mRNA_H-paniculata_contig73548.15327.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig73548.15327.1
Unique NamemRNA_H-paniculata_contig73548.15327.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig73548.15327.1 vs. uniprot
Match: A0A165M5Y1_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Neolentinus lepideus HHB14362 ss-1 TaxID=1314782 RepID=A0A165M5Y1_9AGAM)

HSP 1 Score: 55.5 bits (132), Expect = 2.070e-7
Identity = 28/78 (35.90%), Postives = 43/78 (55.13%), Query Frame = 1 
Query:   76 HWNSDIGATDHMTSDKTAFEDYTPALPGTMCEIANGTFVPVEGWGRLVLRVSQPGGKSRVAMLNRVAHVPELGRNLIS 309
            +WN+D GAT HMT  +  F  Y+P +      + N T +   G G ++  +     K+ V +L+ V HVP+LG NL+S
Sbjct:   62 NWNTDTGATSHMTPHRHWFASYSPHI--IPVRLTNDTIIYTAGMGSVMFELVLGESKAPVVVLHNVLHVPQLGSNLLS 137
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BLAST of mRNA_H-paniculata_contig73548.15327.1 vs. uniprot
Match: A0A165MYY0_9AGAM (Uncharacterized protein (Fragment) n=10 Tax=Neolentinus lepideus HHB14362 ss-1 TaxID=1314782 RepID=A0A165MYY0_9AGAM)

HSP 1 Score: 54.3 bits (129), Expect = 1.050e-6
Identity = 29/78 (37.18%), Postives = 43/78 (55.13%), Query Frame = 1 
Query:   76 HWNSDIGATDHMTSDKTAFEDYTPALPGTMCEIANGTFVPVEGWGRLVLRVSQPGGKSRVAMLNRVAHVPELGRNLIS 309
            +WN+D GAT HMT  +  F  Y+P +      +AN T +   G G ++        K+ V +L+ V HVP+LG NL+S
Sbjct:   99 NWNTDTGATSHMTPHRHWFASYSPHI--IPVRLANDTSIYTAGMGSVMFEPVLGESKAPVVVLHDVLHVPQLGSNLLS 174
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BLAST of mRNA_H-paniculata_contig73548.15327.1 vs. uniprot
Match: A0A165M6L6_9AGAM (gag_pre-integrs domain-containing protein n=1 Tax=Neolentinus lepideus HHB14362 ss-1 TaxID=1314782 RepID=A0A165M6L6_9AGAM)

HSP 1 Score: 54.7 bits (130), Expect = 1.110e-6
Identity = 28/76 (36.84%), Postives = 42/76 (55.26%), Query Frame = 1 
Query:   76 HWNSDIGATDHMTSDKTAFEDYTPALPGTMCEIANGTFVPVEGWGRLVLRVSQPGGKSRVAMLNRVAHVPELGRNL 303
            +WN++ GAT HMT  +  F  Y+P +      +AN T +   G G ++      G K+ V +L+ V HVP+LG NL
Sbjct:   45 NWNTNTGATSHMTPHRHWFASYSPHI--IPVRLANDTIIYTAGMGSVIFEPVLGGSKAPVVVLHDVLHVPQLGSNL 118
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BLAST of mRNA_H-paniculata_contig73548.15327.1 vs. uniprot
Match: A0A284S1T9_ARMOS (Integrase catalytic domain-containing protein n=1 Tax=Armillaria ostoyae TaxID=47428 RepID=A0A284S1T9_ARMOS)

HSP 1 Score: 53.5 bits (127), Expect = 4.850e-6
Identity = 31/78 (39.74%), Postives = 41/78 (52.56%), Query Frame = 1 
Query:   76 HWNSDIGATDHMTSDKTAFEDYTPALPGTMCEIANGTFVPVEGWGRLVLRVSQPGGKSRVAMLNRVAHVPELGRNLIS 309
            HWN+D GA+ HMT  +  F  Y+P +      +A+ T +  EG G +VL     G KS V  L    HVP L  NL+S
Sbjct:  310 HWNTDTGASRHMTPHRHWFNVYSPHI--VPIRLADNTVIYSEGIGTVVLEPEVEGEKSTVVELLDTLHVPALRNNLLS 385
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BLAST of mRNA_H-paniculata_contig73548.15327.1 vs. uniprot
Match: A0A6P4MA83_GOSAR (uncharacterized protein LOC108458679 n=1 Tax=Gossypium arboreum TaxID=29729 RepID=A0A6P4MA83_GOSAR)

HSP 1 Score: 51.6 bits (122), Expect = 2.190e-5
Identity = 29/77 (37.66%), Postives = 41/77 (53.25%), Query Frame = 1 
Query:   79 WNSDIGATDHMTSDKTAFEDYTPALPGTMCEIANGTFVPVEGWGRLVLRVSQPGGKSRVAMLNRVAHVPELGRNLIS 309
            W  D GA DHM  + T F+ YTP    +   IA+G++ PV G G++ L        ++   L+ V HVP L  NL+S
Sbjct:  203 WILDSGAFDHMIGNSTLFQTYTPCHNQSRIHIADGSYSPVAGVGKIQL--------TKKNSLDEVLHVPNLSCNLLS 271
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BLAST of mRNA_H-paniculata_contig73548.15327.1 vs. uniprot
Match: UPI0007AF99E3 (uncharacterized protein LOC107611507 n=1 Tax=Arachis ipaensis TaxID=130454 RepID=UPI0007AF99E3)

HSP 1 Score: 51.6 bits (122), Expect = 2.310e-5
Identity = 28/77 (36.36%), Postives = 40/77 (51.95%), Query Frame = 1 
Query:   79 WNSDIGATDHMTSDKTAFEDYTPALPGTMCEIANGTFVPVEGWGRLVLRVSQPGGKSRVAMLNRVAHVPELGRNLIS 309
            W  D GATD+MT    +F  YT +       +ANG+ +P+ G+G + L+ S          L  V HVP+L  NL+S
Sbjct:  216 WIVDSGATDYMTPHSLSFSSYTNSYGHKQITVANGSHIPITGYGNIHLQPS--------IHLKNVLHVPKLSTNLMS 284
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BLAST of mRNA_H-paniculata_contig73548.15327.1 vs. uniprot
Match: A0A165JNU6_9AGAM (Uncharacterized protein (Fragment) n=2 Tax=Neolentinus lepideus HHB14362 ss-1 TaxID=1314782 RepID=A0A165JNU6_9AGAM)

HSP 1 Score: 48.9 bits (115), Expect = 8.550e-5
Identity = 26/72 (36.11%), Postives = 38/72 (52.78%), Query Frame = 1 
Query:   76 HWNSDIGATDHMTSDKTAFEDYTPALPGTMCEIANGTFVPVEGWGRLVLRVSQPGGKSRVAMLNRVAHVPEL 291
            +WN+D GAT HMT  +  F  Y+P +      +AN T +   G G ++      G K  V +L+ V HVP+L
Sbjct:   98 NWNTDTGATSHMTPHRHWFASYSPHI--IPVRLANDTIIYTAGMGSVMFEPVLGGSKVPVVVLHDVLHVPQL 167
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig73548.15327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A165M5Y1_9AGAM2.070e-735.90Uncharacterized protein (Fragment) n=1 Tax=Neolent... [more]
A0A165MYY0_9AGAM1.050e-637.18Uncharacterized protein (Fragment) n=10 Tax=Neolen... [more]
A0A165M6L6_9AGAM1.110e-636.84gag_pre-integrs domain-containing protein n=1 Tax=... [more]
A0A284S1T9_ARMOS4.850e-639.74Integrase catalytic domain-containing protein n=1 ... [more]
A0A6P4MA83_GOSAR2.190e-537.66uncharacterized protein LOC108458679 n=1 Tax=Gossy... [more]
UPI0007AF99E32.310e-536.36uncharacterized protein LOC107611507 n=1 Tax=Arach... [more]
A0A165JNU6_9AGAM8.550e-536.11Uncharacterized protein (Fragment) n=2 Tax=Neolent... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig73548contigH-paniculata_contig73548:330..638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score60.1
Seed ortholog evalue7.1e-07
Seed eggNOG ortholog4098.XP_009591718.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs2AXHF@1,2S012@2759,37VRW@33090,3GJW0@35493
COG Functional cat.S
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930899.1954148-CDS-H-paniculata_contig73548:329..6381622930899.1954148-CDS-H-paniculata_contig73548:329..638Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig73548 330..638 +
1691481501.843828-CDS-H-paniculata_contig73548:329..6381691481501.843828-CDS-H-paniculata_contig73548:329..638Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig73548 330..638 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig73548.15327.1prot_H-paniculata_contig73548.15327.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig73548 330..638 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig73548.15327.1

>prot_H-paniculata_contig73548.15327.1 ID=prot_H-paniculata_contig73548.15327.1|Name=mRNA_H-paniculata_contig73548.15327.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
GPKAVTAETDDRKTTDNPAVTREKEHWNSDIGATDHMTSDKTAFEDYTPA
LPGTMCEIANGTFVPVEGWGRLVLRVSQPGGKSRVAMLNRVAHVPELGRN
LIS
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mRNA from alignment at H-paniculata_contig73548:330..638+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig73548.15327.1 ID=mRNA_H-paniculata_contig73548.15327.1|Name=mRNA_H-paniculata_contig73548.15327.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=309bp|location=Sequence derived from alignment at H-paniculata_contig73548:330..638+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGACCCAAGGCAGTGACGGCCGAAACTGACGATCGCAAGACAACAGACAA
CCCTGCCGTGACCAGAGAGAAGGAACACTGGAATTCAGACATCGGCGCGA
CAGACCATATGACGTCGGATAAGACTGCGTTCGAGGACTACACTCCAGCG
CTCCCGGGGACCATGTGTGAAATCGCCAACGGGACATTCGTGCCTGTAGA
GGGGTGGGGACGCCTTGTGCTTCGAGTAAGTCAACCGGGGGGAAAATCGC
GGGTAGCAATGTTAAACAGGGTTGCCCACGTACCCGAGCTCGGGCGCAAT
TTAATCTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig73548:330..638+

>mRNA_H-paniculata_contig73548.15327.1 ID=mRNA_H-paniculata_contig73548.15327.1|Name=mRNA_H-paniculata_contig73548.15327.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig73548:330..638+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGACCCAAGGCAGTGACGGCCGAAACTGACGATCGCAAGACAACAGACAA
CCCTGCCGTGACCAGAGAGAAGGAACACTGGAATTCAGACATCGGCGCGA
CAGACCATATGACGTCGGATAAGACTGCGTTCGAGGACTACACTCCAGCG
CTCCCGGGGACCATGTGTGAAATCGCCAACGGGACATTCGTGCCTGTAGA
GGGGTGGGGACGCCTTGTGCTTCGAGTAAGTCAACCGGGGGGAAAATCGC
GGGTAGCAATGTTAAACAGGGTTGCCCACGTACCCGAGCTCGGGCGCAAT
TTAATCTCCGGACCCAAGGCAGTGACGGCCGAAACTGACGATCGCAAGAC
AACAGACAACCCTGCCGTGACCAGAGAGAAGGAACACTGGAATTCAGACA
TCGGCGCGACAGACCATATGACGTCGGATAAGACTGCGTTCGAGGACTAC
ACTCCAGCGCTCCCGGGGACCATGTGTGAAATCGCCAACGGGACATTCGT
GCCTGTAGAGGGGTGGGGACGCCTTGTGCTTCGAGTAAGTCAACCGGGGG
GAAAATCGCGGGTAGCAATGTTAAACAGGGTTGCCCACGTACCCGAGCTC
GGGCGCAATTTAATCTCC
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