mRNA_H-paniculata_contig7401.15377.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7401.15377.1
Unique NamemRNA_H-paniculata_contig7401.15377.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7401.15377.1 vs. uniprot
Match: A0A6H5KEF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEF0_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 9.180e-7
Identity = 23/33 (69.70%), Postives = 26/33 (78.79%), Query Frame = 2 
Query:  140 LGRENCFDGISQFSLMSESTAQATFHKFCEHFA 238
            LG+ NCFD + Q S MS+S AQATFHKFC HFA
Sbjct:   88 LGKGNCFDDVEQLSKMSKSMAQATFHKFCRHFA 120
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BLAST of mRNA_H-paniculata_contig7401.15377.1 vs. uniprot
Match: A0A6H5K872_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K872_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 4.130e-6
Identity = 23/33 (69.70%), Postives = 25/33 (75.76%), Query Frame = 2 
Query:  140 LGRENCFDGISQFSLMSESTAQATFHKFCEHFA 238
            LG+ NCFD + Q S MS S AQATFHKFC HFA
Sbjct:  105 LGKGNCFDDVEQLSKMSISMAQATFHKFCRHFA 137
[Close]
BLAST of mRNA_H-paniculata_contig7401.15377.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 2.670e-5
Identity = 22/33 (66.67%), Postives = 24/33 (72.73%), Query Frame = 2 
Query:  140 LGRENCFDGISQFSLMSESTAQATFHKFCEHFA 238
            LG+ NCFD + Q S MSES AQA FHKFC H A
Sbjct:  140 LGKGNCFDDVEQLSKMSESIAQALFHKFCRHSA 172
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7401.15377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KEF0_9PHAE9.180e-769.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K872_9PHAE4.130e-669.70DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5KSI7_9PHAE2.670e-566.67DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7401contigH-paniculata_contig7401:8680..10551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size249
Cds size147
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7401.15377.1prot_H-paniculata_contig7401.15377.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7401 8780..10551 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930906.592735-UTR-H-paniculata_contig7401:8679..87791622930906.592735-UTR-H-paniculata_contig7401:8679..8779Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7401 8680..8779 -
1691481505.0159972-UTR-H-paniculata_contig7401:8679..87791691481505.0159972-UTR-H-paniculata_contig7401:8679..8779Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7401 8680..8779 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930906.608876-CDS-H-paniculata_contig7401:8779..87941622930906.608876-CDS-H-paniculata_contig7401:8779..8794Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7401 8780..8794 -
1691481505.025172-CDS-H-paniculata_contig7401:8779..87941691481505.025172-CDS-H-paniculata_contig7401:8779..8794Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7401 8780..8794 -
1622930906.6285346-CDS-H-paniculata_contig7401:10419..105511622930906.6285346-CDS-H-paniculata_contig7401:10419..10551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7401 10420..10551 -
1691481505.0335577-CDS-H-paniculata_contig7401:10419..105511691481505.0335577-CDS-H-paniculata_contig7401:10419..10551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7401 10420..10551 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7401.15377.1

>prot_H-paniculata_contig7401.15377.1 ID=prot_H-paniculata_contig7401.15377.1|Name=mRNA_H-paniculata_contig7401.15377.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=49bp
KTKENRRGRPYCVLGLVSLARRKRWFLSAEEDVAGRWCIPVELKVLTG*
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mRNA from alignment at H-paniculata_contig7401:8680..10551-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7401.15377.1 ID=mRNA_H-paniculata_contig7401.15377.1|Name=mRNA_H-paniculata_contig7401.15377.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1872bp|location=Sequence derived from alignment at H-paniculata_contig7401:8680..10551- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGACTAAAGAGAATCGGCGTGGGCGACCATACTGCGTTCTCGGCCTAGT
AAGCTTAGCGAGGAGGAAGAGGTGGTTCCTCTCTGCAGAGGAGGACGTCG
CAGGACGCTGGTGCATCCCAGTTGAGCTGAAGGTGGGTCGATGTGTCTAG
CTTGACAACTGTGCAGGATGGCATTAAGTTATTCACGTTTACCTACCTCA
GTCTGCAGTCATGTCTGTACGTGGTTGCGCGACAACACAAGCTGCAGACG
AATGCTTGCATCTTTTTTCGCAGTGCTCATTGCAACGCACCTGTTGCTTA
GTTACGGTATGTTAGATCTAACAGTGTCTGCAAGTGAGTCTTTACATTTA
CAAACTTTAAAAGTCTTATAGGCTCATCAAGCTCAAGCAATACTGCACCA
AAACGAACTTAAGTCTTACTACAAACTTGATAATAAATCACACAAAAAAT
ATTCAAAGCCAAATTAACGGCAGTTTTGTTGCCTTTAATTATCGAAAAGC
AACATTAGTCTTGATTATTTATTTATTTATTTATTTATTTATTTAGCTGT
GTGGCTAAAGTAATAGCCTGGTCATGTTACGGTAATACCGTGGATCCTAT
CGTTCTTAAGTTGGCGAATGATGTAGCACTTAATCTGACGGTTGAAATGT
TTCATCCCCCCTCCCCCAGAAAAATACGAATACTTGCAAACGTTTTTCAC
AATAAACTGAAAATATTCGCCTGAACTTCAAAATTAGGCCGTGTGTGTCA
TGTGCCCCGGAACATCCACGACTGCTAATAATACCCGTAAATCGAATGGA
TAAGGGTGGATACTATATTCTATGCGTCCGTTCATTCTGAAACTCAGGCG
AACACTTTCAGTTTTTTTTTTATGAAAACCATTTGCCAAGTATTCGTATT
TGTCCGGGGGGGTGAAATGTTGCGCCGCCCTGACAAATACGAATGGAGCA
TTCGCAACTATCTCGAACTATTACTATTTTTCTTGGGTAAATCACGTATT
TATTCGTTTACAAGTCTGTGAGTGGTCACTCTACAGGTGGTCGTATACCC
GGCGAATAGTCACACATGCAGGTGCTGTTTGTTTTCCGGATGGTACTGCA
TAGGTTGAATGCTGTATGTGTCCGAGCTTTTCGACGGTTCAGTGTGTATC
GGGTACAAGGCATATTATTCGCGTCACATGGACATCTGACCCAACTCAAA
CAGATACGGTACTCGTTCCAGATTTCTCGTATTTATTTCGTGTCTTGTAT
TCGTAGTAGTCCGGGGCGTGAAATGTCGCACAATCTCCCTGCACAACACC
GCTGAGAGAGGACTGTCCTGTGGTACGCTTTACAGTCTCTACAGCCACCT
CCCTCGATCGAATTACAGATATTGCTCTCTGCAGCGCAGGCTGTCTATGT
TCGTCCCCCGCCATTAATATTGTGATGCTGTTCGGCATTGCATGCCGAGA
CTACTCCGTAAGCACAGACAGTCCGGGATCTCGTGGACTATGGGTAGGTA
GGGTTCGCAATGAAAATATGGGATGGTACCCTTGCGCAGGTGTCCAACCA
CCTCGCGAACGGATGGTCCTAGAGTCGGCTAGCGTACAAGATTAGCAAGT
GTGCCAGGTGTGTGTAACGTTGCTCGTGTTTTTCAACCAATGGTCAACTA
TCTGTCATGATCGGTCATATCAGCCCACGTCTTGAGCCAAGCGAAACCTA
ACATGTTTAGCGCGCGCGCGCGCATGTGTGTGTGTGTGTGTTCTCGCTTC
CCTTCAGGTACTGACTGGGTAGGGAAAACTGCTTCGACGGCATTTCCCAG
TTCTCCCTCATGAGCGAGTCGACGGCTCAAGCCACGTTCCACAAGTTCTG
CGAGCACTTCGCGTTAATAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig7401:8680..10551-

>mRNA_H-paniculata_contig7401.15377.1 ID=mRNA_H-paniculata_contig7401.15377.1|Name=mRNA_H-paniculata_contig7401.15377.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=294bp|location=Sequence derived from alignment at H-paniculata_contig7401:8680..10551- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGACTAAAGAGAATCGGCGTGGGCGACCATACTGCGTTCTCGGCCTAGT
AAGCTTAGCGAGGAGGAAGAGGTGGTTCCTCTCTGCAGAGGAGGACGTCG
CAGGACGCTGGTGCATCCCAGTTGAGCTGAAGAAGACTAAAGAGAATCGG
CGTGGGCGACCATACTGCGTTCTCGGCCTAGTAAGCTTAGCGAGGAGGAA
GAGGTGGTTCCTCTCTGCAGAGGAGGACGTCGCAGGACGCTGGTGCATCC
CAGTTGAGCTGAAGGTACTGACTGGGTAGGTACTGACTGGGTAG
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