mRNA_H-paniculata_contig7366.15335.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7366.15335.1
Unique NamemRNA_H-paniculata_contig7366.15335.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7366.15335.1 vs. uniprot
Match: A0A7D9DKF3_PARCT (Proton myo-inositol cotransporter-like isoform X1 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9DKF3_PARCT)

HSP 1 Score: 71.6 bits (174), Expect = 1.260e-12
Identity = 39/78 (50.00%), Postives = 49/78 (62.82%), Query Frame = 1 
Query:   52 IVLMDFTFIGGGAF-------LFFARTTGGWRYMFGLSAVLATAQLIGMMFMPRSPRWLFSKGKHAEAKAVLVQIRSS 264
            +V ++  FI GG F       +F +    GWRYM GLS V A   LIG++FMP SPRWL SKGK  +AK VL +IR+S
Sbjct:  162 LVTLNNVFITGGQFVASVVDGIFASDKINGWRYMLGLSGVPAVIMLIGLLFMPESPRWLVSKGKVDKAKKVLQRIRNS 239
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BLAST of mRNA_H-paniculata_contig7366.15335.1 vs. uniprot
Match: A0A7E6F401_OCTVU (solute carrier family 2, facilitated glucose transporter member 10 isoform X1 n=5 Tax=Octopus vulgaris TaxID=6645 RepID=A0A7E6F401_OCTVU)

HSP 1 Score: 70.1 bits (170), Expect = 4.450e-12
Identity = 51/150 (34.00%), Postives = 65/150 (43.33%), Query Frame = 1 
Query:    1 GAIVSGYLTDGLGRWLTIVLMDFTFIGGGAFLFFAR-----------------------------------------------TTG----------------GWRYMFGLSAVLATAQLIGMMFMPRSPRWLFSKGKHAEAKAVLVQIRS 261
            GA+VSG+L D LGRW+TIVL  F FI G   +  A+                                               T G                GWRYMFGLS+VLA  Q++ M+F+P+SPR+L  KGK A+A AVL +  S
Sbjct:  209 GALVSGFLVDLLGRWITIVLNGFFFILGSLTIALAQSFTILVIGRLVLGFAISVSSVAECVYISEISPAKRRGQLVSLNEFGITIGLVLSYLINFLYINVAHGWRYMFGLSSVLAVLQILMMLFLPQSPRYLVLKGKEAQAAAVLRRFHS 358
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BLAST of mRNA_H-paniculata_contig7366.15335.1 vs. uniprot
Match: F7GCT1_MONDO (MFS domain-containing protein n=2 Tax=Monodelphis domestica TaxID=13616 RepID=F7GCT1_MONDO)

HSP 1 Score: 68.2 bits (165), Expect = 2.110e-11
Identity = 35/79 (44.30%), Postives = 47/79 (59.49%), Query Frame = 1 
Query:   52 IVLMDFTFIGGGAFL-------FFARTTGGWRYMFGLSAVLATAQLIGMMFMPRSPRWLFSKGKHAEAKAVLVQIRSSQ 267
            +V ++  FI GG F        F      GWRYM GLSA+ AT Q +G +F+P SPRWL  KG+  +A+ +L QIR +Q
Sbjct:  212 LVTVNTLFITGGQFFASIVDGAFSYLPKDGWRYMLGLSAIPATIQFLGFLFLPESPRWLIQKGQTQKARRILSQIRGNQ 290
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BLAST of mRNA_H-paniculata_contig7366.15335.1 vs. uniprot
Match: A0A7S3WZI0_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WZI0_EMIHU)

HSP 1 Score: 67.4 bits (163), Expect = 2.940e-11
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:  100 FARTTGGWRYMFGLSAVLATAQLIGMMFMPRSPRWLFSKGKHAEAKAVLVQIR 258
            FA    GWRYM GL+AV A  QL+GM FMP SPRWL  +G+  EA+A +++ R
Sbjct:  220 FALVPAGWRYMLGLAAVPAVVQLVGMAFMPESPRWLLEQGRRGEARAAMLRSR 272
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BLAST of mRNA_H-paniculata_contig7366.15335.1 vs. uniprot
Match: V9E928_PHYPR (MFS domain-containing protein n=7 Tax=Phytophthora TaxID=4783 RepID=V9E928_PHYPR)

HSP 1 Score: 67.0 bits (162), Expect = 5.310e-11
Identity = 35/78 (44.87%), Postives = 47/78 (60.26%), Query Frame = 1 
Query:   52 IVLMDFTFIGGGAFL------FFARTTGGWRYMFGLSAVLATAQLIGMMFMPRSPRWLFSKGKHAEAKAVLVQIRSSQ 267
            +V ++   I GG F         A T GGWRYM GL+A+ A  Q  G + +P SPR+L SKG+  EA+AVL++IR  Q
Sbjct:  171 LVSLNSALITGGQFFASVLDALLADTEGGWRYMLGLAAIPAIVQFAGFLVLPESPRYLISKGRDDEARAVLLKIRGEQ 248
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BLAST of mRNA_H-paniculata_contig7366.15335.1 vs. uniprot
Match: UPI00098DFC58 (LOW QUALITY PROTEIN: probable inositol transporter 2 n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098DFC58)

HSP 1 Score: 65.9 bits (159), Expect = 1.350e-10
Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 1 
Query:    1 GAIVS--GYLTDGLGRWLTIVLMDFTFIGGGAFLFFARTTGGWRYMFGLSAVLATAQLIGMMFMPRSPRWLFSKGKHAEAKAVLVQI 255
            GA+VS  G+L  G G++L+ ++           L F +  G WR+M G++ + A  Q I MMF+P SPRWL+ KGK AEAK++L +I
Sbjct:  151 GALVSTNGFLITG-GQFLSYLIN----------LAFTKAPGTWRWMLGIAGIPALLQFILMMFLPESPRWLYRKGKEAEAKSILKKI 226
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BLAST of mRNA_H-paniculata_contig7366.15335.1 vs. uniprot
Match: UPI001B88ACCA (proton myo-inositol cotransporter-like n=2 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88ACCA)

HSP 1 Score: 65.9 bits (159), Expect = 1.360e-10
Identity = 34/74 (45.95%), Postives = 45/74 (60.81%), Query Frame = 1 
Query:   43 WLTIVLMDFTFIGGGAFLFFARTTGGWRYMFGLSAVLATAQLIGMMFMPRSPRWLFSKGKHAEAKAVLVQIRSS 264
            ++TI ++    I GG   F      GWRYM GL+ V +  Q  G  F+P SPRWL SKG+  EA+AVLV+IR +
Sbjct:  168 FITIGIVISALIAGG---FSEMKPDGWRYMLGLAGVPSLIQFCGFFFLPESPRWLVSKGRDVEARAVLVKIRGT 238
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BLAST of mRNA_H-paniculata_contig7366.15335.1 vs. uniprot
Match: K1RMM2_CRAGI (Solute carrier family 2, facilitated glucose transporter member 12 n=3 Tax=Crassostrea gigas TaxID=29159 RepID=K1RMM2_CRAGI)

HSP 1 Score: 65.5 bits (158), Expect = 1.850e-10
Identity = 30/56 (53.57%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:  100 FARTTGGWRYMFGLSAVLATAQLIGMMFMPRSPRWLFSKGKHAEAKAVLVQIRSSQ 267
            F   T GWRYMFGLSA+ A  Q +GM F+P+SPR+L   GK AEA+ VL+++R  +
Sbjct:  212 FINVTEGWRYMFGLSAIPAAIQGVGMFFLPKSPRFLALTGKDAEAEEVLLKLRDGR 267
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BLAST of mRNA_H-paniculata_contig7366.15335.1 vs. uniprot
Match: A0A8B8CYR3_CRAVI (LOW QUALITY PROTEIN: solute carrier family 2, facilitated glucose transporter member 10-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8CYR3_CRAVI)

HSP 1 Score: 65.5 bits (158), Expect = 1.860e-10
Identity = 30/56 (53.57%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:  100 FARTTGGWRYMFGLSAVLATAQLIGMMFMPRSPRWLFSKGKHAEAKAVLVQIRSSQ 267
            F   T GWRYMFGLSA+ A  Q IGM F+P+SPR+L   G+ AEA+ VL+++R  +
Sbjct:  212 FIDVTEGWRYMFGLSAIPAAVQGIGMFFLPKSPRYLXLMGREAEAEEVLLKLRDGK 267
[Close]
BLAST of mRNA_H-paniculata_contig7366.15335.1 vs. uniprot
Match: UPI0014589E6E (solute carrier family 2, facilitated glucose transporter member 10-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI0014589E6E)

HSP 1 Score: 65.1 bits (157), Expect = 2.530e-10
Identity = 30/54 (55.56%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:   97 FFARTTGGWRYMFGLSAVLATAQLIGMMFMPRSPRWLFSKGKHAEAKAVLVQIR 258
            FF +   GWRYMFGLSA+ A  Q IGMMF+P+SPR+L    + A+AK VL+++R
Sbjct:  216 FFIQVDNGWRYMFGLSAIPAVVQGIGMMFLPKSPRFLMLTRQEAKAKEVLMKLR 269
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7366.15335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7D9DKF3_PARCT1.260e-1250.00Proton myo-inositol cotransporter-like isoform X1 ... [more]
A0A7E6F401_OCTVU4.450e-1234.00solute carrier family 2, facilitated glucose trans... [more]
F7GCT1_MONDO2.110e-1144.30MFS domain-containing protein n=2 Tax=Monodelphis ... [more]
A0A7S3WZI0_EMIHU2.940e-1154.72Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
V9E928_PHYPR5.310e-1144.87MFS domain-containing protein n=7 Tax=Phytophthora... [more]
UPI00098DFC581.350e-1042.53LOW QUALITY PROTEIN: probable inositol transporter... [more]
UPI001B88ACCA1.360e-1045.95proton myo-inositol cotransporter-like n=2 Tax=Gig... [more]
K1RMM2_CRAGI1.850e-1053.57Solute carrier family 2, facilitated glucose trans... [more]
A0A8B8CYR3_CRAVI1.860e-1053.57LOW QUALITY PROTEIN: solute carrier family 2, faci... [more]
UPI0014589E6E2.530e-1055.56solute carrier family 2, facilitated glucose trans... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7366contigH-paniculata_contig7366:264..1511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.6
Seed ortholog evalue4.9e-20
Seed eggNOG ortholog2880.D7FRY3
Preferred nameSLC2A12
KEGG koko:K08147,ko:K08149
KEGG TC2.A.1.1,2.A.1.1.59
Hectar predicted targeting categoryother localisation
GOsGO:0003008,GO:0003013,GO:0003015,GO:0003170,GO:0003179,GO:0003674,GO:0005215,GO:0005351,GO:0005355,GO:0005402,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0007275,GO:0007507,GO:0008015,GO:0008150,GO:0008324,GO:0008643,GO:0008645,GO:0009653,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010243,GO:0015075,GO:0015077,GO:0015078,GO:0015144,GO:0015145,GO:0015149,GO:0015291,GO:0015293,GO:0015294,GO:0015295,GO:0015318,GO:0015672,GO:0015749,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022890,GO:0031224,GO:0031226,GO:0032501,GO:0032502,GO:0032868,GO:0032869,GO:0032870,GO:0034219,GO:0034220,GO:0042221,GO:0043434,GO:0044381,GO:0044425,GO:0044459,GO:0044464,GO:0046323,GO:0048513,GO:0048731,GO:0048856,GO:0050896,GO:0051119,GO:0051179,GO:0051234,GO:0051716,GO:0055056,GO:0055085,GO:0060047,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071944,GO:0072359,GO:0098655,GO:0098660,GO:0098662,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902600,GO:1904659
EggNOG free text desc.glucose import
EggNOG OGsKOG0254@1,KOG0254@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons2
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930899.9690936-CDS-H-paniculata_contig7366:263..4151622930899.9690936-CDS-H-paniculata_contig7366:263..415Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7366 264..415 -
1691481502.1391988-CDS-H-paniculata_contig7366:263..4151691481502.1391988-CDS-H-paniculata_contig7366:263..415Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7366 264..415 -
1622930899.9871573-CDS-H-paniculata_contig7366:1396..15111622930899.9871573-CDS-H-paniculata_contig7366:1396..1511Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7366 1397..1511 -
1691481502.1545253-CDS-H-paniculata_contig7366:1396..15111691481502.1545253-CDS-H-paniculata_contig7366:1396..1511Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7366 1397..1511 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7366.15335.1prot_H-paniculata_contig7366.15335.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7366 264..1511 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7366.15335.1

>prot_H-paniculata_contig7366.15335.1 ID=prot_H-paniculata_contig7366.15335.1|Name=mRNA_H-paniculata_contig7366.15335.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
GAIVSGYLTDGLGRWLTIVLMDFTFIGGGAFLFFARTTGGWRYMFGLSAV
LATAQLIGMMFMPRSPRWLFSKGKHAEAKAVLVQIRSSQ
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mRNA from alignment at H-paniculata_contig7366:264..1511-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7366.15335.1 ID=mRNA_H-paniculata_contig7366.15335.1|Name=mRNA_H-paniculata_contig7366.15335.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1248bp|location=Sequence derived from alignment at H-paniculata_contig7366:264..1511- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGCCATCGTTTCGGGCTATTTAACTGATGGTCTTGGTCGATGGCTTAC
CATCGTACTCATGGACTTTACATTCATCGGTGGTGGTGCATTTCTCTTTT
TCGCTCGAACAACAGGTAAACAACAGGTATTGGATAGTTAGTATCACTCC
ACGCCGACACAGAGTAATGCTCAACGCTTAATGTATGCCAGCTACATGAG
GGTTTTGATTGTAGTCTGGGCACTCGCTCGCCGCTATCAGCGTTGTCTGC
AAATCTAGACGAGGGACTTTCTATTATACGTATGATGGAATGGAACATGA
TTTTTTTTTACTTGAAAAAACACGAGAGAGTGTATTTCACCAATGGTCTG
TGTGTCTGCGATATACACTATGTTTCATTATTGTAGCCTAAAGGCCTCTG
TGTGGGAAATCTTAATGGCTTGTTTGTAGACTGCAGACTCGTGATATCTC
CGTGACTACACTAAACACTACACTATATTTTCACGCTGTGGAGTTTTGTT
GTGTTCGTCTTATCTTTTCTTATATTATGTCATTAGACATGATCTTGATA
GGACGATTCATTGTGGGCGCAGCCGTGGCAATATCGGCAGTAGCAGACGT
ATCATATTTGGCAGAGCTGGCACCAAGAAGCACGAGGGGTGCAATGGTGA
GCGCCAATGAGCTTGCTATATCGCTGGGAGTTCTCGCGTCCTTCCTCGCC
GGGCACCTTTTGCGGCGCGTACCTGGTAAGTCACGGTGAGTCTCGTCAGT
CGTGTATGTCTCTAAACTCTTACTAGCACTTACCACGCGACCAATTTCAG
CTTCTATTTGAAGTGCTGATCTGAGCTGAGTGTGGTTGCGACCGATTGCG
GCAACAGGTCGAAGTGAGTGCGGAGGTATGGATAATTCGAGCTCCTATTT
TTTGCCCCGCTGTACTGTTACGTTTACGTTTACGGGGTAACCAACGGCCT
ACAGAGGAAGGGAAAATGGTTGATATCACCTGACAACCAAGGTTTTTTGT
CGACGAATAATATGGCTCCTTTAAATTAATTTGTTGACCAACGAGAAAAT
TGCGATCACCTGGTCCCTTTCTCTCTGGCTTGATGATCTCATGCAGGTGG
ATGGCGGTATATGTTCGGACTATCAGCCGTGTTGGCGACGGCCCAGCTCA
TTGGAATGATGTTCATGCCTCGAAGCCCAAGGTGGTTATTCTCCAAGGGG
AAACATGCTGAGGCGAAGGCTGTCTTGGTCCAGATCCGAAGTTCACAG
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Coding sequence (CDS) from alignment at H-paniculata_contig7366:264..1511-

>mRNA_H-paniculata_contig7366.15335.1 ID=mRNA_H-paniculata_contig7366.15335.1|Name=mRNA_H-paniculata_contig7366.15335.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig7366:264..1511- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGCCATCGTTTCGGGCTATTTAACTGATGGTCTTGGTCGATGGCTTAC
CATCGTACTCATGGACTTTACATTCATCGGTGGTGGTGCATTTCTCTTTT
TCGCTCGAACAACAGGGAGCCATCGTTTCGGGCTATTTAACTGATGGTCT
TGGTCGATGGCTTACCATCGTACTCATGGACTTTACATTCATCGGTGGTG
GTGCATTTCTCTTTTTCGCTCGAACAACAGGTGGATGGCGGTATATGTTC
GGACTATCAGCCGTGTTGGCGACGGCCCAGCTCATTGGAATGATGTTCAT
GCCTCGAAGCCCAAGGTGGTTATTCTCCAAGGGGAAACATGCTGAGGCGA
AGGCTGTCTTGGTCCAGATCCGAAGTTCACAGGTGGATGGCGGTATATGT
TCGGACTATCAGCCGTGTTGGCGACGGCCCAGCTCATTGGAATGATGTTC
ATGCCTCGAAGCCCAAGGTGGTTATTCTCCAAGGGGAAACATGCTGAGGC
GAAGGCTGTCTTGGTCCAGATCCGAAGTTCACAG
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