mRNA_H-paniculata_contig7406.15383.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7406.15383.1
Unique NamemRNA_H-paniculata_contig7406.15383.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7406.15383.1 vs. uniprot
Match: A0A6H5L8U1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8U1_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 3.740e-18
Identity = 36/49 (73.47%), Postives = 42/49 (85.71%), Query Frame = 2 
Query:    2 ESVRKDVECFFGVLEGCF*ILKLRILYPEKEDIDNVFFACCTLNNMLHS 148
            ESVRKDVECFFG+L+G F ILKL + YPE+E IDNVFF CC L+NMLH+
Sbjct:   20 ESVRKDVECFFGILKGRFRILKLAMAYPEQERIDNVFFTCCILHNMLHT 68
[Close]
BLAST of mRNA_H-paniculata_contig7406.15383.1 vs. uniprot
Match: A0A6H5L7R0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7R0_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 2.390e-17
Identity = 36/49 (73.47%), Postives = 42/49 (85.71%), Query Frame = 2 
Query:    2 ESVRKDVECFFGVLEGCF*ILKLRILYPEKEDIDNVFFACCTLNNMLHS 148
            ESVRKDVECFFG+++G F ILKL I Y ++EDIDNVFF CC L+NMLHS
Sbjct:   72 ESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHS 120
[Close]
BLAST of mRNA_H-paniculata_contig7406.15383.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 2.820e-17
Identity = 36/49 (73.47%), Postives = 42/49 (85.71%), Query Frame = 2 
Query:    2 ESVRKDVECFFGVLEGCF*ILKLRILYPEKEDIDNVFFACCTLNNMLHS 148
            ESVRKDVECFFG+++G F ILKL I Y ++EDIDNVFF CC L+NMLHS
Sbjct:  117 ESVRKDVECFFGIVKGLFRILKLSIPYHKQEDIDNVFFTCCILHNMLHS 165
[Close]
BLAST of mRNA_H-paniculata_contig7406.15383.1 vs. uniprot
Match: A0A6H5JXJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXJ4_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 6.400e-17
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 2 
Query:    2 ESVRKDVECFFGVLEGCF*ILKLRILYPEKEDIDNVFFACCTLNNMLH 145
            ESVRKDVECFFG+L+G F ILKL + Y E+E IDNVFF CC L+NMLH
Sbjct:   20 ESVRKDVECFFGILKGRFRILKLVMAYHEQERIDNVFFTCCILHNMLH 67
[Close]
BLAST of mRNA_H-paniculata_contig7406.15383.1 vs. uniprot
Match: A0A6H5JMK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK5_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.160e-16
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 2 
Query:    2 ESVRKDVECFFGVLEGCF*ILKLRILYPEKEDIDNVFFACCTLNNMLHS 148
            ESVRKDVECFFG+L+G F ILKLR+ Y  KEDIDN+F  CC L+NMLH+
Sbjct:   25 ESVRKDVECFFGILKGRFRILKLRLGYRSKEDIDNIFSTCCILHNMLHT 73
[Close]
BLAST of mRNA_H-paniculata_contig7406.15383.1 vs. uniprot
Match: A0A6H5L2M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2M7_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 2.230e-16
Identity = 37/68 (54.41%), Postives = 48/68 (70.59%), Query Frame = 2 
Query:    2 ESVRKDVECFFGVLEGCF*ILKLRILYPEKEDIDNVFFACCTLNNMLHS-------QQIGRTGGRRGL 184
            ESVR+DVECFFG+L+G F ILKL IL+ +K  IDN+FF CCT +N+LH+       + +   GGR GL
Sbjct:   10 ESVREDVECFFGILKGRFRILKLGILFQDKNVIDNLFFTCCTSHNVLHAFDGLDELETVEDWGGRAGL 77
[Close]
BLAST of mRNA_H-paniculata_contig7406.15383.1 vs. uniprot
Match: A0A6H5JZL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZL5_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.630e-16
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = 2 
Query:    2 ESVRKDVECFFGVLEGCF*ILKLRILYPEKEDIDNVFFACCTLNNMLHS 148
            ESVRKDVECFFG+L+G F ILKL + Y  +E IDNVFF CC L+NMLH+
Sbjct:   41 ESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHT 89
[Close]
BLAST of mRNA_H-paniculata_contig7406.15383.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 3.530e-16
Identity = 36/49 (73.47%), Postives = 42/49 (85.71%), Query Frame = 2 
Query:    2 ESVRKDVECFFGVLEGCF*ILKLRILYPEKEDIDNVFFACCTLNNMLHS 148
            ESVRKDVECFFG+++G F ILKL I Y ++EDIDNVFF CC L+NMLHS
Sbjct:  358 ESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHS 406
[Close]
BLAST of mRNA_H-paniculata_contig7406.15383.1 vs. uniprot
Match: A0A6H5L135_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L135_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 4.440e-16
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = 2 
Query:    2 ESVRKDVECFFGVLEGCF*ILKLRILYPEKEDIDNVFFACCTLNNMLHS 148
            ESVRKDVECFF +L+G F ILKLR+ Y  KEDIDN+F  CC L+NMLH+
Sbjct:   35 ESVRKDVECFFDILKGRFRILKLRLGYRSKEDIDNIFSTCCILHNMLHT 83
[Close]
BLAST of mRNA_H-paniculata_contig7406.15383.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 5.080e-16
Identity = 34/49 (69.39%), Postives = 41/49 (83.67%), Query Frame = 2 
Query:    2 ESVRKDVECFFGVLEGCF*ILKLRILYPEKEDIDNVFFACCTLNNMLHS 148
            ESVRKDVECFFG+L+GCF I K+ + Y E+E IDNVFF CC L+NMLH+
Sbjct:  300 ESVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHNMLHT 348
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7406.15383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L8U1_9PHAE3.740e-1873.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7R0_9PHAE2.390e-1773.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTC6_9PHAE2.820e-1773.47DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JXJ4_9PHAE6.400e-1772.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMK5_9PHAE1.160e-1671.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2M7_9PHAE2.230e-1654.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZL5_9PHAE2.630e-1669.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU4_9PHAE3.530e-1673.47Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L135_9PHAE4.440e-1669.39Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHI0_9PHAE5.080e-1669.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7406contigH-paniculata_contig7406:11185..11501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size300
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930906.9772418-UTR-H-paniculata_contig7406:11184..112011622930906.9772418-UTR-H-paniculata_contig7406:11184..11201Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7406 11185..11201 +
1691481505.1377447-UTR-H-paniculata_contig7406:11184..112011691481505.1377447-UTR-H-paniculata_contig7406:11184..11201Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7406 11185..11201 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930906.9987388-CDS-H-paniculata_contig7406:11201..115011622930906.9987388-CDS-H-paniculata_contig7406:11201..11501Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7406 11202..11501 +
1691481505.1481638-CDS-H-paniculata_contig7406:11201..115011691481505.1481638-CDS-H-paniculata_contig7406:11201..11501Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7406 11202..11501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7406.15383.1prot_H-paniculata_contig7406.15383.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7406 11202..11501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7406.15383.1

>prot_H-paniculata_contig7406.15383.1 ID=prot_H-paniculata_contig7406.15383.1|Name=mRNA_H-paniculata_contig7406.15383.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
MWSASSASWRAAFESSNSASSTPKKRTSTTSSSHAAPSTTCCTHNRLDVL
EEDADWKGCLFSFFLTSGRLRQKPLSDTSIPKHLYISFNRTELFVPLRGR
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mRNA from alignment at H-paniculata_contig7406:11185..11501+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7406.15383.1 ID=mRNA_H-paniculata_contig7406.15383.1|Name=mRNA_H-paniculata_contig7406.15383.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=317bp|location=Sequence derived from alignment at H-paniculata_contig7406:11185..11501+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGAGCGTACGAAAGGATGTGGAGTGCTTCTTCGGCGTCTTGGAGGGCT
GCTTTTGAATCCTCAAACTCCGCATCCTCTACCCCGAAAAAGAGGACATC
GACAACGTCTTCTTCGCATGCTGCACCCTCAACAACATGCTGCACTCACA
ACAGATTGGACGTACTGGAGGAAGACGCGGACTGGAAAGGGTGTCTTTTT
TCTTTTTTTTTAACCTCCGGAAGGCTAAGGCAAAAACCTCTATCCGATAC
TTCCATACCGAAGCACCTCTACATTTCCTTTAACAGAACAGAGTTATTTG
TTCCTCTGCGGGGTAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig7406:11185..11501+

>mRNA_H-paniculata_contig7406.15383.1 ID=mRNA_H-paniculata_contig7406.15383.1|Name=mRNA_H-paniculata_contig7406.15383.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig7406:11185..11501+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGAGTGCTTCTTCGGCGTCTTGGAGGGCTGCTTTTGAATCCTCAAA
CTCCGCATCCTCTACCCCGAAAAAGAGGACATCGACAACGTCTTCTTCGC
ATGCTGCACCCTCAACAACATGCTGCACTCACAACAGATTGGACGTACTG
GAGGAAGACGCGGACTGGAAAGGGTGTCTTTTTTCTTTTTTTTTAACCTC
CGGAAGGCTAAGGCAAAAACCTCTATCCGATACTTCCATACCGAAGCACC
TCTACATTTCCTTTAACAGAACAGAGTTATTTGTTCCTCTGCGGGGTAGG
ATGTGGAGTGCTTCTTCGGCGTCTTGGAGGGCTGCTTTTGAATCCTCAAA
CTCCGCATCCTCTACCCCGAAAAAGAGGACATCGACAACGTCTTCTTCGC
ATGCTGCACCCTCAACAACATGCTGCACTCACAACAGATTGGACGTACTG
GAGGAAGACGCGGACTGGAAAGGGTGTCTTTTTTCTTTTTTTTTAACCTC
CGGAAGGCTAAGGCAAAAACCTCTATCCGATACTTCCATACCGAAGCACC
TCTACATTTCCTTTAACAGAACAGAGTTATTTGTTCCTCTGCGGGGTAGG
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