mRNA_H-paniculata_contig7377.15347.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7377.15347.1
Unique NamemRNA_H-paniculata_contig7377.15347.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7377.15347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7377contigH-paniculata_contig7377:3950..4801 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size322
Cds size168
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7377.15347.1prot_H-paniculata_contig7377.15347.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7377 4103..4801 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930901.4823582-UTR-H-paniculata_contig7377:3949..41021622930901.4823582-UTR-H-paniculata_contig7377:3949..4102Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7377 3950..4102 +
1691481502.827415-UTR-H-paniculata_contig7377:3949..41021691481502.827415-UTR-H-paniculata_contig7377:3949..4102Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7377 3950..4102 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930901.5010066-CDS-H-paniculata_contig7377:4102..41831622930901.5010066-CDS-H-paniculata_contig7377:4102..4183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7377 4103..4183 +
1691481502.8373156-CDS-H-paniculata_contig7377:4102..41831691481502.8373156-CDS-H-paniculata_contig7377:4102..4183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7377 4103..4183 +
1622930901.5255578-CDS-H-paniculata_contig7377:4714..48011622930901.5255578-CDS-H-paniculata_contig7377:4714..4801Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7377 4715..4801 +
1691481502.8477657-CDS-H-paniculata_contig7377:4714..48011691481502.8477657-CDS-H-paniculata_contig7377:4714..4801Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7377 4715..4801 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7377.15347.1

>prot_H-paniculata_contig7377.15347.1 ID=prot_H-paniculata_contig7377.15347.1|Name=mRNA_H-paniculata_contig7377.15347.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=56bp
MANAKEAAIETRQTARVMSIGPMMVFEVRTSCEDQKAEGRGMANVEGGKL
LTESYS
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mRNA from alignment at H-paniculata_contig7377:3950..4801+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7377.15347.1 ID=mRNA_H-paniculata_contig7377.15347.1|Name=mRNA_H-paniculata_contig7377.15347.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=852bp|location=Sequence derived from alignment at H-paniculata_contig7377:3950..4801+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGTCGCGCAATCGACGAACCAACTATTACGGAGGAACACAGTTATTGTG
AGAAAAATTCTTTGTTTTTCAACAGAGCAAAGCTGGCCCCCGAAGCACGC
CGAAGCGTAGAGGGAACGCCAAAGGAAAGCTTGACACTGCCAATTTGGTG
AAGATGGCAAACGCGAAGGAGGCCGCAATCGAAACGAGGCAGACCGCCAG
GGTGATGAGCATTGGACCAATGATGGTGTTCGAGGTACATGCTATCTGTA
GTGGGTACAGTACAGCAGAATAGTGAGTAGTGTACAGACATCGTTTCGGA
CCAGTTTTCACACACGGTGTCCAATTTGTTTTTTATCGTACAGTGCGCCT
TCTACTGTCTGCTCAGATAATATATGCGGTACAGGTATAAATGTACTGTA
TACTGTCTGTGTGAACAGAGTACTGTACATGCAGTACATACTGTATGTTG
AATCCGTTGTGATATGCAACACAGTCTGTACGTTGTTTTGCTGCTGCACG
ACACCGTTTCAGAACAATTTTTCAAACACGGTATCCAAGTGTTTTTTACT
GTACAGTGCGGTTTGTACTGTGTGTTGTGTCGACTTCACTGTAAAAATAC
TGACCCGATTGCCCCTCAGCGAAGTAACGTGCTCGATGTTTGTGCTCCCT
ATACTCTGAAGTTACCGATGCTCTGTATAGATTGAGAATGTTACGCAGTG
CCAATTGTGTTTTGGGAGAAATTGTAACGTTTGCACTTTCCGCCTGCGCG
GGGTGGGGTGAACAGGTTCGCACTTCATGCGAGGATCAGAAGGCGGAGGG
GCGAGGCATGGCAAATGTCGAAGGCGGAAAGCTATTGACGGAAAGCTATT
CT
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Coding sequence (CDS) from alignment at H-paniculata_contig7377:3950..4801+

>mRNA_H-paniculata_contig7377.15347.1 ID=mRNA_H-paniculata_contig7377.15347.1|Name=mRNA_H-paniculata_contig7377.15347.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at H-paniculata_contig7377:3950..4801+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAAACGCGAAGGAGGCCGCAATCGAAACGAGGCAGACCGCCAGGGT
GATGAGCATTGGACCAATGATGGTGTTCGAGATGGCAAACGCGAAGGAGG
CCGCAATCGAAACGAGGCAGACCGCCAGGGTGATGAGCATTGGACCAATG
ATGGTGTTCGAGGTTCGCACTTCATGCGAGGATCAGAAGGCGGAGGGGCG
AGGCATGGCAAATGTCGAAGGCGGAAAGCTATTGACGGAAAGCTATTCTG
TTCGCACTTCATGCGAGGATCAGAAGGCGGAGGGGCGAGGCATGGCAAAT
GTCGAAGGCGGAAAGCTATTGACGGAAAGCTATTCT
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