mRNA_H-paniculata_contig73650.15334.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig73650.15334.1
Unique NamemRNA_H-paniculata_contig73650.15334.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig73650.15334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig73650contigH-paniculata_contig73650:359..610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score60.5
Seed ortholog evalue4.4e-07
Seed eggNOG ortholog3827.XP_004513812.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cysteine-rich RLK (RECEPTOR-like protein kinase) 8
EggNOG OGs37RIF@33090,3G9AM@35493,4JTRP@91835,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Exons1
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930899.9054503-CDS-H-paniculata_contig73650:358..6101622930899.9054503-CDS-H-paniculata_contig73650:358..610Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig73650 359..610 +
1691481502.12404-CDS-H-paniculata_contig73650:358..6101691481502.12404-CDS-H-paniculata_contig73650:358..610Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig73650 359..610 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig73650.15334.1prot_H-paniculata_contig73650.15334.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig73650 359..610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig73650.15334.1

>prot_H-paniculata_contig73650.15334.1 ID=prot_H-paniculata_contig73650.15334.1|Name=mRNA_H-paniculata_contig73650.15334.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
VTGEKEHWSSDTGATYRMTSDETAFEDYTPALPGTMREIANGTFVAVEGW
GRLVLLVNQPGGKSRVATLNRVAHVPKLGRNLIS
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mRNA from alignment at H-paniculata_contig73650:359..610+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig73650.15334.1 ID=mRNA_H-paniculata_contig73650.15334.1|Name=mRNA_H-paniculata_contig73650.15334.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=252bp|location=Sequence derived from alignment at H-paniculata_contig73650:359..610+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGACCGGAGAGAAGGAACACTGGAGCTCAGACACCGGCGCGACATACCG
CATGACATCGGATGAGACTGCGTTCGAGGACTACACTCCAGCGCTCCCGG
GGACCATGCGTGAAATCGCCAACGGGACATTCGTGGCGGTAGAGGGGTGG
GGACGCCTTGTGCTTCTAGTAAATCAACCGGGAGGAAAATCACGGGTAGC
AACGTTAAACAGGGTTGCCCACGTACCCAAGCTCGGGCGTAATTTAATCT
CC
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Coding sequence (CDS) from alignment at H-paniculata_contig73650:359..610+

>mRNA_H-paniculata_contig73650.15334.1 ID=mRNA_H-paniculata_contig73650.15334.1|Name=mRNA_H-paniculata_contig73650.15334.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig73650:359..610+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGACCGGAGAGAAGGAACACTGGAGCTCAGACACCGGCGCGACATACCG
CATGACATCGGATGAGACTGCGTTCGAGGACTACACTCCAGCGCTCCCGG
GGACCATGCGTGAAATCGCCAACGGGACATTCGTGGCGGTAGAGGGGTGG
GGACGCCTTGTGCTTCTAGTAAATCAACCGGGAGGAAAATCACGGGTAGC
AACGTTAAACAGGGTTGCCCACGTACCCAAGCTCGGGCGTAATTTAATCT
CCGTGACCGGAGAGAAGGAACACTGGAGCTCAGACACCGGCGCGACATAC
CGCATGACATCGGATGAGACTGCGTTCGAGGACTACACTCCAGCGCTCCC
GGGGACCATGCGTGAAATCGCCAACGGGACATTCGTGGCGGTAGAGGGGT
GGGGACGCCTTGTGCTTCTAGTAAATCAACCGGGAGGAAAATCACGGGTA
GCAACGTTAAACAGGGTTGCCCACGTACCCAAGCTCGGGCGTAATTTAAT
CTCC
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