mRNA_H-paniculata_contig7374.15344.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7374.15344.1
Unique NamemRNA_H-paniculata_contig7374.15344.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7374.15344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7374contigH-paniculata_contig7374:2785..5922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size3004
Cds size1692
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7374.15344.1prot_H-paniculata_contig7374.15344.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7374 2965..4790 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930900.9240808-UTR-H-paniculata_contig7374:2784..29641622930900.9240808-UTR-H-paniculata_contig7374:2784..2964Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7374 2785..2964 -
1691481502.575313-UTR-H-paniculata_contig7374:2784..29641691481502.575313-UTR-H-paniculata_contig7374:2784..2964Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7374 2785..2964 -
1622930900.9784126-UTR-H-paniculata_contig7374:4790..59221622930900.9784126-UTR-H-paniculata_contig7374:4790..5922Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7374 4791..5922 -
1691481502.6152427-UTR-H-paniculata_contig7374:4790..59221691481502.6152427-UTR-H-paniculata_contig7374:4790..5922Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7374 4791..5922 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930900.9392624-CDS-H-paniculata_contig7374:2964..46231622930900.9392624-CDS-H-paniculata_contig7374:2964..4623Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7374 2965..4623 -
1691481502.5897293-CDS-H-paniculata_contig7374:2964..46231691481502.5897293-CDS-H-paniculata_contig7374:2964..4623Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7374 2965..4623 -
1622930900.9591215-CDS-H-paniculata_contig7374:4757..47901622930900.9591215-CDS-H-paniculata_contig7374:4757..4790Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7374 4758..4790 -
1691481502.6021214-CDS-H-paniculata_contig7374:4757..47901691481502.6021214-CDS-H-paniculata_contig7374:4757..4790Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7374 4758..4790 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7374.15344.1

>prot_H-paniculata_contig7374.15344.1 ID=prot_H-paniculata_contig7374.15344.1|Name=mRNA_H-paniculata_contig7374.15344.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=564bp
MSMDLTCATVQDARELVLFFSAARGFKRAALSPRSPARDTTRSRLAPAGR
AEDEPPRHDRKSPLIPSGGGDPARGAPRDELRRKALPQENATATTSALAL
IEKNIFVSPNPKNVEDLAAMEHEPSSASSSPPVSYKAPRTTFNLTVEDLQ
LLLDGSEEDSPIQNRRESEPYYRTRGGPLALDERTTPSYYPSPPSPSSVQ
TTTPPTPTPASMARNSLGRLDGGRNPKVDPVGEDLGEPSTPETKSGEVQR
TGDNIRHSDDAANDVSSCSQNLNRERCVESSRTTRHEQQPRSVPASRKKV
EKTGSVPKAGKKAGQPTLREEQRRTRKEHDLPTKKAPGLPALEKQVAVLA
STRKAPKNSSSGILRAQPQREETASESTLGFMAPTRKAPKNSGSGILRAQ
PQREETASESTLGVIAGSVPHALATTTQSMPRHLKSSEKGVVPRSSTDVS
PPGRDRRSSSPRQVRFVPDKEELAKVETGEIVGTQAFPPTPPARGTTADF
PERGLPQSSRLDLEGDGSHLDRSTALNHGSPRVQDEKKGTHDEQISRNNL
PRSSGAVRRGLAV*
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mRNA from alignment at H-paniculata_contig7374:2785..5922-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7374.15344.1 ID=mRNA_H-paniculata_contig7374.15344.1|Name=mRNA_H-paniculata_contig7374.15344.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3138bp|location=Sequence derived from alignment at H-paniculata_contig7374:2785..5922- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTTGGAATGTGGTCGATTTGGGGTTATGATTTATTGACGGCTAGAATTT
GACAGCAGCGACCCATACATCGCGGGATATTACTGGAGAGCCGCTCAGCG
TAGCACATGCTTTTCCTTGGGGGTCTGCCTGGCAGGTGTTAATTTTCCGT
GCCTCCGGCCGGAGCATGTGTGGGTGGGGGTTGTTATGTGTATATGATCT
TGCCTGTGAAAACTTTTATCATCTCACCGCTGATCTGAGAGACTGGACTA
AATGTGTCTGAGAGAAAGAAAGGTTGTTTCGCGTTGGTACGTGCACATCG
TTGTTGGTTTCCTATTCTGTTTCCTACGGGTTCTCTAATAGAGAATGTCT
TGCGACACTATTATAGGTTAATTCAGGAGCGTTGCTTGTGTGAAACAAAT
GTTGGAATAAAACGTCAACCGCACGCAATCACAAAACACGCGGGGTCATT
TATGCATACTCTTGAACAACCAGGGTAGCAGGTAAGGAAAATCCTGTCTG
CGGCTTGACGCTGGGAGGCGCCGGGGCCCCTGGGTTGTTTTTGGAAGGCA
TGTTTCATTTTTCAGTGGTATTGTTACCTTTTCATGCCCTTTTCAACCCA
AATACGGACTGCATCTCAAAGTAAGAAACGTTAACAAGAAGTCGACTTAC
GATCAATACAAAAATTGCCAAAAAATATAACAATACCAACGCCTCACGGC
GACTAAATTAATAGCCCGTCAACATATTTCACCACCGTTGAAACCTCCAG
GGTGGCGGTCCTACAGCATTTTCGGCTGCAAGCCGCGGAGTTTGTGTCAG
TCTCGACGGAAATACTTTCTTCCCACGGTTTTATGGCGGCGCCGCACGAA
TTAATGCGCTATTTAAATCTGCTGTGGACGGCATATTCGCTTGTTGGAAA
CCTCAACCCCGCGCACCGTGCCTCTTCGTACCCGTCCTTCATAATCTACA
TGCGCGTTGATTTATGTACGTACCGTGCTGGAAACCTGTGACCGCGATCG
TAACGTGCCCTGCTTCTCCCTGCCTTTTCACAATCACGCGCGCTGATTGA
CCCTCGCCACATTGCTGAATCGCTGTTGCGCCAGCATAACCCGGAATTCC
GAGCTTGTGCGGTTAGCCTGGTGTTCTCGGATATGTCTATGGACTTAACC
TGTGCGACAGTTCAGGTGAGCGCCCCCGTAAGCGGCTGTTGGGACGTATC
AGTCGGCTCTGGGTCGAAGAGATTTGATTGATATCTTATTGCCTGCTTGC
CTTCCTACCTGTCTGCCTATTTTCGTCCGTACTGATTCTACTCAAACAGG
ACGCTAGAGAACTGGTGCTATTTTTCTCCGCGGCCAGGGGTTTCAAGCGA
GCAGCACTTTCCCCTCGATCACCCGCCCGTGATACGACCAGATCTCGCTT
GGCTCCGGCTGGAAGGGCAGAAGACGAGCCACCGCGTCATGATCGAAAAT
CACCCTTGATTCCTTCCGGCGGTGGGGATCCTGCTCGGGGCGCACCCCGT
GACGAGCTTCGACGAAAAGCGTTGCCGCAAGAAAATGCCACCGCCACCAC
ATCGGCACTAGCTCTCATTGAAAAAAACATTTTCGTGTCGCCCAATCCCA
AAAATGTCGAAGATCTGGCGGCGATGGAGCATGAGCCCAGTTCGGCGTCT
TCTTCACCGCCCGTTTCGTACAAGGCGCCCAGAACAACGTTCAACTTGAC
GGTTGAAGATCTGCAACTGTTGCTCGACGGTTCAGAGGAGGATTCTCCAA
TTCAGAATCGAAGAGAATCTGAGCCGTATTATCGAACAAGAGGAGGCCCA
TTGGCGTTGGACGAGCGAACGACACCATCTTATTATCCGTCGCCCCCCTC
TCCTTCGAGCGTGCAAACCACGACGCCGCCAACGCCCACGCCGGCATCGA
TGGCACGGAACTCGCTGGGTAGACTGGATGGAGGAAGAAACCCCAAAGTT
GACCCCGTGGGTGAAGATCTTGGCGAGCCGTCGACGCCGGAGACAAAGAG
CGGCGAGGTTCAACGAACAGGCGACAACATCCGACATAGCGATGATGCAG
CCAACGACGTCAGCAGCTGCAGCCAAAACCTCAACCGAGAGCGGTGTGTC
GAGTCGTCGCGAACAACACGTCACGAACAACAGCCCAGGTCGGTGCCGGC
GTCACGGAAGAAAGTCGAGAAGACCGGATCGGTGCCGAAGGCGGGGAAGA
AAGCTGGGCAGCCCACACTTCGCGAGGAGCAGAGAAGAACTCGCAAGGAG
CACGATTTGCCTACCAAGAAGGCGCCGGGCCTTCCTGCCCTTGAGAAACA
GGTAGCAGTGTTGGCATCGACTCGCAAGGCTCCGAAGAATAGTAGCAGCG
GAATATTGCGTGCACAGCCGCAACGCGAAGAAACAGCGTCCGAAAGCACG
CTGGGATTCATGGCACCGACTCGCAAGGCTCCGAAGAATAGTGGCAGCGG
GATATTGCGTGCACAGCCGCAACGCGAAGAAACAGCGTCCGAAAGCACGC
TGGGAGTCATCGCGGGCTCGGTCCCTCACGCGCTAGCGACAACTACTCAA
AGTATGCCACGCCATCTCAAATCTTCTGAGAAAGGCGTCGTGCCCCGTAG
CTCTACCGATGTTTCGCCACCTGGCCGTGATCGACGATCTTCGTCGCCTC
GGCAAGTGCGATTTGTTCCAGACAAGGAAGAGCTAGCGAAGGTGGAGACG
GGCGAGATTGTGGGCACGCAAGCGTTTCCGCCGACTCCGCCAGCTCGTGG
TACTACGGCCGATTTTCCTGAACGAGGGCTACCACAAAGTTCGAGGCTCG
ATTTGGAGGGCGATGGCTCGCACTTGGATCGTTCGACAGCTCTCAACCAC
GGTTCTCCAAGAGTCCAAGACGAGAAGAAGGGCACCCACGATGAGCAGAT
TTCTCGCAATAATCTCCCCAGATCAAGCGGTGCTGTAAGGCGGGGCCTTG
CAGTTTAGGCCCGATGGGAGGAATGACGGAGCATCTTTTCACGCCTATGT
TGTCCTCTAGTAGTAAGCAAGCAGCCAATCAAGGACGCTACGAGTGCTCG
TCCAGTGTTCCCAGACGCGAGCAGTGGCGGTCAACAATGTGGCGAGTTGC
GATCCGTCATGTCAAAAAGAAGTACTTCGAGGGGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig7374:2785..5922-

>mRNA_H-paniculata_contig7374.15344.1 ID=mRNA_H-paniculata_contig7374.15344.1|Name=mRNA_H-paniculata_contig7374.15344.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3384bp|location=Sequence derived from alignment at H-paniculata_contig7374:2785..5922- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTATGGACTTAACCTGTGCGACAGTTCAGATGTCTATGGACTTAAC
CTGTGCGACAGTTCAGGACGCTAGAGAACTGGTGCTATTTTTCTCCGCGG
CCAGGGGTTTCAAGCGAGCAGCACTTTCCCCTCGATCACCCGCCCGTGAT
ACGACCAGATCTCGCTTGGCTCCGGCTGGAAGGGCAGAAGACGAGCCACC
GCGTCATGATCGAAAATCACCCTTGATTCCTTCCGGCGGTGGGGATCCTG
CTCGGGGCGCACCCCGTGACGAGCTTCGACGAAAAGCGTTGCCGCAAGAA
AATGCCACCGCCACCACATCGGCACTAGCTCTCATTGAAAAAAACATTTT
CGTGTCGCCCAATCCCAAAAATGTCGAAGATCTGGCGGCGATGGAGCATG
AGCCCAGTTCGGCGTCTTCTTCACCGCCCGTTTCGTACAAGGCGCCCAGA
ACAACGTTCAACTTGACGGTTGAAGATCTGCAACTGTTGCTCGACGGTTC
AGAGGAGGATTCTCCAATTCAGAATCGAAGAGAATCTGAGCCGTATTATC
GAACAAGAGGAGGCCCATTGGCGTTGGACGAGCGAACGACACCATCTTAT
TATCCGTCGCCCCCCTCTCCTTCGAGCGTGCAAACCACGACGCCGCCAAC
GCCCACGCCGGCATCGATGGCACGGAACTCGCTGGGTAGACTGGATGGAG
GAAGAAACCCCAAAGTTGACCCCGTGGGTGAAGATCTTGGCGAGCCGTCG
ACGCCGGAGACAAAGAGCGGCGAGGTTCAACGAACAGGCGACAACATCCG
ACATAGCGATGATGCAGCCAACGACGTCAGCAGCTGCAGCCAAAACCTCA
ACCGAGAGCGGTGTGTCGAGTCGTCGCGAACAACACGTCACGAACAACAG
CCCAGGTCGGTGCCGGCGTCACGGAAGAAAGTCGAGAAGACCGGATCGGT
GCCGAAGGCGGGGAAGAAAGCTGGGCAGCCCACACTTCGCGAGGAGCAGA
GAAGAACTCGCAAGGAGCACGATTTGCCTACCAAGAAGGCGCCGGGCCTT
CCTGCCCTTGAGAAACAGGTAGCAGTGTTGGCATCGACTCGCAAGGCTCC
GAAGAATAGTAGCAGCGGAATATTGCGTGCACAGCCGCAACGCGAAGAAA
CAGCGTCCGAAAGCACGCTGGGATTCATGGCACCGACTCGCAAGGCTCCG
AAGAATAGTGGCAGCGGGATATTGCGTGCACAGCCGCAACGCGAAGAAAC
AGCGTCCGAAAGCACGCTGGGAGTCATCGCGGGCTCGGTCCCTCACGCGC
TAGCGACAACTACTCAAAGTATGCCACGCCATCTCAAATCTTCTGAGAAA
GGCGTCGTGCCCCGTAGCTCTACCGATGTTTCGCCACCTGGCCGTGATCG
ACGATCTTCGTCGCCTCGGCAAGTGCGATTTGTTCCAGACAAGGAAGAGC
TAGCGAAGGTGGAGACGGGCGAGATTGTGGGCACGCAAGCGTTTCCGCCG
ACTCCGCCAGCTCGTGGTACTACGGCCGATTTTCCTGAACGAGGGCTACC
ACAAAGTTCGAGGCTCGATTTGGAGGGCGATGGCTCGCACTTGGATCGTT
CGACAGCTCTCAACCACGGTTCTCCAAGAGTCCAAGACGAGAAGAAGGGC
ACCCACGATGAGCAGATTTCTCGCAATAATCTCCCCAGATCAAGCGGTGC
TGTAAGGCGGGGCCTTGCAGTTTAGGACGCTAGAGAACTGGTGCTATTTT
TCTCCGCGGCCAGGGGTTTCAAGCGAGCAGCACTTTCCCCTCGATCACCC
GCCCGTGATACGACCAGATCTCGCTTGGCTCCGGCTGGAAGGGCAGAAGA
CGAGCCACCGCGTCATGATCGAAAATCACCCTTGATTCCTTCCGGCGGTG
GGGATCCTGCTCGGGGCGCACCCCGTGACGAGCTTCGACGAAAAGCGTTG
CCGCAAGAAAATGCCACCGCCACCACATCGGCACTAGCTCTCATTGAAAA
AAACATTTTCGTGTCGCCCAATCCCAAAAATGTCGAAGATCTGGCGGCGA
TGGAGCATGAGCCCAGTTCGGCGTCTTCTTCACCGCCCGTTTCGTACAAG
GCGCCCAGAACAACGTTCAACTTGACGGTTGAAGATCTGCAACTGTTGCT
CGACGGTTCAGAGGAGGATTCTCCAATTCAGAATCGAAGAGAATCTGAGC
CGTATTATCGAACAAGAGGAGGCCCATTGGCGTTGGACGAGCGAACGACA
CCATCTTATTATCCGTCGCCCCCCTCTCCTTCGAGCGTGCAAACCACGAC
GCCGCCAACGCCCACGCCGGCATCGATGGCACGGAACTCGCTGGGTAGAC
TGGATGGAGGAAGAAACCCCAAAGTTGACCCCGTGGGTGAAGATCTTGGC
GAGCCGTCGACGCCGGAGACAAAGAGCGGCGAGGTTCAACGAACAGGCGA
CAACATCCGACATAGCGATGATGCAGCCAACGACGTCAGCAGCTGCAGCC
AAAACCTCAACCGAGAGCGGTGTGTCGAGTCGTCGCGAACAACACGTCAC
GAACAACAGCCCAGGTCGGTGCCGGCGTCACGGAAGAAAGTCGAGAAGAC
CGGATCGGTGCCGAAGGCGGGGAAGAAAGCTGGGCAGCCCACACTTCGCG
AGGAGCAGAGAAGAACTCGCAAGGAGCACGATTTGCCTACCAAGAAGGCG
CCGGGCCTTCCTGCCCTTGAGAAACAGGTAGCAGTGTTGGCATCGACTCG
CAAGGCTCCGAAGAATAGTAGCAGCGGAATATTGCGTGCACAGCCGCAAC
GCGAAGAAACAGCGTCCGAAAGCACGCTGGGATTCATGGCACCGACTCGC
AAGGCTCCGAAGAATAGTGGCAGCGGGATATTGCGTGCACAGCCGCAACG
CGAAGAAACAGCGTCCGAAAGCACGCTGGGAGTCATCGCGGGCTCGGTCC
CTCACGCGCTAGCGACAACTACTCAAAGTATGCCACGCCATCTCAAATCT
TCTGAGAAAGGCGTCGTGCCCCGTAGCTCTACCGATGTTTCGCCACCTGG
CCGTGATCGACGATCTTCGTCGCCTCGGCAAGTGCGATTTGTTCCAGACA
AGGAAGAGCTAGCGAAGGTGGAGACGGGCGAGATTGTGGGCACGCAAGCG
TTTCCGCCGACTCCGCCAGCTCGTGGTACTACGGCCGATTTTCCTGAACG
AGGGCTACCACAAAGTTCGAGGCTCGATTTGGAGGGCGATGGCTCGCACT
TGGATCGTTCGACAGCTCTCAACCACGGTTCTCCAAGAGTCCAAGACGAG
AAGAAGGGCACCCACGATGAGCAGATTTCTCGCAATAATCTCCCCAGATC
AAGCGGTGCTGTAAGGCGGGGCCTTGCAGTTTAG
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