mRNA_H-paniculata_contig73988.15373.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig73988.15373.1
Unique NamemRNA_H-paniculata_contig73988.15373.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig73988.15373.1 vs. uniprot
Match: A0A6H5LB52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB52_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.570e-24
Identity = 46/65 (70.77%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:    1 TFKDGHFHRPENTITASLWDNSRSALILAGSAMNVWKNMGAIQTSKRSHEAPVTAALYNKHFHQV 195
            +FKD   HRP++TITA+LWD+SRS+L++AGS + VWKN GAIQ+SK SHEAPVTAALYN HFHQ+
Sbjct:   60 SFKDHRMHRPDDTITAALWDHSRSSLVVAGSRLGVWKNKGAIQSSKHSHEAPVTAALYNWHFHQI 124
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BLAST of mRNA_H-paniculata_contig73988.15373.1 vs. uniprot
Match: A0A7S1SW51_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SW51_9CHLO)

HSP 1 Score: 54.3 bits (129), Expect = 2.130e-7
Identity = 23/62 (37.10%), Postives = 36/62 (58.06%), Query Frame = 1 
Query:    1 TFKDGHFHRPENTITASLWDNSRSALILAGSAMNVWKNMGAIQTSKRSHEAPVTAALYNKHF 186
            TF D   +RPENTITA ++DN++  L+   + +  W     I  +  +H APV+  LY+ +F
Sbjct:   44 TFHDDDTYRPENTITAMMYDNTKRWLVTGNTTLKTWPLRSVINKTSGAHSAPVSKVLYSPNF 105
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig73988.15373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LB52_9PHAE1.570e-2470.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1SW51_9CHLO2.130e-737.10Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig73988contigH-paniculata_contig73988:146..364 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size219
Cds size219
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930905.9183633-CDS-H-paniculata_contig73988:145..3641622930905.9183633-CDS-H-paniculata_contig73988:145..364Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig73988 146..364 -
1691481504.7301445-CDS-H-paniculata_contig73988:145..3641691481504.7301445-CDS-H-paniculata_contig73988:145..364Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig73988 146..364 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig73988.15373.1prot_H-paniculata_contig73988.15373.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig73988 146..364 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig73988.15373.1

>prot_H-paniculata_contig73988.15373.1 ID=prot_H-paniculata_contig73988.15373.1|Name=mRNA_H-paniculata_contig73988.15373.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
TFKDGHFHRPENTITASLWDNSRSALILAGSAMNVWKNMGAIQTSKRSHE
APVTAALYNKHFHQVNIPYGTV*
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mRNA from alignment at H-paniculata_contig73988:146..364-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig73988.15373.1 ID=mRNA_H-paniculata_contig73988.15373.1|Name=mRNA_H-paniculata_contig73988.15373.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=219bp|location=Sequence derived from alignment at H-paniculata_contig73988:146..364- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTTTCAAGGATGGCCACTTTCATCGCCCGGAGAACACCATAACGGCGTC
CCTCTGGGACAACAGTAGGAGTGCCCTCATCCTCGCTGGCAGCGCCATGA
ACGTCTGGAAAAACATGGGAGCCATCCAGACGAGCAAAAGGAGTCACGAG
GCCCCTGTCACTGCGGCGTTATACAACAAGCATTTTCACCAGGTCAACAT
TCCGTACGGGACGGTGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig73988:146..364-

>mRNA_H-paniculata_contig73988.15373.1 ID=mRNA_H-paniculata_contig73988.15373.1|Name=mRNA_H-paniculata_contig73988.15373.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig73988:146..364- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTTTCAAGGATGGCCACTTTCATCGCCCGGAGAACACCATAACGGCGTC
CCTCTGGGACAACAGTAGGAGTGCCCTCATCCTCGCTGGCAGCGCCATGA
ACGTCTGGAAAAACATGGGAGCCATCCAGACGAGCAAAAGGAGTCACGAG
GCCCCTGTCACTGCGGCGTTATACAACAAGCATTTTCACCAGGTCAACAT
TCCGTACGGGACGGTGTAGACTTTCAAGGATGGCCACTTTCATCGCCCGG
AGAACACCATAACGGCGTCCCTCTGGGACAACAGTAGGAGTGCCCTCATC
CTCGCTGGCAGCGCCATGAACGTCTGGAAAAACATGGGAGCCATCCAGAC
GAGCAAAAGGAGTCACGAGGCCCCTGTCACTGCGGCGTTATACAACAAGC
ATTTTCACCAGGTCAACATTCCGTACGGGACGGTGTAG
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