mRNA_H-paniculata_contig7388.15359.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7388.15359.1
Unique NamemRNA_H-paniculata_contig7388.15359.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig7388.15359.1 vs. uniprot
Match: D8LEQ9_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEQ9_ECTSI)

HSP 1 Score: 293 bits (749), Expect = 4.270e-92
Identity = 148/264 (56.06%), Postives = 193/264 (73.11%), Query Frame = 1
Query:  160 SSMTTLAAVASMLATATIT--QALRVTMPSEGMTVVAGSSYPVEWTGSSPDARFDIDLTYCGSYSFCFDD-NCGFLLESLCMEGV-EGCALDASGAYDVIMPEPLGGTSSNGYKVRIAEVGGSFDSVRCSDDFYLVASTDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTI---EGTGDCGGWVGSICDKPDIGCKDTTGNYDIMMPSIAKSGMYKIRVGLFGDDSVYACSEAFEVLPTVGD 930
            SS+ +L A+A +L   TIT  +AL+V  P+   TVV+G  Y V W G+S D RF+IDL YCGSYS+CF++  CGF L ++C EG   GC   A  +  V  PEPLGG S+ GY++RIAEVG   D+ RCSDDFYL++S D P VG  G P+I VV+PTA+++AI+GE YTVEFDYDNGFG  +GRFKIDLY     +G GDCG WV S+CDKPD+GC D+ G+Y++++P+ ++ GMYKIRVGLFGDD++YACS +FEV+    D
Sbjct:    3 SSVASLVALAGILGHTTITSTEALQVLTPAVAETVVSGRPYIVSWNGASADDRFEIDLHYCGSYSYCFEEAECGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRIAEVGS--DTYRCSDDFYLMSSADAPAVGEDGGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKALGEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPTDSEDGMYKIRVGLFGDDTIYACSPSFEVVAAAAD 264          
BLAST of mRNA_H-paniculata_contig7388.15359.1 vs. uniprot
Match: A0A6H5KPZ5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ5_9PHAE)

HSP 1 Score: 286 bits (731), Expect = 1.420e-89
Identity = 140/257 (54.47%), Postives = 186/257 (72.37%), Query Frame = 1
Query:  160 SSMTTLAAVASMLA-TATITQALRVTMPSEGMTVVAGSSYPVEWTGSSPDARFDIDLTYCGSYSFCFDD--NCGFLLESLCMEGVEGCALDASGAYDVIMPEPLGGTSSNGYKVRIAEVGGSFDSVRCSDDFYLVASTDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTIEGTGDCGGWVGSICDKPDIGCKDTTGNYDIMMPSIAKSGMYKIRVGLFGDDSVYACSEAFEVLPT 921
            SS+  L A+A +L  T T T+ALRV  P+   +V +G  Y V W G+  D RF++DL YCGSYSFCF +  +CGF + ++C E  + C +    +  V  PEP+ G S+NGY+VRI+EVG   D+ RCS+DFYLVAS DV   G  G P++ VV+P A ++A++GE YTVEFDYDNGFG  +GRFKIDLY  EG GDCG WV S+CDKPD+GC+D+ G+YD+++P+ ++ GMYKIRVGLFGDDS+YACS +FE+  T
Sbjct:    3 SSVAFLTALAGVLGNTITSTEALRVLTPAVAESVASGRPYVVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQDDQSSQVTFPEPVAGHSNNGYRVRISEVGT--DNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYKIRVGLFGDDSIYACSPSFEITTT 257          
BLAST of mRNA_H-paniculata_contig7388.15359.1 vs. uniprot
Match: D7FN59_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN59_ECTSI)

HSP 1 Score: 275 bits (704), Expect = 8.790e-86
Identity = 141/256 (55.08%), Postives = 183/256 (71.48%), Query Frame = 1
Query:  160 SSMTTLAAVASMLATA-TITQALRVTMPSEGMTVVAGSSYPVEWTGSSPDARFDIDLTYCGSYSFCFD--DNCGFLLESLCMEGVEGCALDASGAYDVIMPEPLGGTSSNGYKVRIAEVGGSFDSVRCSDDFYLVASTDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTIEGTGDCGGWVGSICDKPDIGCKDTTGNYDIMMPSIAKSGMYKIRVGLFGDDSVYACSEAFEVLP 918
            SS+  +AA+  ML    T T+ALRV  P+   TVV+   Y V W G+SPD RF+IDL YCGSYSFCF+  D CGF + +LC EG + C         V +PEP+ G S++GY+VRI +VG   ++ RCSD+FYL++S D     G   P++ VV+P++ ++A++G  YTVEFDYDNGFG   GRFKIDLY  EGTGDCG WV S+CDKPD+GC DT G+YDI++P  ++ GMYKIRVGLFGDDSV+ACS +FEV+P
Sbjct:    3 SSVAFIAALTGMLGNIITDTEALRVLTPAVAETVVSDMPYIVSWKGASPDDRFEIDLHYCGSYSFCFEEADECGFWVTNLCAEGDDACMNQDDLMSQVTLPEPVDGHSNSGYRVRIGKVGT--ETFRCSDEFYLMSSADASDQDG---PTMEVVAPSSGALAVAGAVYTVEFDYDNGFGAQQGRFKIDLYHAEGTGDCGDWVSSVCDKPDVGCHDTEGDYDIVIPRDSEGGMYKIRVGLFGDDSVFACSASFEVVP 253          
BLAST of mRNA_H-paniculata_contig7388.15359.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI)

HSP 1 Score: 259 bits (663), Expect = 2.020e-79
Identity = 126/232 (54.31%), Postives = 165/232 (71.12%), Query Frame = 1
Query:  220 ALRVTMPSEGMTVVAGSSYPVEWTGSSPDARFDIDLTYCGSYSFCFDDNCGFLLESLCMEGVEGCALDASGAYDVIMPEPLGGTSSNGYKVRIAEVGGSFDSVRCSDDFYLVASTDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTIEGTGDCGGWVGSICDKPDIGCKDTTGNYDIMMPSIAKSGMYKIRVGLFGDDSVYACSEAFEVL 915
            AL V  P+EG  VVA  +Y VEWTG+  + R++IDL YCGS   C +D CG  + +LC  G +GC  D  G YD++MPEP+ GTS +GYKVR+A+V    DS  CSD+FYL+A  + P  G  G P + V SP++   A +GEEYTVEFDYDNG G++VGRF IDLY+  G+GDCG ++ ++CDKP IGCKD+ G+YD+ +P  A++GMY IRVG F DDSVY CS+ FE+L
Sbjct:    7 ALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGS--MCMEDECGDWVTALCPYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVADVDDD-DSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEIL 234          
BLAST of mRNA_H-paniculata_contig7388.15359.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE)

HSP 1 Score: 252 bits (643), Expect = 1.100e-76
Identity = 122/235 (51.91%), Postives = 161/235 (68.51%), Query Frame = 1
Query:  211 ITQALRVTMPSEGMTVVAGSSYPVEWTGSSPDARFDIDLTYCGSYSFCFDDNCGFLLESLCMEGVEGCALDASGAYDVIMPEPLGGTSSNGYKVRIAEVGGSFDSVRCSDDFYLVASTDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTIEGTGDCGGWVGSICDKPDIGCKDTTGNYDIMMPSIAKSGMYKIRVGLFGDDSVYACSEAFEVL 915
            +  AL V  P+ G  VV+  +Y VEW+G+  + RF+IDL YC S   C +D CG  + +LC  G +GC  D  G YD++MPEP+ GTS +GYKVR+A+V    DS  CSD+FYL+A  D P     G P + V SP+    A +GEEYTVEFDYDNG G++VGRF IDLY   G+GDCG ++ ++CDKP IGCKD+ G+YD+ +P  A++GMY IRVG F D+SVY CS+ FE+L
Sbjct:   17 VASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNS--MCMEDECGEWVTALCPYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVADVDDE-DSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEIL 247          
BLAST of mRNA_H-paniculata_contig7388.15359.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE)

HSP 1 Score: 249 bits (637), Expect = 1.150e-75
Identity = 125/238 (52.52%), Postives = 167/238 (70.17%), Query Frame = 1
Query:  220 ALRVTMPSEGMTVVAGSSYPVEWTGSSPDARFDIDLTYCGSYSFCFDDNCGFLLESLCMEGVEGCALDASGAYDVIMPEPLGGTSSNGYKVRIAEVGGSFDSVRCSDDFYLVASTDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTIEGTGDCGGWVGSICDKPDIGCKDTTGNYDIMMPSIAKSGMYKIRVGLFGDDSVYACSEAFEVLPTVGDD 933
            AL+V+ PS+G+TV+A  +Y VEWTG+S D RF+IDL YCGS   C +D+CG  + +LC  G +GC  D  G YD++MPEP+ GTS +GYKVR+ ++    D+  CSD+FYL+AS++ P VG    P++ V SP +  +A +  EYTVEFDYDNG G++V RF IDLY  +G GDCG +V SICDKP IGCKD+ G+YD+ +P    +G YKIRV  F DDS+Y+CS  F +    GDD
Sbjct:   19 ALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGS--MCMEDDCGDWVTALCPYGEDGCP-DNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDA-DCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTI--EEGDD 250          
BLAST of mRNA_H-paniculata_contig7388.15359.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI)

HSP 1 Score: 237 bits (604), Expect = 6.430e-71
Identity = 123/238 (51.68%), Postives = 157/238 (65.97%), Query Frame = 1
Query:  220 ALRVTMPSEGMTVVAGSSYPVEWTGSSPDARFDIDLTYCGSYSFCFDDNCGFLLESLCMEGVEGCALDASGAYDVIMPEPLGGTSSNGYKVRIAEVGGSFDSVRCSDDFYLVASTDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTIEGTGDCGGWVGSICDKPDIGCKDTTGNYDIMMPSIAKSGMYKIRVGLFGDDSVYACSEAFEVLPTVGDD 933
            AL V  PS  + VVA  +Y VEWTG+    RF+IDL +CGS   C +D+CG  + +LC  G EGC  D  G YD++MPEP+ G S++GYKVR+ +V    DS+ CSD FYL+AS D P  G      + V SP     A +GEEYTVEFDYDNG G+ V RF IDLY  +G GDCG +V SICDKP IGCKD+ G+YD+ +P+  ++G YKIRVG F D+ +Y CS  F ++   GDD
Sbjct:   19 ALEVVTPSADLIVVADRTYTVEWTGAD-SGRFEIDLYHCGS--MCMEDSCGDWVTALCPYGEEGCP-DNEGDYDIVMPEPMSGESNSGYKVRVMDVSDE-DSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMG--GDD 249          
BLAST of mRNA_H-paniculata_contig7388.15359.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI)

HSP 1 Score: 236 bits (603), Expect = 7.960e-71
Identity = 124/232 (53.45%), Postives = 161/232 (69.40%), Query Frame = 1
Query:  220 ALRVTMPSEGMTVVAGSSYPVEWTGSSPDARFDIDLTYCGSYSFCFDDNCGFLLESLCMEGVEGCALDASGAYDVIMPEPLGGTSSNGYKVRIAEVGGSFDSVRCSDDFYLVASTDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTIEGTGDCGGWVGSICDKPDIGCKDTTGNYDIMMPSIAKSGMYKIRVGLFGDDSVYACSEAFEVL 915
            AL V  P+ G  VVA S+Y VEWTG++   R+DIDL YCGS   C +D CG  + +LC  G +GC  D  G YDV+MPEP+ GTSS GYKV + +     D   CS DF L+AST+ P     GA  ++V SP+    A++G EYTVEFDYDNG G++V RF IDLY+  G+GDCG +V +ICDKP IGCKD+ G+YD+++PS  +SGMY IRVG+F DD VY CS++FE++
Sbjct:   19 ALEVVSPAAGDMVVADSAYTVEWTGAT-SGRYDIDLYYCGSV--CMEDECGDWVTALCPYGDDGCP-DTQGDYDVVMPEPMDGTSS-GYKVMVTDSSDESD-YGCSGDFTLIASTEAPDATDMGA-YVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIV 243          
BLAST of mRNA_H-paniculata_contig7388.15359.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI)

HSP 1 Score: 230 bits (587), Expect = 2.000e-68
Identity = 119/233 (51.07%), Postives = 160/233 (68.67%), Query Frame = 1
Query:  220 ALRVTMPSEGMTVVAGSSYPVEWTGSSPDARFDIDLTYCGSYSFCFDDNCGFLLESLCMEGVEGCALDASGAYDVIMPEPLGGTSSNGYKVRIAEVGGSFDSVRCSDDFYLVASTDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTI-EGTGDCGGWVGSICDKPDIGCKDTTGNYDIMMPSIAKSGMYKIRVGLFGDDSVYACSEAFEVL 915
            AL V  P+ G++V+A  +Y VEWTG+S D+RF+IDL YCGS  FC +D CG  + +LC  G +GC  D  G YD++MPEP+ GTSS GYKV + +      S+ CS DF LVASTD P  G  G  S+ V SP+    A++G  YTVE+DY+NG G++  RF IDLY+   GTGDCG +V ++CDKP IGC D+ G+YD+ +PS   +GMY +RVG+F DD ++ CSE FE++
Sbjct:   19 ALEVVSPAAGISVIADRTYTVEWTGTS-DSRFEIDLYYCGS--FCMEDECGDWVTALCPYGADGCP-DTQGDYDIVMPEPMAGTSS-GYKVVVTDSNDE-SSMGCSGDFTLVASTDAPAAGEVGY-SLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIV 244          
BLAST of mRNA_H-paniculata_contig7388.15359.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 5.550e-68
Identity = 126/249 (50.60%), Postives = 167/249 (67.07%), Query Frame = 1
Query:  169 TTLAAVA-SMLATATITQALRVTMPSEGMTVVAGSSYPVEWTGSSPDARFDIDLTYCGSYSFCFDDNCGFLLESLCMEGVEGCALDASGAYDVIMPEPLGGTSSNGYKVRIAEVGGSFDSVRCSDDFYLVASTDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTIEGTGDCGGWVGSICDKPDIGCKDTTGNYDIMMPSIAKSGMYKIRVGLFGDDSVYACSEAFEV 912
            T  AAVA  ML+ A    AL V  P  G++V+A  +Y VEWTG++   RF+IDL YC S  FC DD CG  + +LC  G +GC  D++G YD+IMPEP+ GTSS GYKV +       D + CSDDF L+AS D P  G  G  S+ V SP+    A++GE YTVE+DY+NGFG++  RF +DLY + GTGDCG +V ++CD+P IGC D+ G+YD+ +PS   +GMY IRVG+F D+ +Y CS+ FEV
Sbjct:    4 TAFAAVAFGMLSAA---NALEVVSPDGGISVLADRAYTVEWTGTTT-GRFEIDLYYCNS--FCMDDVCGDWVTALCPYGADGCP-DSAGDYDIIMPEPMSGTSS-GYKVMVKNAEDESD-MGCSDDFTLIASEDAPEAGEMGY-SLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEV 242          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7388.15359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D8LEQ9_ECTSI4.270e-9256.06EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE... [more]
A0A6H5KPZ5_9PHAE1.420e-8954.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FN59_ECTSI8.790e-8655.08EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LI46_ECTSI2.020e-7954.31EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JFT9_9PHAE1.100e-7651.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRG9_9PHAE1.150e-7552.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYL2_ECTSI6.430e-7151.68EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
D7G3E8_ECTSI7.960e-7153.45Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus T... [more]
D7G3F0_ECTSI2.000e-6851.07EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JY62_9PHAE5.550e-6850.60GPI-anchored domain-containing protein n=2 Tax=Ect... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7388contigH-paniculata_contig7388:759..3748 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons5
Model size1663
Cds size795
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930903.3247206-UTR-H-paniculata_contig7388:758..14761622930903.3247206-UTR-H-paniculata_contig7388:758..1476Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7388 759..1476 -
1691481503.622306-UTR-H-paniculata_contig7388:758..14761691481503.622306-UTR-H-paniculata_contig7388:758..1476Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7388 759..1476 -
1622930903.4248886-UTR-H-paniculata_contig7388:3598..37481622930903.4248886-UTR-H-paniculata_contig7388:3598..3748Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7388 3599..3748 -
1691481503.6822267-UTR-H-paniculata_contig7388:3598..37481691481503.6822267-UTR-H-paniculata_contig7388:3598..3748Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7388 3599..3748 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930903.3412838-CDS-H-paniculata_contig7388:1476..16221622930903.3412838-CDS-H-paniculata_contig7388:1476..1622Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7388 1477..1622 -
1691481503.632093-CDS-H-paniculata_contig7388:1476..16221691481503.632093-CDS-H-paniculata_contig7388:1476..1622Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7388 1477..1622 -
1622930903.3576243-CDS-H-paniculata_contig7388:1844..19801622930903.3576243-CDS-H-paniculata_contig7388:1844..1980Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7388 1845..1980 -
1691481503.6414669-CDS-H-paniculata_contig7388:1844..19801691481503.6414669-CDS-H-paniculata_contig7388:1844..1980Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7388 1845..1980 -
1622930903.3750277-CDS-H-paniculata_contig7388:2193..24961622930903.3750277-CDS-H-paniculata_contig7388:2193..2496Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7388 2194..2496 -
1691481503.65078-CDS-H-paniculata_contig7388:2193..24961691481503.65078-CDS-H-paniculata_contig7388:2193..2496Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7388 2194..2496 -
1622930903.3888912-CDS-H-paniculata_contig7388:2759..28501622930903.3888912-CDS-H-paniculata_contig7388:2759..2850Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7388 2760..2850 -
1691481503.6606908-CDS-H-paniculata_contig7388:2759..28501691481503.6606908-CDS-H-paniculata_contig7388:2759..2850Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7388 2760..2850 -
1622930903.4050663-CDS-H-paniculata_contig7388:3479..35981622930903.4050663-CDS-H-paniculata_contig7388:3479..3598Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7388 3480..3598 -
1691481503.6713164-CDS-H-paniculata_contig7388:3479..35981691481503.6713164-CDS-H-paniculata_contig7388:3479..3598Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7388 3480..3598 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7388.15359.1prot_H-paniculata_contig7388.15359.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7388 1477..3598 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7388.15359.1

>prot_H-paniculata_contig7388.15359.1 ID=prot_H-paniculata_contig7388.15359.1|Name=mRNA_H-paniculata_contig7388.15359.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=265bp
MNFSSMTTLAAVASMLATATITQALRVTMPSEGMTVVAGSSYPVEWTGSS
PDARFDIDLTYCGSYSFCFDDNCGFLLESLCMEGVEGCALDASGAYDVIM
PEPLGGTSSNGYKVRIAEVGGSFDSVRCSDDFYLVASTDVPMVGGGGAPS
IAVVSPTAESVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTIEGTGDCGG
WVGSICDKPDIGCKDTTGNYDIMMPSIAKSGMYKIRVGLFGDDSVYACSE
AFEVLPTVGDDIWA*
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mRNA from alignment at H-paniculata_contig7388:759..3748-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7388.15359.1 ID=mRNA_H-paniculata_contig7388.15359.1|Name=mRNA_H-paniculata_contig7388.15359.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2990bp|location=Sequence derived from alignment at H-paniculata_contig7388:759..3748- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAACACCGAGCACGCACCCAATCACTCTCCTCTCCTCCACCTCTTCAGA CAGCTCTCACTGCATAAGAACAGGGCAGCACCACTCCCAAGCATTTCACT TCCGCCCCACGCAACCAAGTGCTCAACTTTCTTCTGCGAACTAACGAAAC ATGAACTTCTCCAGCATGACGACCCTCGCTGCAGTGGCGAGTATGTTGGC AACAGCGACGATTACCCAGGCGCTGCGTGTCACGATGCCGTCGGAGGGCA TGACTGTGGTAGCTGGGAGGTTAGTGAAAAAAAAATCGCATTGAGGTTCC AAGTTTGTTCGTGCCCACTTCTACGCCCGATGTCAAATAAATACAAGATA TTCCTGTCAAGTACTTGAATCAGTTGTTATTGGCATCTGAAGATACATGT CGGTTGGCACAGCATGTGTGGGGTCGCAGGGTATTTTTCATCTTTATCTG TTCCCTACCTCAAGAATAGAGGAAAACAACGCTTATCAACATGATAGCGG GTACAGTGAGCCGCCGCTGTTCAGACAGGTTCACTAAATGCAGTAACCAC AGCATACAAAGGTGGTTGTATGTACTGCAGGCAAGGTCCTGCCCATAAGG ACCAAGGGCTTGATTTGTATCGTGATCTGTGTGTCAAACGGATGCTCCCG TGTCGTTTCGTGTTCCAAAACAGCACGTTGGGGGACACGGGGCATTAAGG CGTCACTGGTGCTGTCTACTCGTCGCGGTTCCTGGTCTCCGTTCCACGAG GATGAATCCATGACCCTGGCACATGTGTTACTCATGTAAAGCGGTGCATA AGGCTGAAGTATTTCTAGCCCGCAAGTACTACCATCATGATAACCTCTTC GTCGCTTCGATTGCACGTCTCCTTGTTTCCTCTTGCTGTCTGTTGTAGCT CTTACCCTGTGGAGTGGACGGGCTCCTCGCCGGATGCGCGATTCGACATC GACCTCACCTACTGTGGTTCCTACTCGTTCTGCTTCGATGTGGGTGCCCG CCAGTAGTATGAGAGATAGGACAACACTGCGTTGAGATTTAGCTTGGTAG ACTTTCCCATAACGTCAGGTCTGCCTATTTGGTGTGCGTAAACACATTAT CCCAGCACCCAACATATCCTGTACCAAAAAGAGAAACTACTCAGTCCGAA TGGGACTTGATCAGAGAGCAAGCTCGTTTTGTTGTGTTTTGTCGATAGAT TTGACCGCCTCTCCTCCCATTGTATCCGTCGTGCCTCGCGCGCAATCCGC AGGATAACTGCGGTTTCCTCCTGGAAAGCTTGTGCATGGAAGGAGTCGAG GGTTGCGCTCTGGACGCCAGCGGCGCCTACGATGTGATCATGCCAGAGCC ATTGGGAGGAACCTCCAGCAACGGCTACAAGGTGCGGATTGCAGAGGTCG GAGGTAGCTTCGACAGTGTTCGATGCTCGGACGACTTCTACTTGGTAGCG TCCACAGACGTTCCCATGGTTGGAGGAGGAGGAGCTCCGTCAATAGCTGT GGTGTCTCCGACGGCCGAGTCGGTGGCGATTTCTGGCGAGGAGTATACTG TGGAGGTGAGATTATGGCCGTGGACGTCTTATTCGTCGGTTAAAGGTGAC TGTTTTACGATTTTCTCGAGCATAATTTCTCTAGGTATCGACATTCTGGC TCAAGTAGGAAATCGAGTACTCAAACCAGTGATCTATACCGCTGCAAGAC TTGGACGCGAGGTTTCTGTTGATACACATGGCTTAAGTACCACCGTCTCT TTCGTGCTTTGTGTTTAGTTTGACTACGACAATGGGTTCGGTAACACGGT GGGACGGTTCAAGATCGATCTGTACACCATCGAGGGCACCGGCGACTGCG GCGGCTGGGTCGGTTCTATCTGCGACAAGCCCGACATCGGCTGCAAAGAC ACGAGTGAGTCGTGTCATCTGTCTAGTTCACGTTCGAATGGTTTAGAGGG GTAACAGTTGCCATTATGACATACATGTAGGGCTATAGCCACTGTGATGT TTAATGTTATACGCGTCGGATATGTCAAGCGGGTTCTCATGCTAGTGTGC TGATGGCTATGTCCATACCTTTGTTCCCTAACGCCGTCCCTCGTGTGTGA CGACTATGTGCCACTTGTTGGATCAGCTGGAAACTACGACATCATGATGC CGTCAATCGCTAAATCCGGAATGTACAAGATCCGCGTGGGCTTGTTCGGG GACGACTCTGTGTACGCTTGCTCTGAGGCGTTCGAGGTCTTGCCTACTGT TGGCGATGACATCTGGGCATAAAATGAGTCAGACATCATGCCAGTGTGCA TATCAATTTTTTTATGTCGGCCGGCGGTGGCGGCAGAAGAGCGCTAGATG CGAGCATATACATGTGTATCTGCATTAGGGCATTATGCAGCGGCGCCAAA TCAGTACCACTTACTATTAGTTTATTCGTGCAATGTCTTACGCTAGGCAT GTCGAGCTGTGTTTTTCGTCATGATTGGTTTGTGTGTGGTGTGTATGATA TGTTGGGTGTAGCCATTCGTCATGTTGCGCTGAGAGGGCCAACAGTCGGT CGAGCACAGCTTCGTTCGTTGAGATCAACCCTTGGGTTGGTGGGTATTGG TGTTTCCCTTGGCTACTGGGCTTCGGAATCTGTTGTTTGTGTATGTGAGC AGTTGTTTTTTGTCATAAGTAGAAAGCGGGTACCCTTGGGTAGCCGAAGT GGTGTATGGTGTCGAATTTGGAGTGAAGGTGGCTGATTGTGGCGGAGATA AATACAACTGATGAGTTAAGCATGTGGGCGGGGCGGTTGCTTGCATATAC ACCAGCAGCCTGTTTCCGCAGACGGAACAGTGTCCTGATATTGCTGTTAC GCAATGGAGAGAATGGCAGAGATTTAGTTTTTGGGGGTGAGTGGCAGCTT TTTAGTGCTAAGTAGGCTTATCACGGGTCGAGATCCTTGCGATCCTTGAT GAAACAGTACCTCCACGAAATAATCGATTTTTACAAATCA
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Coding sequence (CDS) from alignment at H-paniculata_contig7388:759..3748-

>mRNA_H-paniculata_contig7388.15359.1 ID=mRNA_H-paniculata_contig7388.15359.1|Name=mRNA_H-paniculata_contig7388.15359.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1590bp|location=Sequence derived from alignment at H-paniculata_contig7388:759..3748- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACTTCTCCAGCATGACGACCCTCGCTGCAGTGGCGAGTATGTTGGC
AACAGCGACGATTACCCAGGCGCTGCGTGTCACGATGCCGTCGGAGGGCA
TGACTGTGGTAGCTGGGAGATGAACTTCTCCAGCATGACGACCCTCGCTG
CAGTGGCGAGTATGTTGGCAACAGCGACGATTACCCAGGCGCTGCGTGTC
ACGATGCCGTCGGAGGGCATGACTGTGGTAGCTGGGAGCTCTTACCCTGT
GGAGTGGACGGGCTCCTCGCCGGATGCGCGATTCGACATCGACCTCACCT
ACTGTGGTTCCTACTCGTTCTGCTTCGATCTCTTACCCTGTGGAGTGGAC
GGGCTCCTCGCCGGATGCGCGATTCGACATCGACCTCACCTACTGTGGTT
CCTACTCGTTCTGCTTCGATGATAACTGCGGTTTCCTCCTGGAAAGCTTG
TGCATGGAAGGAGTCGAGGGTTGCGCTCTGGACGCCAGCGGCGCCTACGA
TGTGATCATGCCAGAGCCATTGGGAGGAACCTCCAGCAACGGCTACAAGG
TGCGGATTGCAGAGGTCGGAGGTAGCTTCGACAGTGTTCGATGCTCGGAC
GACTTCTACTTGGTAGCGTCCACAGACGTTCCCATGGTTGGAGGAGGAGG
AGCTCCGTCAATAGCTGTGGTGTCTCCGACGGCCGAGTCGGTGGCGATTT
CTGGCGAGGAGTATACTGTGGAGGATAACTGCGGTTTCCTCCTGGAAAGC
TTGTGCATGGAAGGAGTCGAGGGTTGCGCTCTGGACGCCAGCGGCGCCTA
CGATGTGATCATGCCAGAGCCATTGGGAGGAACCTCCAGCAACGGCTACA
AGGTGCGGATTGCAGAGGTCGGAGGTAGCTTCGACAGTGTTCGATGCTCG
GACGACTTCTACTTGGTAGCGTCCACAGACGTTCCCATGGTTGGAGGAGG
AGGAGCTCCGTCAATAGCTGTGGTGTCTCCGACGGCCGAGTCGGTGGCGA
TTTCTGGCGAGGAGTATACTGTGGAGTTTGACTACGACAATGGGTTCGGT
AACACGGTGGGACGGTTCAAGATCGATCTGTACACCATCGAGGGCACCGG
CGACTGCGGCGGCTGGGTCGGTTCTATCTGCGACAAGCCCGACATCGGCT
GCAAAGACACGATTTGACTACGACAATGGGTTCGGTAACACGGTGGGACG
GTTCAAGATCGATCTGTACACCATCGAGGGCACCGGCGACTGCGGCGGCT
GGGTCGGTTCTATCTGCGACAAGCCCGACATCGGCTGCAAAGACACGACT
GGAAACTACGACATCATGATGCCGTCAATCGCTAAATCCGGAATGTACAA
GATCCGCGTGGGCTTGTTCGGGGACGACTCTGTGTACGCTTGCTCTGAGG
CGTTCGAGGTCTTGCCTACTGTTGGCGATGACATCTGGGCATAACTGGAA
ACTACGACATCATGATGCCGTCAATCGCTAAATCCGGAATGTACAAGATC
CGCGTGGGCTTGTTCGGGGACGACTCTGTGTACGCTTGCTCTGAGGCGTT
CGAGGTCTTGCCTACTGTTGGCGATGACATCTGGGCATAA
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