mRNA_H-paniculata_contig7370.15342.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7370.15342.1
Unique NamemRNA_H-paniculata_contig7370.15342.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7370.15342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7370contigH-paniculata_contig7370:10692..11203 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size512
Cds size468
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930900.806731-UTR-H-paniculata_contig7370:10691..107351622930900.806731-UTR-H-paniculata_contig7370:10691..10735Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7370 10692..10735 +
1691481502.5203426-UTR-H-paniculata_contig7370:10691..107351691481502.5203426-UTR-H-paniculata_contig7370:10691..10735Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7370 10692..10735 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930900.8189738-CDS-H-paniculata_contig7370:10735..112031622930900.8189738-CDS-H-paniculata_contig7370:10735..11203Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7370 10736..11203 +
1691481502.5319088-CDS-H-paniculata_contig7370:10735..112031691481502.5319088-CDS-H-paniculata_contig7370:10735..11203Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7370 10736..11203 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7370.15342.1prot_H-paniculata_contig7370.15342.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7370 10736..11203 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7370.15342.1

>prot_H-paniculata_contig7370.15342.1 ID=prot_H-paniculata_contig7370.15342.1|Name=mRNA_H-paniculata_contig7370.15342.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=156bp
MVHICLDSHFPNLSTTTHITSSCSAQTIASHFTPHCTALHLQIMYPLHLE
WVLTVFRNALRNTISDRRKNARGTTLQEPSRQWPFSPPQLEYPTLPWGAI
RCPHSRVQAVKARTFFCLTHDQTSPFFPLSTNCIVVSKHKNGWSGLLLLR
PSRLSC
back to top

mRNA from alignment at H-paniculata_contig7370:10692..11203+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7370.15342.1 ID=mRNA_H-paniculata_contig7370.15342.1|Name=mRNA_H-paniculata_contig7370.15342.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=512bp|location=Sequence derived from alignment at H-paniculata_contig7370:10692..11203+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATACAGTTTGCTCCCCATTTCTGTCTTTGCCAACATAGCGGCCCATGGTC
CATATCTGTCTCGATTCACACTTTCCAAATCTTTCGACTACTACTCATAT
CACGAGCAGCTGCTCTGCTCAAACAATTGCCTCCCACTTCACACCCCACT
GTACGGCACTGCACTTGCAAATCATGTACCCGCTACATCTCGAATGGGTC
CTCACTGTCTTCCGAAACGCATTACGAAATACTATCTCCGATCGACGTAA
AAATGCTCGAGGTACAACCCTGCAAGAACCTAGCCGCCAATGGCCCTTTA
GTCCGCCGCAGCTGGAATACCCGACGCTGCCATGGGGAGCAATCCGATGT
CCACACTCACGAGTTCAAGCTGTGAAGGCCCGAACGTTCTTCTGTCTCAC
CCACGACCAAACCTCTCCTTTCTTTCCTTTGTCAACCAATTGCATTGTGG
TGTCAAAGCACAAAAATGGATGGTCGGGGCTGCTTCTCCTGAGACCTTCA
AGGCTGAGCTGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig7370:10692..11203+

>mRNA_H-paniculata_contig7370.15342.1 ID=mRNA_H-paniculata_contig7370.15342.1|Name=mRNA_H-paniculata_contig7370.15342.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at H-paniculata_contig7370:10692..11203+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCCATATCTGTCTCGATTCACACTTTCCAAATCTTTCGACTACTAC
TCATATCACGAGCAGCTGCTCTGCTCAAACAATTGCCTCCCACTTCACAC
CCCACTGTACGGCACTGCACTTGCAAATCATGTACCCGCTACATCTCGAA
TGGGTCCTCACTGTCTTCCGAAACGCATTACGAAATACTATCTCCGATCG
ACGTAAAAATGCTCGAGGTACAACCCTGCAAGAACCTAGCCGCCAATGGC
CCTTTAGTCCGCCGCAGCTGGAATACCCGACGCTGCCATGGGGAGCAATC
CGATGTCCACACTCACGAGTTCAAGCTGTGAAGGCCCGAACGTTCTTCTG
TCTCACCCACGACCAAACCTCTCCTTTCTTTCCTTTGTCAACCAATTGCA
TTGTGGTGTCAAAGCACAAAAATGGATGGTCGGGGCTGCTTCTCCTGAGA
CCTTCAAGGCTGAGCTGCATGGTCCATATCTGTCTCGATTCACACTTTCC
AAATCTTTCGACTACTACTCATATCACGAGCAGCTGCTCTGCTCAAACAA
TTGCCTCCCACTTCACACCCCACTGTACGGCACTGCACTTGCAAATCATG
TACCCGCTACATCTCGAATGGGTCCTCACTGTCTTCCGAAACGCATTACG
AAATACTATCTCCGATCGACGTAAAAATGCTCGAGGTACAACCCTGCAAG
AACCTAGCCGCCAATGGCCCTTTAGTCCGCCGCAGCTGGAATACCCGACG
CTGCCATGGGGAGCAATCCGATGTCCACACTCACGAGTTCAAGCTGTGAA
GGCCCGAACGTTCTTCTGTCTCACCCACGACCAAACCTCTCCTTTCTTTC
CTTTGTCAACCAATTGCATTGTGGTGTCAAAGCACAAAAATGGATGGTCG
GGGCTGCTTCTCCTGAGACCTTCAAGGCTGAGCTGC
back to top