mRNA_H-paniculata_contig7383.15355.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7383.15355.1
Unique NamemRNA_H-paniculata_contig7383.15355.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7383.15355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7383contigH-paniculata_contig7383:6472..10364 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-13_001630.2
Exons3
Model size297
Cds size279
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7383.15355.1prot_H-paniculata_contig7383.15355.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7383 6472..10346 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930902.8589888-CDS-H-paniculata_contig7383:6471..65701622930902.8589888-CDS-H-paniculata_contig7383:6471..6570Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7383 6472..6570 -
1691481503.4988108-CDS-H-paniculata_contig7383:6471..65701691481503.4988108-CDS-H-paniculata_contig7383:6471..6570Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7383 6472..6570 -
1622930902.9073112-CDS-H-paniculata_contig7383:6981..71281622930902.9073112-CDS-H-paniculata_contig7383:6981..7128Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7383 6982..7128 -
1691481503.5097647-CDS-H-paniculata_contig7383:6981..71281691481503.5097647-CDS-H-paniculata_contig7383:6981..7128Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7383 6982..7128 -
1622930902.930632-CDS-H-paniculata_contig7383:10313..103461622930902.930632-CDS-H-paniculata_contig7383:10313..10346Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7383 10314..10346 -
1691481503.5194993-CDS-H-paniculata_contig7383:10313..103461691481503.5194993-CDS-H-paniculata_contig7383:10313..10346Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7383 10314..10346 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930902.9528983-UTR-H-paniculata_contig7383:10346..103641622930902.9528983-UTR-H-paniculata_contig7383:10346..10364Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7383 10347..10364 -
1691481503.5288699-UTR-H-paniculata_contig7383:10346..103641691481503.5288699-UTR-H-paniculata_contig7383:10346..10364Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7383 10347..10364 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7383.15355.1

>prot_H-paniculata_contig7383.15355.1 ID=prot_H-paniculata_contig7383.15355.1|Name=mRNA_H-paniculata_contig7383.15355.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
MDEAASNGHLQICRWLRRNRIEGCSWNAFDGAAKGGHTHVLEWLAQNFGE
IGPSGMAIINASKAGHLHVVQWLLQRYSQAADSGSHWALQELS
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mRNA from alignment at H-paniculata_contig7383:6472..10364-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7383.15355.1 ID=mRNA_H-paniculata_contig7383.15355.1|Name=mRNA_H-paniculata_contig7383.15355.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3893bp|location=Sequence derived from alignment at H-paniculata_contig7383:6472..10364- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATTTTCGTATCGTGTGATGGACGAGGCTGCTTCCAATGGACATCTCCA
GGTGCTTGAGATGACTAGCTAGGTGCTTAGCACGGACCATTTGTTCTCCC
ATTTGCCCCACTTGTCTTCCCCCCCCACCATTAATTGTCCATGATTTAAT
TTTGTTAGTGGGCGTATGCAGCTGCAGATGATTTTTAAAACATCATGTTA
CCCATGTTGAGGTCATATATTATTTGACGTTGAAAGTCATAGTTCAATTG
ACTGGCAAGTGGGCTGATTTACGAACGAAAATTTCAGTTAATGAAATGGA
GGATTGTTGTAATATATATATATATATATATATATTCTCCCTCCATTCCA
AAAGTCTGCGACGTTAAGAGTGTAATTTATTACAATGATCTCCGGATCAA
AACGGTTTTTTGCGTCGGATTCCTTGGTGTTTTTCACGTTAATTTTATTT
TTCGCAGTTTTACTCATTCCCGTCAATCCACCATTCTACCTACCGCCACG
TCGACAGCCCCTCGGTCGATTTTGACCGATTTTGGTAGACTTCCGGCACG
CTTCCTTTTCTTGATTTCGGTGTGCTGTACCTCGAAATCGTTACCTCCTA
GCGCCTACAAGACCTGATTGTACCGCTTGAAGAGGCTCTCTAAGGTTGTC
GCGTCGTACGCATCGTACATGCTCTTTACTCCCTCCCTCCACAAGGCCGT
CTATCGTCGTACCGTAACGCTCCCTCCAAACCCTACTTTTCAGAGATGCA
AAGAACCCCAAATTGTTGATGTTGAGATCTGGTAACTGCGCAGACTGAGG
TACGAGATTGACATTCCACCCCCCATCTCTCCCGAGTTCGTTGAGCTTCC
GCGGCGTGTCTTTCCCCGTGTGGGCGGTCACTCCGTTCTGCTGCGCGACC
ACTTCCTCACCCTCCAGCCACGGCATATTTTCCTTCAATGCTGGGAGAAA
AGAGTCCTTGTACCACTCCTGGCACCACTCGGCGTCAAAGGCCACATCGA
AGTTGTATTGCTGCCCTCGTTCACGCCAGGTCGAATTTCTTTGCGCCTAC
TTAATGACGCAAACACGCCAGATTCCAATGTTGCCGTCGAAATCGCGGGA
AGGATCTGGACGCGAAACGGCGCAGATGAACATACATCATGTTAGGAATG
TGACTGTTTTGCTGTACTTTGGTGGACCCCACCCTCTCCTTCCCGGGGAA
CATGCGGACGCGATCCCTGTCGCGAATTAGGTAAACCACGCTGCGTCTAT
GTGATTTGTTTGGAAGCCGCTCCTGGAAGTGATGCGGTTCCTTACTGCTT
GGTCCAGGATGAAGTCGACCCGGTTATTTCGGTGTGTCAGCGACAGTGAT
GGGTTAATGCGTCGTTTCACTCTCGTGGCGCCCATCTCTTCGAGCCATCG
CAGAAGCTTTGAGCTGCCGACTACGAGACGAACTTCGACTAGCTTGGCAG
ATACTTGGTCGAGGGTCAGGGTTCGATTTGCGGCGTTAACCCTTGGAATC
GTGGCGTGCTTTGTCGGTGTGCAGTCCGACGTCCGCCCGCTTCGAGACGC
TGACCTCAGCGAAAGCGTGTTACCATGGTCCAGTTGTTCTCGTACACGGG
TTCAAAGTTGTCTGGGATATTGGTCGCCAACTCCAAATTGCTCCGCCAGC
TCTGGCCCAACGCCTTTCGTAAGCCGTTTCTTACCGGGAGGTAGCGCTAA
AGCGTACCGTACGACCAACGCGTTTCGACCTTCCTCGCTCAACTCGCAAT
TTTTAACCTGGGCTGATGGGCTCTCGGCAAAAATTGCCACACTCGTCGAA
GTGGTAATGCTGGTTGCGAAACTCGCGCCGCAGATCGTCTGGAGGCTGCA
GGAGAGTCGTACACCTCTGGGCGAGGTGGTGAGACGTTGTGTGACGATAG
GGGGGGCGCTTTGTCCACCGCCGGGCCCCGCGCAGCCACTCAAACTGGAG
CCGAAAGGGTCGTTTTTTTAGTTCCCCTTTTCGCGATTTTTTCGGAACTA
TTTCGGAACAATATGCAAGAACGACATAGTTTTCCTTGAAGTTTACATCC
GTAGGTTCAATTCAAGCCATACATGACCGAAAACCTCTCTGTATTCGTAG
AAAAATGGCCTACGCAAGAAATGAAAAATCATAAAGTCCCAGACTTATGC
GACGGAGGGAGTATATATAATCAAGGTACCGTCATCGGTCGTTGATATAT
AAACAAATTCATATTTGAACTATCCCCGATCGTGATGTAAGGGTGTTGAT
TGAGCGTAAACCAAGTAAAGATTGAAGTCATTGTCATAACCTCATTATGG
GTACAGTGGAATTATCGTGTGAGCGTCAGAGCAATGCTTCATCTACGGCA
GGGTTGACTTACCAATGAAACAAACGTTTTACGGTGCAAACTCTTTCATG
TTATACCTACAATACACAGGCGAGTTATACAGTTATAGTACCTTATTAAG
GTTGCCGTAGCCCATGTTGTGTGTGGTCGAAAAGGTGCCCCTCCTCGCCC
CACATATACTACTTTCCTCTAACCCTCTCCAAAAAAATTGTAAAACATTA
TTCAGCCACATTTGGCAACGACATAATAAAGAGCGATGGCCATCGGAAAT
TGCTCTAATTCGAATAAAGCTCCACATCCTCTGGAAGGAGCGCTCTGCAG
GACGTGCGGCGGTCAACAGTCTAACTAACGACTGTGTCATGCAAAACGCA
AGTACACCCCCACGCCCGTTCCCTCCAAGAACTTCGATTTACATCTGCGT
ACCGGCTAAGAAAATCGACAGCCCGTCTATGGATTTGCTCGCTAATGAAG
GCGGTTGATGAACCACCGGTGAAGTCTTTCTTTAGCTATTCAGCCTATTT
AGCCGCATATGTACTGCCACCCCACGGCAACAAATACGATGAAATGCTTG
ATCGGTCAATCAAATTGATCCATGTGATCAGTTGACAGTGCGTAGTTTCT
TTTAAAAGCTTGATTTGATACGACTGCTTCTAAGGGCGTCAACTCTCGAC
TCTTCGTCCTCAATAGAGGAACAATTTTCTTTTGGTTTGCTCAAGTCATA
TTTCTCTTTTTCGATTATTCGCTGCCACTTGGTGTTGAGTCCTCAAACGC
AAGGAGAAGTACCTTCTTTTCCGTGTATCCAGCACGCGTAGTATGTGTCT
TGATTCGTTTTTTGGAAATACATAAATAGAGTAGTTGTTGCTCGTGCATA
TACTATATATGCTATGTTTTCTTTTTTCTCGTTCAGATATGTCGCTGGCT
GCGCCGCAACCGAATCGAGGGATGCAGCTGGAATGCCTTCGATGGCGCCG
CTAAGGGAGGCCACACGCATGTTCTGGAGTGGCTCGCTCAGAACTTCGGA
GAGATAGGGCCTAGCGGCATGGCTATCATAAATGTGGGTCTGCTGTGGTT
ATCTGCACCTTTCATCGCTTTTGCGATATATCTATATATTGATTTTAAAC
CATTATACGTAATAATAACTAAAATTGGGCCTGCGGATTATCTCACACAC
GTAGGTTGTTGTGTCCTGTTACTGACTATGCTGTACAGTACCCTCAGAAC
GGTGCTGCTGGGTGGTAGGTGTTGTCCTTGGCAATGGTCTGATCTCTTGT
ATTAGCTGGCTATAGCTGTACTCTCAGGGTCATCCCTGGGTTGATGCAAG
TCTGACACAATCAACTTTTTACTGTCTGTAACATCAACATTAACCCAACA
GTTGTCCCCTTTGTCCTCCGCCGTCCTCCCCCGTTCCCGCCGCCACCGCC
GTCGTTATGGACAATGGGGAATGACACATGGCAATGAACAAAAGGCTTCG
AAAGCGGGGCACCTTCATGTTGTACAGTGGCTTCTACAGAGATACTCACA
AGCTGCGGATTCTGGGTCACACTGGGCACTCCAGGAACTTTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig7383:6472..10364-

>mRNA_H-paniculata_contig7383.15355.1 ID=mRNA_H-paniculata_contig7383.15355.1|Name=mRNA_H-paniculata_contig7383.15355.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig7383:6472..10364- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGAGGCTGCTTCCAATGGACATCTCCAGATGGACGAGGCTGCTTC
CAATGGACATCTCCAGATATGTCGCTGGCTGCGCCGCAACCGAATCGAGG
GATGCAGCTGGAATGCCTTCGATGGCGCCGCTAAGGGAGGCCACACGCAT
GTTCTGGAGTGGCTCGCTCAGAACTTCGGAGAGATAGGGCCTAGCGGCAT
GGCTATCATAAATATATGTCGCTGGCTGCGCCGCAACCGAATCGAGGGAT
GCAGCTGGAATGCCTTCGATGGCGCCGCTAAGGGAGGCCACACGCATGTT
CTGGAGTGGCTCGCTCAGAACTTCGGAGAGATAGGGCCTAGCGGCATGGC
TATCATAAATGCTTCGAAAGCGGGGCACCTTCATGTTGTACAGTGGCTTC
TACAGAGATACTCACAAGCTGCGGATTCTGGGTCACACTGGGCACTCCAG
GAACTTTCCGCTTCGAAAGCGGGGCACCTTCATGTTGTACAGTGGCTTCT
ACAGAGATACTCACAAGCTGCGGATTCTGGGTCACACTGGGCACTCCAGG
AACTTTCC
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