mRNA_H-paniculata_contig7399.15374.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7399.15374.1
Unique NamemRNA_H-paniculata_contig7399.15374.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7399.15374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7399contigH-paniculata_contig7399:9434..10089 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size263
Cds size237
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7399.15374.1prot_H-paniculata_contig7399.15374.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7399 9442..10071 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930905.974731-UTR-H-paniculata_contig7399:9433..94411622930905.974731-UTR-H-paniculata_contig7399:9433..9441Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7399 9434..9441 +
1691481504.7406282-UTR-H-paniculata_contig7399:9433..94411691481504.7406282-UTR-H-paniculata_contig7399:9433..9441Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7399 9434..9441 +
1622930906.027181-UTR-H-paniculata_contig7399:10071..100891622930906.027181-UTR-H-paniculata_contig7399:10071..10089Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7399 10072..10089 +
1691481504.7708762-UTR-H-paniculata_contig7399:10071..100891691481504.7708762-UTR-H-paniculata_contig7399:10071..10089Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7399 10072..10089 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930905.9950337-CDS-H-paniculata_contig7399:9441..96551622930905.9950337-CDS-H-paniculata_contig7399:9441..9655Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7399 9442..9655 +
1691481504.7523117-CDS-H-paniculata_contig7399:9441..96551691481504.7523117-CDS-H-paniculata_contig7399:9441..9655Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7399 9442..9655 +
1622930906.0126166-CDS-H-paniculata_contig7399:10048..100711622930906.0126166-CDS-H-paniculata_contig7399:10048..10071Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7399 10049..10071 +
1691481504.7609463-CDS-H-paniculata_contig7399:10048..100711691481504.7609463-CDS-H-paniculata_contig7399:10048..10071Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7399 10049..10071 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7399.15374.1

>prot_H-paniculata_contig7399.15374.1 ID=prot_H-paniculata_contig7399.15374.1|Name=mRNA_H-paniculata_contig7399.15374.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
MRVGWWGLRSFCTNPSPELGHHLEFGNWRFGNDMQESGESHEKAGGMRGR
LQSVGTRSPTWCTSSLGETTRGEAVNTR*
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mRNA from alignment at H-paniculata_contig7399:9434..10089+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7399.15374.1 ID=mRNA_H-paniculata_contig7399.15374.1|Name=mRNA_H-paniculata_contig7399.15374.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=656bp|location=Sequence derived from alignment at H-paniculata_contig7399:9434..10089+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATGGTTAATGCGTGTGGGCTGGTGGGGGTTGAGGTCATTCTGTACAAAC
CCATCGCCTGAACTCGGTCACCATCTGGAGTTTGGAAATTGGCGGTTCGG
AAACGACATGCAAGAATCCGGAGAGTCTCATGAAAAAGCTGGCGGCATGC
GTGGGCGTCTTCAGTCAGTCGGCACGAGGAGTCCAACGTGGTGTACGAGC
TCATTAGGCGAAACGACACGAGGTGGGACGAGTTTGGTTACTTATATATT
GATAAATTACAATTTCCTGTTACTTGCGAATATATATTAAATAAAACGTG
AAAAACGCCACAAAAGTCAACGTCTTGTTCGTGCAACGTTGTAAGCTATC
TTCGCAGTGTTGTTTTCAGCCGGGTATTCGAATGTGAGAACGTTTCGCGC
GCATTTTTCCTGTTCTGGCCTCACCTACCGTGTTGTAAGGCGTAGACCTC
CATTTTGTCGGGGGCTTTGTTGAGTCCTTGTTGAGTGGACATTGCATGTC
CATACGGTATGGCAGGGTCAATGTTTCAGTGCATTTTCGGATATATGTAG
TGCAGTATGTTCAGGCTAATACATCCACTAGTATATATTCCCTTAACCCG
TAATCTGTCAAGCAGGTGAAGCAGTCAACACAAGATGATGCTCCGATTTC
TGTAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig7399:9434..10089+

>mRNA_H-paniculata_contig7399.15374.1 ID=mRNA_H-paniculata_contig7399.15374.1|Name=mRNA_H-paniculata_contig7399.15374.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig7399:9434..10089+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTGTGGGCTGGTGGGGGTTGAGGTCATTCTGTACAAACCCATCGCC
TGAACTCGGTCACCATCTGGAGTTTGGAAATTGGCGGTTCGGAAACGACA
TGCAAGAATCCGGAGAGTCTCATGAAAAAGCTGGCGGCATGCGTGGGCGT
CTTCAGTCAGTCGGCACGAGGAGTCCAACGTGGTGTACGAGCTCATTAGG
CGAAACGACACGAGATGCGTGTGGGCTGGTGGGGGTTGAGGTCATTCTGT
ACAAACCCATCGCCTGAACTCGGTCACCATCTGGAGTTTGGAAATTGGCG
GTTCGGAAACGACATGCAAGAATCCGGAGAGTCTCATGAAAAAGCTGGCG
GCATGCGTGGGCGTCTTCAGTCAGTCGGCACGAGGAGTCCAACGTGGTGT
ACGAGCTCATTAGGCGAAACGACACGAGGTGAAGCAGTCAACACAAGATG
AGTGAAGCAGTCAACACAAGATGA
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