mRNA_H-paniculata_contig7372.15343.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7372.15343.1
Unique NamemRNA_H-paniculata_contig7372.15343.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig7372.15343.1 vs. uniprot
Match: W2PPF6_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PPF6_PHYPN)

HSP 1 Score: 72.0 bits (175), Expect = 9.470e-14
Identity = 38/104 (36.54%), Postives = 59/104 (56.73%), Query Frame = 1
Query:    1 NEAWFYLIRDRDRVHMFPGEKRVRTERPPHG--ERHAAEAQRTRGDGGWDVNLVTHPAQSPDLNMNDLGFFAALKSIVWRERCGTIDGLVEEVNSMYDAYDAAT 306
            +E WFY+ ++   +++  G   V TE PP    +R   EA  T    GW + L   PAQSPDLN  D+GFF +++S+  + R   ++ L+EEV+  ++A  A T
Sbjct:    2 DEKWFYIRKEGQTLYVLTGNNDVLTEEPPANVEDREVFEAVTT---DGWSIRLTNQPAQSPDLNARDVGFFDSIQSLQSQTRPRNVEDLIEEVHLGFEATKATT 102          
BLAST of mRNA_H-paniculata_contig7372.15343.1 vs. uniprot
Match: A0A081AGH7_PHYPR (Uncharacterized protein n=3 Tax=Phytophthora parasitica TaxID=4792 RepID=A0A081AGH7_PHYPR)

HSP 1 Score: 64.7 bits (156), Expect = 1.240e-10
Identity = 26/59 (44.07%), Postives = 41/59 (69.49%), Query Frame = 1
Query:  130 DGGWDVNLVTHPAQSPDLNMNDLGFFAALKSIVWRERCGTIDGLVEEVNSMYDAYDAAT 306
            DGGWD+++   PA SPD N+NDLGFFA+++S+  +++  TI+ LV  V   Y+  + +T
Sbjct:   59 DGGWDMSIKPQPANSPDFNVNDLGFFASIQSLQHKKKARTIEDLVNNVEEAYNQLEYST 117          
BLAST of mRNA_H-paniculata_contig7372.15343.1 vs. uniprot
Match: W2PEH8_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PEH8_PHYPN)

HSP 1 Score: 64.7 bits (156), Expect = 3.820e-10
Identity = 26/59 (44.07%), Postives = 41/59 (69.49%), Query Frame = 1
Query:  130 DGGWDVNLVTHPAQSPDLNMNDLGFFAALKSIVWRERCGTIDGLVEEVNSMYDAYDAAT 306
            DGGWD+++   PA SPD N+NDLGFFA+++S+  +++  TI+ LV  V   Y+  + +T
Sbjct:  160 DGGWDMSIKPQPANSPDFNVNDLGFFASIQSLQHKKKARTIEDLVNNVEEAYNQLEYST 218          
BLAST of mRNA_H-paniculata_contig7372.15343.1 vs. uniprot
Match: V9F261_PHYPR (DDE_3 domain-containing protein n=1 Tax=Phytophthora parasitica P1569 TaxID=1317065 RepID=V9F261_PHYPR)

HSP 1 Score: 64.7 bits (156), Expect = 5.530e-10
Identity = 26/59 (44.07%), Postives = 41/59 (69.49%), Query Frame = 1
Query:  130 DGGWDVNLVTHPAQSPDLNMNDLGFFAALKSIVWRERCGTIDGLVEEVNSMYDAYDAAT 306
            DGGWD+++   PA SPD N+NDLGFFA+++S+  +++  TI+ LV  V   Y+  + +T
Sbjct:   40 DGGWDMSIKPQPANSPDFNVNDLGFFASIQSLQHKKKARTIEDLVSNVEEAYNQLEYST 98          
BLAST of mRNA_H-paniculata_contig7372.15343.1 vs. uniprot
Match: W2R9B9_PHYPN (DDE_3 domain-containing protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2R9B9_PHYPN)

HSP 1 Score: 62.0 bits (149), Expect = 5.180e-9
Identity = 25/59 (42.37%), Postives = 39/59 (66.10%), Query Frame = 1
Query:  130 DGGWDVNLVTHPAQSPDLNMNDLGFFAALKSIVWRERCGTIDGLVEEVNSMYDAYDAAT 306
            DGGWD+++   PA SPD N+NDLGFF +++S+  +++  TI+ LV  V   Y   + +T
Sbjct:  300 DGGWDMSIKPPPANSPDFNVNDLGFFTSIQSLQHKKKARTIEDLVNNVEEAYSQLEYST 358          
BLAST of mRNA_H-paniculata_contig7372.15343.1 vs. uniprot
Match: J3S7K7_BETVV (Mariner transposase n=2 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=J3S7K7_BETVV)

HSP 1 Score: 61.6 bits (148), Expect = 6.910e-9
Identity = 29/71 (40.85%), Postives = 45/71 (63.38%), Query Frame = 1
Query:   85 PHGERHAAEAQRTRGDGGWDVNLVTHPAQSPDLNMNDLGFFAALKSIVWRERCGTIDGLVEEVNSMYDAYD 297
            PH + + AE      +GG+++N++  PAQSPDLN+ DLGFF A++SI  +    T+D L++ V   Y  Y+
Sbjct:  365 PHIQPNDAEFLEACREGGFEINIICQPAQSPDLNILDLGFFKAIQSIQHQSFPKTVDELIKSVEDAYTVYE 435          
BLAST of mRNA_H-paniculata_contig7372.15343.1 vs. uniprot
Match: W2IB34_PHYPR (Uncharacterized protein (Fragment) n=3 Tax=Phytophthora parasitica TaxID=4792 RepID=W2IB34_PHYPR)

HSP 1 Score: 60.1 bits (144), Expect = 1.190e-8
Identity = 36/131 (27.48%), Postives = 57/131 (43.51%), Query Frame = 1
Query:    1 NEAWFYLIRDRDRVHMFPGEKRVRTERPP-----------------------------HGERHAAEAQRTRGDGGWDVNLVTHPAQSPDLNMNDLGFFAALKSIVWRERCGTIDGLVEEVNSMYDAYDAAT 306
            +E WFY+ ++   +++  G   V TE PP                             H +    E        GW + L   PAQSPDLN  D+GFF +++S+  + R   ++ L+EEV+  ++A  A T
Sbjct:   28 DEKWFYIRKEGQTLYVLTGNNDVLTEEPPARCNPSNQVELATRPNARPHQDSTRQCRPHVDVEDREVFEAVTTDGWSIRLTNQPAQSPDLNARDVGFFDSIQSLQSQTRPRNVEDLIEEVHLGFEATKATT 158          
BLAST of mRNA_H-paniculata_contig7372.15343.1 vs. uniprot
Match: A0A485LBL9_9STRA (Aste57867_18359 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LBL9_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.380e-8
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 1
Query:  136 GWDVNLVTHPAQSPDLNMNDLGFFAALKSIVWRERCGTIDGLVEEVNSMYDAY 294
            GW   LV  P  SPD+N+ DLGFFAAL+S+  RE   +ID L+ +V++ + AY
Sbjct:   60 GWSFELVPQPPNSPDMNVLDLGFFAALQSLQHRESARSIDQLIADVDAAFAAY 112          
BLAST of mRNA_H-paniculata_contig7372.15343.1 vs. uniprot
Match: UPI00053F7B42 (uncharacterized protein LOC104898721 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F7B42)

HSP 1 Score: 59.7 bits (143), Expect = 1.790e-8
Identity = 25/54 (46.30%), Postives = 38/54 (70.37%), Query Frame = 1
Query:  136 GWDVNLVTHPAQSPDLNMNDLGFFAALKSIVWRERCGTIDGLVEEVNSMYDAYD 297
            G+D+ L+  PAQSPD+N+ DLGFF A++++  +  C ++  LV+ VN  YD YD
Sbjct:  100 GFDIRLINQPAQSPDMNVLDLGFFNAIQTLKDQLACRSVKHLVKAVNKAYDNYD 153          
BLAST of mRNA_H-paniculata_contig7372.15343.1 vs. uniprot
Match: UPI0019D591E3 (uncharacterized protein LOC120706925 isoform X1 n=4 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D591E3)

HSP 1 Score: 59.7 bits (143), Expect = 3.330e-8
Identity = 25/53 (47.17%), Postives = 34/53 (64.15%), Query Frame = 1
Query:  136 GWDVNLVTHPAQSPDLNMNDLGFFAALKSIVWRERCGTIDGLVEEVNSMYDAY 294
            GWD+ L   P  SPDLN+ DLGFFAA++++  +     IDG+V +VN  Y  Y
Sbjct:  478 GWDIRLTCQPPNSPDLNVLDLGFFAAIQALFEKGTPNNIDGIVAKVNQAYQEY 530          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7372.15343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W2PPF6_PHYPN9.470e-1436.54Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
A0A081AGH7_PHYPR1.240e-1044.07Uncharacterized protein n=3 Tax=Phytophthora paras... [more]
W2PEH8_PHYPN3.820e-1044.07Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
V9F261_PHYPR5.530e-1044.07DDE_3 domain-containing protein n=1 Tax=Phytophtho... [more]
W2R9B9_PHYPN5.180e-942.37DDE_3 domain-containing protein n=1 Tax=Phytophtho... [more]
J3S7K7_BETVV6.910e-940.85Mariner transposase n=2 Tax=Beta vulgaris subsp. v... [more]
W2IB34_PHYPR1.190e-827.48Uncharacterized protein (Fragment) n=3 Tax=Phytoph... [more]
A0A485LBL9_9STRA1.380e-849.06Aste57867_18359 protein n=1 Tax=Aphanomyces stella... [more]
UPI00053F7B421.790e-846.30uncharacterized protein LOC104898721 n=1 Tax=Beta ... [more]
UPI0019D591E33.330e-847.17uncharacterized protein LOC120706925 isoform X1 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7372contigH-paniculata_contig7372:5273..5866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue1.3e-08
Seed eggNOG ortholog4792.ETI44833
Hectar predicted targeting categoryother localisation
EggNOG OGs2EP7I@1,2SSFX@2759,3QHT7@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size309
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930900.8606694-CDS-H-paniculata_contig7372:5272..53431622930900.8606694-CDS-H-paniculata_contig7372:5272..5343Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7372 5273..5343 +
1691481502.5524848-CDS-H-paniculata_contig7372:5272..53431691481502.5524848-CDS-H-paniculata_contig7372:5272..5343Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7372 5273..5343 +
1622930900.8778632-CDS-H-paniculata_contig7372:5628..58661622930900.8778632-CDS-H-paniculata_contig7372:5628..5866Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7372 5629..5866 +
1691481502.5654082-CDS-H-paniculata_contig7372:5628..58661691481502.5654082-CDS-H-paniculata_contig7372:5628..5866Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7372 5629..5866 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7372.15343.1prot_H-paniculata_contig7372.15343.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7372 5273..5866 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7372.15343.1

>prot_H-paniculata_contig7372.15343.1 ID=prot_H-paniculata_contig7372.15343.1|Name=mRNA_H-paniculata_contig7372.15343.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
NEAWFYLIRDRDRVHMFPGEKRVRTERPPHGERHAAEAQRTRGDGGWDVN
LVTHPAQSPDLNMNDLGFFAALKSIVWRERCGTIDGLVEEVNSMYDAYDA
AT*
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mRNA from alignment at H-paniculata_contig7372:5273..5866+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7372.15343.1 ID=mRNA_H-paniculata_contig7372.15343.1|Name=mRNA_H-paniculata_contig7372.15343.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=594bp|location=Sequence derived from alignment at H-paniculata_contig7372:5273..5866+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGAAGCGTGGTTTTACCTCATTCGGGACAGGGATCGCGTCCACATGTT CCCCGGGGAGAAAAGGGTGAGGTTCACCAATCTACAGCACAAGAGTCACA TTCCTAAGGTGATGTTCGTTTGCGCCGTTTCGCGTCCAGATCCTTCTCGC GATTTCGACGGCAGGATTGGAATCTGTCGTGCTTGCTTATAAAGTAGGCG CAGAGGAAATCGGCCCGGCGTGAGCGGGGACAGCAATACGAGTTCATCGT GACCACTGACGCCGAGTGGTACCAGAAGCGGTACACTGACTCTTCACTCG CAGCGTTGAAGGAAAAGATGCCGTGGTTGGAAGATGAGGAAGTGGTCGCG CAGCAGGACGGAGCGACCCCCACACGGTGAAAGACACGCCGCGGAAGCTC AACGAACTCGGGGGGACGGAGGGTGGGACGTCAATCTCGTAACTCATCCT GCGCAGTCACCAGATCTCAACATGAACGACTTGGGGTTCTTTGCAGCTTT GAAAAGTATCGTTTGGAGGGAGCGTTGCGGTACGATAGACGGCCTTGTAG AGGAGGTAAATAGCATGTACGATGCGTACGACGCCGCGACCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig7372:5273..5866+

>mRNA_H-paniculata_contig7372.15343.1 ID=mRNA_H-paniculata_contig7372.15343.1|Name=mRNA_H-paniculata_contig7372.15343.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig7372:5273..5866+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGAAGCGTGGTTTTACCTCATTCGGGACAGGGATCGCGTCCACATGTT
CCCCGGGGAGAAAAGGGTGAGAACGAAGCGTGGTTTTACCTCATTCGGGA
CAGGGATCGCGTCCACATGTTCCCCGGGGAGAAAAGGGTGAGGACGGAGC
GACCCCCACACGGTGAAAGACACGCCGCGGAAGCTCAACGAACTCGGGGG
GACGGAGGGTGGGACGTCAATCTCGTAACTCATCCTGCGCAGTCACCAGA
TCTCAACATGAACGACTTGGGGTTCTTTGCAGCTTTGAAAAGTATCGTTT
GGAGGGAGCGTTGCGGTACGATAGACGGCCTTGTAGAGGAGGTAAATAGC
ATGTACGATGCGTACGACGCCGCGACCTGAGACGGAGCGACCCCCACACG
GTGAAAGACACGCCGCGGAAGCTCAACGAACTCGGGGGGACGGAGGGTGG
GACGTCAATCTCGTAACTCATCCTGCGCAGTCACCAGATCTCAACATGAA
CGACTTGGGGTTCTTTGCAGCTTTGAAAAGTATCGTTTGGAGGGAGCGTT
GCGGTACGATAGACGGCCTTGTAGAGGAGGTAAATAGCATGTACGATGCG
TACGACGCCGCGACCTGA
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