mRNA_H-paniculata_contig7388.15359.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig7388.15359.1 vs. uniprot
Match: D8LEQ9_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEQ9_ECTSI) HSP 1 Score: 293 bits (749), Expect = 4.270e-92 Identity = 148/264 (56.06%), Postives = 193/264 (73.11%), Query Frame = 1
Query: 160 SSMTTLAAVASMLATATIT--QALRVTMPSEGMTVVAGSSYPVEWTGSSPDARFDIDLTYCGSYSFCFDD-NCGFLLESLCMEGV-EGCALDASGAYDVIMPEPLGGTSSNGYKVRIAEVGGSFDSVRCSDDFYLVASTDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTI---EGTGDCGGWVGSICDKPDIGCKDTTGNYDIMMPSIAKSGMYKIRVGLFGDDSVYACSEAFEVLPTVGD 930
SS+ +L A+A +L TIT +AL+V P+ TVV+G Y V W G+S D RF+IDL YCGSYS+CF++ CGF L ++C EG GC A + V PEPLGG S+ GY++RIAEVG D+ RCSDDFYL++S D P VG G P+I VV+PTA+++AI+GE YTVEFDYDNGFG +GRFKIDLY +G GDCG WV S+CDKPD+GC D+ G+Y++++P+ ++ GMYKIRVGLFGDD++YACS +FEV+ D
Sbjct: 3 SSVASLVALAGILGHTTITSTEALQVLTPAVAETVVSGRPYIVSWNGASADDRFEIDLHYCGSYSYCFEEAECGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRIAEVGS--DTYRCSDDFYLMSSADAPAVGEDGGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKALGEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPTDSEDGMYKIRVGLFGDDTIYACSPSFEVVAAAAD 264
BLAST of mRNA_H-paniculata_contig7388.15359.1 vs. uniprot
Match: A0A6H5KPZ5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ5_9PHAE) HSP 1 Score: 286 bits (731), Expect = 1.420e-89 Identity = 140/257 (54.47%), Postives = 186/257 (72.37%), Query Frame = 1
Query: 160 SSMTTLAAVASMLA-TATITQALRVTMPSEGMTVVAGSSYPVEWTGSSPDARFDIDLTYCGSYSFCFDD--NCGFLLESLCMEGVEGCALDASGAYDVIMPEPLGGTSSNGYKVRIAEVGGSFDSVRCSDDFYLVASTDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTIEGTGDCGGWVGSICDKPDIGCKDTTGNYDIMMPSIAKSGMYKIRVGLFGDDSVYACSEAFEVLPT 921
SS+ L A+A +L T T T+ALRV P+ +V +G Y V W G+ D RF++DL YCGSYSFCF + +CGF + ++C E + C + + V PEP+ G S+NGY+VRI+EVG D+ RCS+DFYLVAS DV G G P++ VV+P A ++A++GE YTVEFDYDNGFG +GRFKIDLY EG GDCG WV S+CDKPD+GC+D+ G+YD+++P+ ++ GMYKIRVGLFGDDS+YACS +FE+ T
Sbjct: 3 SSVAFLTALAGVLGNTITSTEALRVLTPAVAESVASGRPYVVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQDDQSSQVTFPEPVAGHSNNGYRVRISEVGT--DNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYKIRVGLFGDDSIYACSPSFEITTT 257
BLAST of mRNA_H-paniculata_contig7388.15359.1 vs. uniprot
Match: D7FN59_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN59_ECTSI) HSP 1 Score: 275 bits (704), Expect = 8.790e-86 Identity = 141/256 (55.08%), Postives = 183/256 (71.48%), Query Frame = 1
Query: 160 SSMTTLAAVASMLATA-TITQALRVTMPSEGMTVVAGSSYPVEWTGSSPDARFDIDLTYCGSYSFCFD--DNCGFLLESLCMEGVEGCALDASGAYDVIMPEPLGGTSSNGYKVRIAEVGGSFDSVRCSDDFYLVASTDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTIEGTGDCGGWVGSICDKPDIGCKDTTGNYDIMMPSIAKSGMYKIRVGLFGDDSVYACSEAFEVLP 918
SS+ +AA+ ML T T+ALRV P+ TVV+ Y V W G+SPD RF+IDL YCGSYSFCF+ D CGF + +LC EG + C V +PEP+ G S++GY+VRI +VG ++ RCSD+FYL++S D G P++ VV+P++ ++A++G YTVEFDYDNGFG GRFKIDLY EGTGDCG WV S+CDKPD+GC DT G+YDI++P ++ GMYKIRVGLFGDDSV+ACS +FEV+P
Sbjct: 3 SSVAFIAALTGMLGNIITDTEALRVLTPAVAETVVSDMPYIVSWKGASPDDRFEIDLHYCGSYSFCFEEADECGFWVTNLCAEGDDACMNQDDLMSQVTLPEPVDGHSNSGYRVRIGKVGT--ETFRCSDEFYLMSSADASDQDG---PTMEVVAPSSGALAVAGAVYTVEFDYDNGFGAQQGRFKIDLYHAEGTGDCGDWVSSVCDKPDVGCHDTEGDYDIVIPRDSEGGMYKIRVGLFGDDSVFACSASFEVVP 253
BLAST of mRNA_H-paniculata_contig7388.15359.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI) HSP 1 Score: 259 bits (663), Expect = 2.020e-79 Identity = 126/232 (54.31%), Postives = 165/232 (71.12%), Query Frame = 1
Query: 220 ALRVTMPSEGMTVVAGSSYPVEWTGSSPDARFDIDLTYCGSYSFCFDDNCGFLLESLCMEGVEGCALDASGAYDVIMPEPLGGTSSNGYKVRIAEVGGSFDSVRCSDDFYLVASTDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTIEGTGDCGGWVGSICDKPDIGCKDTTGNYDIMMPSIAKSGMYKIRVGLFGDDSVYACSEAFEVL 915
AL V P+EG VVA +Y VEWTG+ + R++IDL YCGS C +D CG + +LC G +GC D G YD++MPEP+ GTS +GYKVR+A+V DS CSD+FYL+A + P G G P + V SP++ A +GEEYTVEFDYDNG G++VGRF IDLY+ G+GDCG ++ ++CDKP IGCKD+ G+YD+ +P A++GMY IRVG F DDSVY CS+ FE+L
Sbjct: 7 ALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGS--MCMEDECGDWVTALCPYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVADVDDD-DSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEIL 234
BLAST of mRNA_H-paniculata_contig7388.15359.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE) HSP 1 Score: 252 bits (643), Expect = 1.100e-76 Identity = 122/235 (51.91%), Postives = 161/235 (68.51%), Query Frame = 1
Query: 211 ITQALRVTMPSEGMTVVAGSSYPVEWTGSSPDARFDIDLTYCGSYSFCFDDNCGFLLESLCMEGVEGCALDASGAYDVIMPEPLGGTSSNGYKVRIAEVGGSFDSVRCSDDFYLVASTDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTIEGTGDCGGWVGSICDKPDIGCKDTTGNYDIMMPSIAKSGMYKIRVGLFGDDSVYACSEAFEVL 915
+ AL V P+ G VV+ +Y VEW+G+ + RF+IDL YC S C +D CG + +LC G +GC D G YD++MPEP+ GTS +GYKVR+A+V DS CSD+FYL+A D P G P + V SP+ A +GEEYTVEFDYDNG G++VGRF IDLY G+GDCG ++ ++CDKP IGCKD+ G+YD+ +P A++GMY IRVG F D+SVY CS+ FE+L
Sbjct: 17 VASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNS--MCMEDECGEWVTALCPYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVADVDDE-DSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEIL 247
BLAST of mRNA_H-paniculata_contig7388.15359.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE) HSP 1 Score: 249 bits (637), Expect = 1.150e-75 Identity = 125/238 (52.52%), Postives = 167/238 (70.17%), Query Frame = 1
Query: 220 ALRVTMPSEGMTVVAGSSYPVEWTGSSPDARFDIDLTYCGSYSFCFDDNCGFLLESLCMEGVEGCALDASGAYDVIMPEPLGGTSSNGYKVRIAEVGGSFDSVRCSDDFYLVASTDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTIEGTGDCGGWVGSICDKPDIGCKDTTGNYDIMMPSIAKSGMYKIRVGLFGDDSVYACSEAFEVLPTVGDD 933
AL+V+ PS+G+TV+A +Y VEWTG+S D RF+IDL YCGS C +D+CG + +LC G +GC D G YD++MPEP+ GTS +GYKVR+ ++ D+ CSD+FYL+AS++ P VG P++ V SP + +A + EYTVEFDYDNG G++V RF IDLY +G GDCG +V SICDKP IGCKD+ G+YD+ +P +G YKIRV F DDS+Y+CS F + GDD
Sbjct: 19 ALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGS--MCMEDDCGDWVTALCPYGEDGCP-DNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDA-DCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTI--EEGDD 250
BLAST of mRNA_H-paniculata_contig7388.15359.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI) HSP 1 Score: 237 bits (604), Expect = 6.430e-71 Identity = 123/238 (51.68%), Postives = 157/238 (65.97%), Query Frame = 1
Query: 220 ALRVTMPSEGMTVVAGSSYPVEWTGSSPDARFDIDLTYCGSYSFCFDDNCGFLLESLCMEGVEGCALDASGAYDVIMPEPLGGTSSNGYKVRIAEVGGSFDSVRCSDDFYLVASTDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTIEGTGDCGGWVGSICDKPDIGCKDTTGNYDIMMPSIAKSGMYKIRVGLFGDDSVYACSEAFEVLPTVGDD 933
AL V PS + VVA +Y VEWTG+ RF+IDL +CGS C +D+CG + +LC G EGC D G YD++MPEP+ G S++GYKVR+ +V DS+ CSD FYL+AS D P G + V SP A +GEEYTVEFDYDNG G+ V RF IDLY +G GDCG +V SICDKP IGCKD+ G+YD+ +P+ ++G YKIRVG F D+ +Y CS F ++ GDD
Sbjct: 19 ALEVVTPSADLIVVADRTYTVEWTGAD-SGRFEIDLYHCGS--MCMEDSCGDWVTALCPYGEEGCP-DNEGDYDIVMPEPMSGESNSGYKVRVMDVSDE-DSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMG--GDD 249
BLAST of mRNA_H-paniculata_contig7388.15359.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI) HSP 1 Score: 236 bits (603), Expect = 7.960e-71 Identity = 124/232 (53.45%), Postives = 161/232 (69.40%), Query Frame = 1
Query: 220 ALRVTMPSEGMTVVAGSSYPVEWTGSSPDARFDIDLTYCGSYSFCFDDNCGFLLESLCMEGVEGCALDASGAYDVIMPEPLGGTSSNGYKVRIAEVGGSFDSVRCSDDFYLVASTDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTIEGTGDCGGWVGSICDKPDIGCKDTTGNYDIMMPSIAKSGMYKIRVGLFGDDSVYACSEAFEVL 915
AL V P+ G VVA S+Y VEWTG++ R+DIDL YCGS C +D CG + +LC G +GC D G YDV+MPEP+ GTSS GYKV + + D CS DF L+AST+ P GA ++V SP+ A++G EYTVEFDYDNG G++V RF IDLY+ G+GDCG +V +ICDKP IGCKD+ G+YD+++PS +SGMY IRVG+F DD VY CS++FE++
Sbjct: 19 ALEVVSPAAGDMVVADSAYTVEWTGAT-SGRYDIDLYYCGSV--CMEDECGDWVTALCPYGDDGCP-DTQGDYDVVMPEPMDGTSS-GYKVMVTDSSDESD-YGCSGDFTLIASTEAPDATDMGA-YVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIV 243
BLAST of mRNA_H-paniculata_contig7388.15359.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI) HSP 1 Score: 230 bits (587), Expect = 2.000e-68 Identity = 119/233 (51.07%), Postives = 160/233 (68.67%), Query Frame = 1
Query: 220 ALRVTMPSEGMTVVAGSSYPVEWTGSSPDARFDIDLTYCGSYSFCFDDNCGFLLESLCMEGVEGCALDASGAYDVIMPEPLGGTSSNGYKVRIAEVGGSFDSVRCSDDFYLVASTDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTI-EGTGDCGGWVGSICDKPDIGCKDTTGNYDIMMPSIAKSGMYKIRVGLFGDDSVYACSEAFEVL 915
AL V P+ G++V+A +Y VEWTG+S D+RF+IDL YCGS FC +D CG + +LC G +GC D G YD++MPEP+ GTSS GYKV + + S+ CS DF LVASTD P G G S+ V SP+ A++G YTVE+DY+NG G++ RF IDLY+ GTGDCG +V ++CDKP IGC D+ G+YD+ +PS +GMY +RVG+F DD ++ CSE FE++
Sbjct: 19 ALEVVSPAAGISVIADRTYTVEWTGTS-DSRFEIDLYYCGS--FCMEDECGDWVTALCPYGADGCP-DTQGDYDIVMPEPMAGTSS-GYKVVVTDSNDE-SSMGCSGDFTLVASTDAPAAGEVGY-SLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIV 244
BLAST of mRNA_H-paniculata_contig7388.15359.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE) HSP 1 Score: 229 bits (584), Expect = 5.550e-68 Identity = 126/249 (50.60%), Postives = 167/249 (67.07%), Query Frame = 1
Query: 169 TTLAAVA-SMLATATITQALRVTMPSEGMTVVAGSSYPVEWTGSSPDARFDIDLTYCGSYSFCFDDNCGFLLESLCMEGVEGCALDASGAYDVIMPEPLGGTSSNGYKVRIAEVGGSFDSVRCSDDFYLVASTDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTIEGTGDCGGWVGSICDKPDIGCKDTTGNYDIMMPSIAKSGMYKIRVGLFGDDSVYACSEAFEV 912
T AAVA ML+ A AL V P G++V+A +Y VEWTG++ RF+IDL YC S FC DD CG + +LC G +GC D++G YD+IMPEP+ GTSS GYKV + D + CSDDF L+AS D P G G S+ V SP+ A++GE YTVE+DY+NGFG++ RF +DLY + GTGDCG +V ++CD+P IGC D+ G+YD+ +PS +GMY IRVG+F D+ +Y CS+ FEV
Sbjct: 4 TAFAAVAFGMLSAA---NALEVVSPDGGISVLADRAYTVEWTGTTT-GRFEIDLYYCNS--FCMDDVCGDWVTALCPYGADGCP-DSAGDYDIIMPEPMSGTSS-GYKVMVKNAEDESD-MGCSDDFTLIASEDAPEAGEMGY-SLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEV 242 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7388.15359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig7388.15359.1 >prot_H-paniculata_contig7388.15359.1 ID=prot_H-paniculata_contig7388.15359.1|Name=mRNA_H-paniculata_contig7388.15359.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=265bp MNFSSMTTLAAVASMLATATITQALRVTMPSEGMTVVAGSSYPVEWTGSSback to top mRNA from alignment at H-paniculata_contig7388:759..3748- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig7388.15359.1 ID=mRNA_H-paniculata_contig7388.15359.1|Name=mRNA_H-paniculata_contig7388.15359.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2990bp|location=Sequence derived from alignment at H-paniculata_contig7388:759..3748- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig7388:759..3748- >mRNA_H-paniculata_contig7388.15359.1 ID=mRNA_H-paniculata_contig7388.15359.1|Name=mRNA_H-paniculata_contig7388.15359.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1590bp|location=Sequence derived from alignment at H-paniculata_contig7388:759..3748- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |