mRNA_H-paniculata_contig7388.15360.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig7388.15360.1 vs. uniprot
Match: A0A6H5JNL3_9PHAE (AraC_E_bind domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNL3_9PHAE) HSP 1 Score: 372 bits (954), Expect = 1.270e-118 Identity = 175/351 (49.86%), Postives = 231/351 (65.81%), Query Frame = 2
Query: 155 RSSEPFLANIFGVFEDPWGVTWSISDSTNTIEDFPKELERTVMPFVSVKNAPGFLDFLGEVFGAEPAMEAAKEPGGKIMCAEMIFNGGNIMVGDHCGEDVDRTDAAITISHEVAPGRAEDVAKAFDNEGGNIVDPPSMQFWGQVWGRCKDKFGQSWGINEPMIGSLKSNADMEVDIRIGEKFXXXXXXSEVDAPQLFCFGEVHTCLAKPSEIKTIMETSLPAAFAEAGKRGLKMVGPPLSGYYKWESKEGGEARLTTGPMVVRGAST---EEVAGGETGFGVRSLCGVKSVMVMHVGPYDELIKCYEATFEWISAKGYESKMPAVEMYENNPKDTEPGKLRTKIFVPIVPK 1198
+ +E F FGV++DP+G WS+S+STNTIED PK+L R ++PFVSV++ ++ F+ + GAE AK+P GKIMCAE+ NGG IMVGDHCGED +T+A++TISHEV A +AK+F + GG +++ SMQFWGQVWGRCKD FGQ WG+ E G SN DM D+ IG K+ + D P ++C+G + T A I +LPAAFA A GL M GPP S YY W+ GG + T GP V G ++ ++V G + G GVR+ G K V +H GPYD+L+KCY+ATFEW+ KGYES+MP E+YEN+PKDT P KL+TK+ +PIV K
Sbjct: 57 KMAEQFWGATFGVYQDPFGQIWSVSNSTNTIEDVPKKLARKIIPFVSVRDCSAYMTFVTDALGAEVVYPPAKDPTGKIMCAELKINGGIIMVGDHCGEDASKTEASMTISHEVGKDEAGPLAKSFKDNGGEVLEEVSMQFWGQVWGRCKDPFGQPWGLCEVQTGPTTSNEDMAKDMEIGAKYDWRYTWAVEDMPTVYCYGAMSTSEATGPAISEETNKTLPAAFAGAAAAGLAMAGPPASAYYTWDPSPGGTTKFTCGPSVAGGGASALMKDVDGDDNGLGVRTAGGCKCVTTLHTGPYDQLMKCYKATFEWVETKGYESRMPVFELYENDPKDTPPEKLKTKVCIPIVAK 407
BLAST of mRNA_H-paniculata_contig7388.15360.1 vs. uniprot
Match: A0A6H5L888_9PHAE (VOC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L888_9PHAE) HSP 1 Score: 360 bits (924), Expect = 2.550e-113 Identity = 174/351 (49.57%), Postives = 228/351 (64.96%), Query Frame = 2
Query: 155 RSSEPFLANIFGVFEDPWGVTWSISDSTNTIEDFPKELERTVMPFVSVKNAPGFLDFLGEVFGAEPAMEAAKEPGGKIMCAEMIFNGGNIMVGDHCGEDVDRTDAAITISHEVAPGRAEDVAKAFDNEGGNIVDPPSMQFWGQVWGRCKDKFGQSWGINEPMIGSLKSNADMEVDIRIGEKFXXXXXXSEVDAPQLFCFGEVHTCLAKPSEIKTIMETSLPAAFAEAGKRGLKMVGPPLSGYYKWESKEGGEARLTTGPMVVRGAST---EEVAGGETGFGVRSLCGVKSVMVMHVGPYDELIKCYEATFEWISAKGYESKMPAVEMYENNPKDTEPGKLRTKIFVPIVPK 1198
+ +E F FGV++DP+G WS+S+STNTIED PKEL R ++PFVSV++ ++ FL + GAE AK+P GKIMCAEM NGG IM+GDHC +D +T+A++TI++EV A +AK+F + GG +++ SMQFWGQVWGRC D FGQ + E G SN DM D+ IG K+ D P ++C+G + T A I + +LPAAFA A GL M GPP S YY W+S GG + T GP V G ++ ++V G + G GVR+ G K V +H GPYDEL KCYEATFEW+ AKGYES+MP E+YEN+PKDT P KL+TK+ +PIV K
Sbjct: 118 KMAEQFWGATFGVYQDPFGQIWSVSNSTNTIEDVPKELARKIIPFVSVRDCSAYMTFLTDALGAEVVYPPAKDPTGKIMCAEMKINGGIIMLGDHCSKDASKTEASMTIAYEVGKDEAGPLAKSFKDNGGEVLEEVSMQFWGQVWGRCHDPFGQPXXLCEVQEGPPPSNEDMAKDMEIGAKYNWRYNWVVEDMPIVYCYGAMSTSAANGPAISEEINKTLPAAFAGAAAAGLAMAGPPASAYYTWDSSPGGTTKFTCGPSVAGGGASALMKDVNGDDIGLGVRTAGGCKCVTTLHTGPYDELKKCYEATFEWVEAKGYESRMPVFELYENDPKDTPPEKLKTKVCIPIVAK 468
BLAST of mRNA_H-paniculata_contig7388.15360.1 vs. uniprot
Match: D8LJ97_ECTSI (AraC family transcriptional regulator n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ97_ECTSI) HSP 1 Score: 279 bits (713), Expect = 7.130e-85 Identity = 131/269 (48.70%), Postives = 173/269 (64.31%), Query Frame = 2
Query: 401 MIFNGGNIMVGDHCGEDVDRTDAAITISHEVAPGRAEDVAKAFDNEGGNIVDPPSMQFWGQVWGRCKDKFGQSWGINEPMIGSLKSNADMEVDIRIGEKFXXXXXXSEVDAPQLFCFGEVHTCLAKPSEIKTIMETSLPAAFAEAGKRGLKMVGPPLSGYYKWESKEGGEARLTTGPMVVRGAST---EEVAGGETGFGVRSLCGVKSVMVMHVGPYDELIKCYEATFEWISAKGYESKMPAVEMYENNPKDTEPGKLRTKIFVPIVPK 1198
M NGG +M+GDHC +D +T+A++T+S+EV A +AK+F + GG +++ SMQFWGQVWGRCKD FGQ WG+ E G SN DM D+ IG K+ D P ++C+G + T A I + +LPAAFA A GL M GPP S +Y W+ GG + T+GP V G ++ ++V G + G GVR+ G K V +H GPYDEL KCYEATFEW+ AKGYES+MP E+YEN+PKDT P KL+TK+ +PIV K
Sbjct: 1 MKINGGIVMLGDHCSKDASKTEASMTVSYEVRKDEAGPLAKSFKDNGGEVLEEVSMQFWGQVWGRCKDPFGQPWGLCEVQEGPAPSNEDMAKDMEIGAKYDWHYTWVVEDMPTVYCYGAMSTSAANTPAISEETKKTLPAAFAGAAAAGLAMAGPPASAFYTWDPSPGGTTKFTSGPSVAGGGASALMKDVDGDDNGLGVRTAGGCKCVTTLHTGPYDELKKCYEATFEWVEAKGYESRMPVFELYENDPKDTPPEKLKTKVCIPIVAK 269
BLAST of mRNA_H-paniculata_contig7388.15360.1 vs. uniprot
Match: UPI000F83A009 (GyrI-like domain-containing protein n=1 Tax=Sulfuriflexus mobilis TaxID=1811807 RepID=UPI000F83A009) HSP 1 Score: 70.9 bits (172), Expect = 1.120e-10 Identity = 42/119 (35.29%), Postives = 60/119 (50.42%), Query Frame = 2
Query: 836 GKRGLKMVGPPLSGYYKWESKEGGEARLTTG-PMVVRGASTEEVAGGETGFGVRSLCGVKSVMVMHVGPYDELIKCYEATFEWISAKGYESKMPAVEMYENNPKDTEPGKLRTKIFVPI 1189
G+ + GPP + YY + ++ + G P+ + + ET G KSV +H+GPY ++ Y A F+WI GYE+ A EMY N+P T P KL TKIF+PI
Sbjct: 43 GEVQAQPAGPPFAIYYNMDMQD---LDVEFGFPISTNLTGRDNIHSNETPSG-------KSVSCLHIGPYSDVESTYNALFKWIKDSGYEATGVAYEMYLNDPDQTPPEKLETKIFLPI 151
BLAST of mRNA_H-paniculata_contig7388.15360.1 vs. uniprot
Match: A0A0N1BQK4_9PROT (VOC domain-containing protein n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A0N1BQK4_9PROT) HSP 1 Score: 55.8 bits (133), Expect = 1.580e-5 Identity = 38/126 (30.16%), Postives = 59/126 (46.83%), Query Frame = 2
Query: 278 VMPFVSVKNAPGFLDFLGEVFGAEPAMEAAKEPGGKIMCAEMIFNGGNIMVGDHCGEDVDRTD------AAITISHEVAPGRAEDVAKAFDNEGGNIVDPPSMQFWGQVWGRCKDKFGQSWGINEP 637
V+P + V A ++F + FGA ME E G +++ A++I NGG IM+ D E T A +T+ H P A+A + P M FWG +G+ +D +G W ++ P
Sbjct: 14 VIPHLVVTGAREAIEFYIKAFGATKVMEMPAEDGKRLLHAQLIINGGTIMMCDDFPEYRGGTPTEYPKHAPVTL-HMAVPDIDAAFAQAVAAGATEAMKPADM-FWGDRYGQVRDPYGHLWSLSTP 137
BLAST of mRNA_H-paniculata_contig7388.15360.1 vs. uniprot
Match: A0A3D2W058_9PROT (VOC domain-containing protein n=1 Tax=Hyphomonadaceae bacterium TaxID=2026748 RepID=A0A3D2W058_9PROT) HSP 1 Score: 55.5 bits (132), Expect = 2.150e-5 Identity = 38/121 (31.40%), Postives = 57/121 (47.11%), Query Frame = 2
Query: 284 PFVSVKNAPGFLDFLGEVFGAEPAMEAAKEPGGKIMCAEMIFNGGNIMVGDHC---GEDVDRTDAAITISHEVAPGRAEDVAK--AFDNEGG-NIVDPPSMQFWGQVWGRCKDKFGQSWGI 628
P++ VK A ++F + F A+ M E ++M A++I NGG IM+ D GE ++ S + +D K A E G +V P + QFWG +G +D FG W I
Sbjct: 18 PYLKVKGAKQAIEFYKKAFNAKTRMVMEAEDKKRLMHADLIINGGEIMLSDEFEEFGEPATVPPPSVKTSTVSIHLQVDDADKWWARATEAGCKVVMPLADQFWGDRFGMVRDPFGHVWSI 138
BLAST of mRNA_H-paniculata_contig7388.15360.1 vs. uniprot
Match: A0A3G8WVP6_9SPHI (VOC family protein n=1 Tax=Pedobacter sp. G11 TaxID=2482728 RepID=A0A3G8WVP6_9SPHI) HSP 1 Score: 54.3 bits (129), Expect = 3.260e-5 Identity = 38/115 (33.04%), Postives = 56/115 (48.70%), Query Frame = 2
Query: 272 RTVMPFVSVKNAPGFLDFLGEVFGAEPAMEAAKEPGGKIMCAEMIFNGGNIMVGDHCGEDVDRTDAAITISHEVAPGRAEDVAKAFDNEGGNIVDPPSMQF---------WGQVW 589
+T+MP++ VK+A F+DFL EVF A+ + +E G IM AE +F GG IM + +D A + I +P KA N +I +P ++ WG VW
Sbjct: 8 QTIMPYLVVKDAEKFIDFLKEVFNADIKLIVPRE-NGSIMHAEAVFEGGTIMFAN-ANDDFLPFPAGMFIH---SPNAITFYDKALKNAATSIQEPAQREYGLSAGFEDAWGNVW 117
BLAST of mRNA_H-paniculata_contig7388.15360.1 vs. uniprot
Match: A0A1H0W5J8_9SPHI (Uncharacterized conserved protein PhnB, glyoxalase superfamily n=2 Tax=Mucilaginibacter TaxID=423349 RepID=A0A1H0W5J8_9SPHI) HSP 1 Score: 54.3 bits (129), Expect = 3.420e-5 Identity = 42/133 (31.58%), Postives = 69/133 (51.88%), Query Frame = 2
Query: 242 TIEDFPKELERTVMPFVSVKNAPGFLDFLGEVFGAEPAMEAAKEPGGKIMCAEMIFNGGNIMVGDHCGEDVDRTDAAITISHEVAPGRAEDVAKAFDNEGGNIVDPPSMQFWGQVWGRCKDKFGQSWGINEPM 640
TI++ P+ +R +MP++ VK+AP F+ F+ VFGA+ + ++ +M AE+ G IM D E +A + I + E KA +N G + V P+ Q +G+ G KD FG +W + P+
Sbjct: 3 TIKNIPETYQR-IMPYLIVKDAPAFITFMQNVFGAKEQYKQMRDEK-HVMHAEISIQGSTIMFCDST-ETYLPQNAGLFIYVDSCD---ETYKKALEN-GASSVTEPADQPYGRSSG-IKDPFGNTWWLTNPL 127 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7388.15360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig7388.15360.1 >prot_H-paniculata_contig7388.15360.1 ID=prot_H-paniculata_contig7388.15360.1|Name=mRNA_H-paniculata_contig7388.15360.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=377bp MVKRIQTGLDSLLSSVPPRSSEPFLANIFGVFEDPWGVTWSISDSTNTIEback to top mRNA from alignment at H-paniculata_contig7388:5341..10933- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig7388.15360.1 ID=mRNA_H-paniculata_contig7388.15360.1|Name=mRNA_H-paniculata_contig7388.15360.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5593bp|location=Sequence derived from alignment at H-paniculata_contig7388:5341..10933- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig7388:5341..10933- >mRNA_H-paniculata_contig7388.15360.1 ID=mRNA_H-paniculata_contig7388.15360.1|Name=mRNA_H-paniculata_contig7388.15360.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2262bp|location=Sequence derived from alignment at H-paniculata_contig7388:5341..10933- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |