mRNA_H-paniculata_contig7409.15388.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7409.15388.1
Unique NamemRNA_H-paniculata_contig7409.15388.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7409.15388.1 vs. uniprot
Match: D7FX89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX89_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 6.570e-36
Identity = 72/100 (72.00%), Postives = 76/100 (76.00%), Query Frame = 1 
Query:    1 AVWVLASKCCIAAHLFGPQHRYCLEAIDRLCRNDVREAARPAREVLRKRGFRLQLSLARFAAANVRAAAAAEGHAGVAWGLPALRPGWGWVMPRDSYVPE 300
            A W+LA KCC+AAHLFGPQHRYCL AI RLCR DVREAARPAR  LR +GFRLQLSL R AA NVRA AA EG A VAWGLP        V+P DSYVPE
Sbjct:  709 AAWLLADKCCVAAHLFGPQHRYCLRAIGRLCREDVREAARPARAALRSQGFRLQLSLTRLAADNVRAEAAKEGKASVAWGLPDAPLAAQHVLPFDSYVPE 808
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BLAST of mRNA_H-paniculata_contig7409.15388.1 vs. uniprot
Match: A0A6H5KZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZZ4_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 1.300e-35
Identity = 70/100 (70.00%), Postives = 75/100 (75.00%), Query Frame = 1 
Query:    1 AVWVLASKCCIAAHLFGPQHRYCLEAIDRLCRNDVREAARPAREVLRKRGFRLQLSLARFAAANVRAAAAAEGHAGVAWGLPALRPGWGWVMPRDSYVPE 300
            A W+LA KCC+AAH+FGPQHRYCL AI RLCR DVRE ARPAR VLR +GFRLQLSL R AA  VR  AA EG A VAWGLP   P    V+P DSYVPE
Sbjct:  979 AAWLLADKCCVAAHMFGPQHRYCLRAIGRLCREDVRETARPARAVLRSQGFRLQLSLTRLAADKVRGEAAKEGKASVAWGLPDAPPAAQHVLPFDSYVPE 1078
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7409.15388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FX89_ECTSI6.570e-3672.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KZZ4_9PHAE1.300e-3570.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7409contigH-paniculata_contig7409:240..1066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_003960.2
Exons2
Model size330
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930907.5105786-CDS-H-paniculata_contig7409:239..3821622930907.5105786-CDS-H-paniculata_contig7409:239..382Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7409 240..382 +
1691481505.332287-CDS-H-paniculata_contig7409:239..3821691481505.332287-CDS-H-paniculata_contig7409:239..382Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7409 240..382 +
1622930907.5269578-CDS-H-paniculata_contig7409:879..10661622930907.5269578-CDS-H-paniculata_contig7409:879..1066Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7409 880..1066 +
1691481505.3526278-CDS-H-paniculata_contig7409:879..10661691481505.3526278-CDS-H-paniculata_contig7409:879..1066Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7409 880..1066 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7409.15388.1prot_H-paniculata_contig7409.15388.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7409 240..1066 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7409.15388.1

>prot_H-paniculata_contig7409.15388.1 ID=prot_H-paniculata_contig7409.15388.1|Name=mRNA_H-paniculata_contig7409.15388.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
AVWVLASKCCIAAHLFGPQHRYCLEAIDRLCRNDVREAARPAREVLRKRG
FRLQLSLARFAAANVRAAAAAEGHAGVAWGLPALRPGWGWVMPRDSYVPE
FMSAPPPRA*
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mRNA from alignment at H-paniculata_contig7409:240..1066+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7409.15388.1 ID=mRNA_H-paniculata_contig7409.15388.1|Name=mRNA_H-paniculata_contig7409.15388.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=827bp|location=Sequence derived from alignment at H-paniculata_contig7409:240..1066+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGTATGGGTTCTGGCGAGCAAGTGTTGCATCGCAGCGCACCTGTTCGG
GCCGCAGCATCGCTATTGCTTGGAGGCAATTGACCGGCTATGTCGGAACG
ACGTCCGAGAAGCTGCCCGGCCCGCTAGAGAGGTTCTCAGAAAGTGAGAG
AGGGAGAGAGACAGATGTCTCGCTTTTATTTTTTCAAGTCAAGTGAGGTC
ATGTTGTGCAGTTAAAAAAACAAAATGGCAACCGGAAACATATACCTGGT
ATATTGCGTAGGCAGCACAAATTACTAGTTGTTTTCTCGTTTGTAATGCG
GGACAAGTCTCGAGTTTTCAGTCTGCACAGTACTATTTTTGAAGCGGGGC
TGTAGTACCTGCGGCGTGGCGTGCTTCGTGTTTACTGCAAATGAATTCCG
AATAAGGATTCCGATATTGTAAAAACTCCTCTACAATGACGATGATATTA
ACATTGGCACGATGACGCCGCACGTGTGTAGAGTTCACTCGCACAGCGCC
TCGAATCGCACACAAACACGCTCTTCCTCGATTCACCCTCCCAACACAAG
CTGCCCGTCCCGCCACGCTACACATCGTCGCCCCTTTTTATTTTTTACCA
ACACAACCGAACGAACGTGGGTTTCTCCAAACAAAATTAGGCGAGGGTTT
CGATTACAGCTGAGCTTGGCCCGCTTTGCTGCCGCCAACGTTAGAGCGGC
TGCTGCGGCAGAGGGGCATGCGGGGGTTGCGTGGGGGCTGCCGGCGCTTC
GGCCTGGGTGGGGTTGGGTGATGCCTCGTGACAGTTACGTGCCTGAGTTC
ATGTCTGCCCCGCCCCCCCGGGCGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig7409:240..1066+

>mRNA_H-paniculata_contig7409.15388.1 ID=mRNA_H-paniculata_contig7409.15388.1|Name=mRNA_H-paniculata_contig7409.15388.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig7409:240..1066+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGTATGGGTTCTGGCGAGCAAGTGTTGCATCGCAGCGCACCTGTTCGG
GCCGCAGCATCGCTATTGCTTGGAGGCAATTGACCGGCTATGTCGGAACG
ACGTCCGAGAAGCTGCCCGGCCCGCTAGAGAGGTTCTCAGAAAGCGGTAT
GGGTTCTGGCGAGCAAGTGTTGCATCGCAGCGCACCTGTTCGGGCCGCAG
CATCGCTATTGCTTGGAGGCAATTGACCGGCTATGTCGGAACGACGTCCG
AGAAGCTGCCCGGCCCGCTAGAGAGGTTCTCAGAAAGCGAGGGTTTCGAT
TACAGCTGAGCTTGGCCCGCTTTGCTGCCGCCAACGTTAGAGCGGCTGCT
GCGGCAGAGGGGCATGCGGGGGTTGCGTGGGGGCTGCCGGCGCTTCGGCC
TGGGTGGGGTTGGGTGATGCCTCGTGACAGTTACGTGCCTGAGTTCATGT
CTGCCCCGCCCCCCCGGGCGTAAGCGAGGGTTTCGATTACAGCTGAGCTT
GGCCCGCTTTGCTGCCGCCAACGTTAGAGCGGCTGCTGCGGCAGAGGGGC
ATGCGGGGGTTGCGTGGGGGCTGCCGGCGCTTCGGCCTGGGTGGGGTTGG
GTGATGCCTCGTGACAGTTACGTGCCTGAGTTCATGTCTGCCCCGCCCCC
CCGGGCGTAA
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