908.1787117-CDS-H-paniculata_contig7411:7435..78001622930908.1787117-CDS-H-paniculata_contig7411:7435..7800Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7411 7436..7800 -
1691481505.7555146-CDS-H-paniculata_contig7411:7435..78001691481505.7555146-CDS-H-paniculata_contig7411:7435..7800Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7411 7436..7800 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7411.15393.1prot_H-paniculata_contig7411.15393.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7411 6486..7800 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7411.15393.1

>prot_H-paniculata_contig7411.15393.1 ID=prot_H-paniculata_contig7411.15393.1|Name=mRNA_H-paniculata_contig7411.15393.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=289bp
GIKSTVVVAVVGKHGGSGRKQNVQLKLPGDQGAHVTVAAMPRVEGGGQDG
NRKRPQLSSGRASGLITGAVTPWDAVNNPGERLTSSSSFSADEDSEPEST
AHQRDGGSNGPNVFNSITVSGRSGGPGHGSVPNEAPTSIILPASDRRVDG
RGDGGIGSEENATATSGRSVVFANRTPFVPYKSVDPHQWQPGSIFGSADV
VGFGPAVVAASGSTGSDGSPPVSLAALGVKGREQQQRKATLVVPPLPTPT
KVVWKSGLGTTAAAATLGGRSGVRREGFKEVKEGGRGW*
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mRNA from alignment at H-paniculata_contig7411:6486..7800-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7411.15393.1 ID=mRNA_H-paniculata_contig7411.15393.1|Name=mRNA_H-paniculata_contig7411.15393.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1315bp|location=Sequence derived from alignment at H-paniculata_contig7411:6486..7800- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGATCAAATCTACGGTGGTGGTGGCGGTGGTCGGCAAGCACGGCGGGAG
TGGGCGTAAGCAGAACGTTCAGTTGAAATTACCCGGTGACCAAGGCGCTC
ATGTCACCGTTGCCGCAATGCCCAGAGTTGAAGGTGGTGGGCAGGACGGC
AATCGGAAGAGGCCTCAACTCTCGTCAGGGCGCGCCTCAGGGTTGATCAC
TGGCGCTGTAACGCCTTGGGATGCGGTAAACAACCCGGGAGAACGTTTGA
CGTCCTCGAGTTCTTTTTCGGCGGATGAAGATTCGGAGCCAGAATCGACG
GCACACCAGAGAGATGGGGGCAGCAATGGGCCGAACGTCTTCAATTCCAT
CACGGTTAGCGGAAGGTGAAGAGTTGATTGGTTTGTAAATACGATACTGT
TCAGTATCACCGCGGGGGTCTCCGTAGTGGGAAGTAATGCTATGTTCTTC
GCTTGGGAGAACCTGACAAACATGCTTGTATCGATTCAGCCCCTGTGACT
GGGAGCAGGCTGATTTGCGAGTCTACCTCGTGACTAATTAGATCGTTTTC
TCTTTGAAAAGTAGTACGATCAACTTATCTGTGACATGCACCTATTTTGA
TAAGATTTGTTTTCGTGTTGGTGAAAGAAACTCACATGATAAAATTTGAT
CGGTGTGATCACGTGAAATTCACAATTCGGACTCATAGGTCACGCGGCGG
TATATGTGCTCACTCACGTCCGCCGTTCTTGCGCGGTGTTTTTCACGTAC
CCTTAAGCGTAACGATCGTGTCACGCCCCGCACCTTTGTCCTGTCCGTGC
TCAAACTGTCCAGATCTGGTGGTCCTGGCCATGGCTCGGTGCCCAATGAA
GCCCCGACCTCCATAATTCTGCCGGCATCTGATAGGCGAGTGGACGGCAG
GGGTGACGGTGGCATCGGGAGCGAGGAAAATGCAACTGCAACATCGGGAA
GATCCGTTGTTTTCGCCAATCGGACCCCGTTTGTTCCGTATAAATCCGTT
GATCCCCATCAGTGGCAGCCGGGGTCAATTTTTGGCAGTGCGGACGTGGT
CGGCTTCGGGCCGGCGGTGGTGGCGGCCAGCGGTAGCACAGGCAGTGATG
GCAGTCCACCCGTATCGCTCGCGGCGCTTGGGGTAAAGGGGCGGGAGCAG
CAGCAACGAAAGGCAACCCTTGTGGTGCCTCCTTTGCCTACGCCTACAAA
GGTCGTGTGGAAAAGCGGGTTGGGTACTACCGCCGCGGCGGCGACGTTGG
GGGGAAGGTCAGGGGTGAGAAGAGAGGGGTTCAAGGAGGTGAAGGAGGGG
GGCCGTGGGTGGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig7411:6486..7800-

>mRNA_H-paniculata_contig7411.15393.1 ID=mRNA_H-paniculata_contig7411.15393.1|Name=mRNA_H-paniculata_contig7411.15393.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1734bp|location=Sequence derived from alignment at H-paniculata_contig7411:6486..7800- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGATCAAATCTACGGTGGTGGTGGCGGTGGTCGGCAAGCACGGCGGGAG
TGGGCGTAAGCAGAACGTTCAGTTGAAATTACCCGGTGACCAAGGCGCTC
ATGTCACCGTTGCCGCAATGCCCAGAGTTGAAGGTGGTGGGCAGGACGGC
AATCGGAAGAGGCCTCAACTCTCGTCAGGGCGCGCCTCAGGGTTGATCAC
TGGCGCTGTAACGCCTTGGGATGCGGTAAACAACCCGGGAGAACGTTTGA
CGTCCTCGAGTTCTTTTTCGGCGGATGAAGATTCGGAGCCAGAATCGACG
GCACACCAGAGAGATGGGGGCAGCAATGGGCCGAACGTCTTCAATTCCAT
CACGGTTAGCGGAAGGGGATCAAATCTACGGTGGTGGTGGCGGTGGTCGG
CAAGCACGGCGGGAGTGGGCGTAAGCAGAACGTTCAGTTGAAATTACCCG
GTGACCAAGGCGCTCATGTCACCGTTGCCGCAATGCCCAGAGTTGAAGGT
GGTGGGCAGGACGGCAATCGGAAGAGGCCTCAACTCTCGTCAGGGCGCGC
CTCAGGGTTGATCACTGGCGCTGTAACGCCTTGGGATGCGGTAAACAACC
CGGGAGAACGTTTGACGTCCTCGAGTTCTTTTTCGGCGGATGAAGATTCG
GAGCCAGAATCGACGGCACACCAGAGAGATGGGGGCAGCAATGGGCCGAA
CGTCTTCAATTCCATCACGGTTAGCGGAAGATCTGGTGGTCCTGGCCATG
GCTCGGTGCCCAATGAAGCCCCGACCTCCATAATTCTGCCGGCATCTGAT
AGGCGAGTGGACGGCAGGGGTGACGGTGGCATCGGGAGCGAGGAAAATGC
AACTGCAACATCGGGAAGATCCGTTGTTTTCGCCAATCGGACCCCGTTTG
TTCCGTATAAATCCGTTGATCCCCATCAGTGGCAGCCGGGGTCAATTTTT
GGCAGTGCGGACGTGGTCGGCTTCGGGCCGGCGGTGGTGGCGGCCAGCGG
TAGCACAGGCAGTGATGGCAGTCCACCCGTATCGCTCGCGGCGCTTGGGG
TAAAGGGGCGGGAGCAGCAGCAACGAAAGGCAACCCTTGTGGTGCCTCCT
TTGCCTACGCCTACAAAGGTCGTGTGGAAAAGCGGGTTGGGTACTACCGC
CGCGGCGGCGACGTTGGGGGGAAGGTCAGGGGTGAGAAGAGAGGGGTTCA
AGGAGGTGAAGGAGGGGGGCCGTGGGTGGTAGATCTGGTGGTCCTGGCCA
TGGCTCGGTGCCCAATGAAGCCCCGACCTCCATAATTCTGCCGGCATCTG
ATAGGCGAGTGGACGGCAGGGGTGACGGTGGCATCGGGAGCGAGGAAAAT
GCAACTGCAACATCGGGAAGATCCGTTGTTTTCGCCAATCGGACCCCGTT
TGTTCCGTATAAATCCGTTGATCCCCATCAGTGGCAGCCGGGGTCAATTT
TTGGCAGTGCGGACGTGGTCGGCTTCGGGCCGGCGGTGGTGGCGGCCAGC
GGTAGCACAGGCAGTGATGGCAGTCCACCCGTATCGCTCGCGGCGCTTGG
GGTAAAGGGGCGGGAGCAGCAGCAACGAAAGGCAACCCTTGTGGTGCCTC
CTTTGCCTACGCCTACAAAGGTCGTGTGGAAAAGCGGGTTGGGTACTACC
GCCGCGGCGGCGACGTTGGGGGGAAGGTCAGGGGTGAGAAGAGAGGGGTT
CAAGGAGGTGAAGGAGGGGGGCCGTGGGTGGTAG
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