mRNA_H-paniculata_contig73544.15326.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig73544.15326.1
Unique NamemRNA_H-paniculata_contig73544.15326.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig73544.15326.1 vs. uniprot
Match: UPI0010172210 (uncharacterized protein LOC114170345 n=1 Tax=Vigna unguiculata TaxID=3917 RepID=UPI0010172210)

HSP 1 Score: 61.6 bits (148), Expect = 1.970e-10
Identity = 32/77 (41.56%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    1 ETWRSDSAATFHMTGSKEYMRDIRQS-NDQVRMGDYQLIDVEGVGTLTIVFPSVNGEVTLRLEDVAYVPRLKYNLLS 228
            E W  D+  + HMTG KE++ +I  S ++++++ D  +I  EGVG + I     +G+ T+ +EDV YVP +KYNLLS
Sbjct:   12 ENWFLDTRCSNHMTGHKEWLSNIDTSRSNKIKLADDNMIRAEGVGNVVI---KKDGKETMVIEDVLYVPGIKYNLLS 85          
BLAST of mRNA_H-paniculata_contig73544.15326.1 vs. uniprot
Match: A0A6D2J390_9BRAS (CCHC-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2J390_9BRAS)

HSP 1 Score: 57.0 bits (136), Expect = 1.370e-7
Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    7 WRSDSAATFHMTGSKEYMRDIRQS-NDQVRMGDYQLIDVEGVGTLTIVFPSVNGEVTLRLEDVAYVPRLKYNLLSL 231
            W  D+ A+ HMTG++ Y ++I +S   +VR GD   +D++G G+  I+F S NGE  + L DV ++P LK N+ SL
Sbjct:  292 WYLDNGASNHMTGNRNYFKEIDESMTGKVRFGDDSRLDIKGKGS--ILFYSKNGEKKM-LADVYFIPELKSNITSL 364          
BLAST of mRNA_H-paniculata_contig73544.15326.1 vs. uniprot
Match: UPI001CDB8C50 (uncharacterized protein LOC122853856 n=1 Tax=Aphidius gifuensis TaxID=684658 RepID=UPI001CDB8C50)

HSP 1 Score: 55.1 bits (131), Expect = 6.540e-7
Identity = 30/81 (37.04%), Postives = 51/81 (62.96%), Query Frame = 1
Query:    1 ETWRSDSAATFHMTGSKEYMRD-IRQSNDQVRMGDYQLIDVEGVGTLTI-VFPSVNGE--VTLRLEDVAYVPRLKYNLLSL 231
            + W  DS A++HM+G KE+  + +++    +R+GD ++++    GT+ I VF   NGE  V + L +V ++P LKYNL S+
Sbjct:  287 DKWLFDSGASYHMSGRKEWFTNMVKKEKSLIRVGDGKVLETNLYGTINISVF---NGESWVKMSLNNVLFIPELKYNLFSM 364          
BLAST of mRNA_H-paniculata_contig73544.15326.1 vs. uniprot
Match: A0A8K0DN47_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0DN47_9COLE)

HSP 1 Score: 52.0 bits (123), Expect = 8.280e-6
Identity = 24/79 (30.38%), Postives = 46/79 (58.23%), Query Frame = 1
Query:    1 ETWRSDSAATFHMTGSKEYMRDIRQSND--QVRMGDYQLIDVEGVGTLTIVFPSVNGEVTLRLEDVAYVPRLKYNLLSL 231
            ETW +DS A+ HM+  KE+  +  + +   ++++G+  +I+  G G ++++       +   L DV YVP +K+NL S+
Sbjct:  289 ETWIADSGASEHMSNQKEWFENYYEFDKPTEIKIGNGSVINAHGKGKISVIAFDGQDYIPTELNDVLYVPDIKFNLFSI 367          
BLAST of mRNA_H-paniculata_contig73544.15326.1 vs. uniprot
Match: UPI00092E79E4 (uncharacterized protein LOC109352893 n=2 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092E79E4)

HSP 1 Score: 51.6 bits (122), Expect = 1.090e-5
Identity = 28/78 (35.90%), Postives = 45/78 (57.69%), Query Frame = 1
Query:    1 ETWRSDSAATFHMTGSKEYMRDIRQSN-DQVRMGDYQLIDVEGVGTLTIVFPSVNGEVTLRLEDVAYVPRLKYNLLSL 231
            E W  DS  + HMT  KE+++D   +   +V+  D   +  EG G++ I+    NG   + + +V YVP++KYNLLS+
Sbjct:  302 ELWYLDSGCSNHMTNHKEWLKDFDSTKKSRVKFADDSSLSAEGAGSVVIM--RKNGSKAI-VSNVLYVPKMKYNLLSI 376          
BLAST of mRNA_H-paniculata_contig73544.15326.1 vs. uniprot
Match: A0A4D8Y0Y1_SALSN (Uncharacterized protein n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8Y0Y1_SALSN)

HSP 1 Score: 50.4 bits (119), Expect = 2.810e-5
Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 1
Query:   19 SAATFHMTGSKEYMRDI-RQSNDQVRMGDYQLIDVEGVGTLTIVFPSVNGEVTLRLEDVAYVPRLKYNLLS 228
            S  + HMTG ++  RDI R    QV++G+ +L+DVEG GT+ +       + T  ++DV  VP+L  NLLS
Sbjct:   78 SGCSNHMTGDEKQFRDIDRTIKSQVKLGNGELVDVEGKGTIAVN----TNKGTRLIKDVMLVPKLDANLLS 144          
BLAST of mRNA_H-paniculata_contig73544.15326.1 vs. uniprot
Match: A0A8K0G8N2_9COLE (Uncharacterized protein n=2 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0G8N2_9COLE)

HSP 1 Score: 49.7 bits (117), Expect = 5.320e-5
Identity = 23/79 (29.11%), Postives = 46/79 (58.23%), Query Frame = 1
Query:    1 ETWRSDSAATFHMTGSKEYMRDIRQSND--QVRMGDYQLIDVEGVGTLTIVFPSVNGEVTLRLEDVAYVPRLKYNLLSL 231
            ETW +DS A+ H++  KE+  +  + +   ++++G+  +I+  G G ++++       +   L DV YVP +K+NL S+
Sbjct:  298 ETWIADSGASEHLSHQKEWFENYYEFDKPTEIKIGNGSVINAHGKGKISLIAFDGQDYILTELNDVLYVPDIKFNLFSI 376          
BLAST of mRNA_H-paniculata_contig73544.15326.1 vs. uniprot
Match: A0A438HJF5_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HJF5_VITVI)

HSP 1 Score: 49.7 bits (117), Expect = 5.450e-5
Identity = 32/75 (42.67%), Postives = 44/75 (58.67%), Query Frame = 1
Query:    7 WRSDSAATFHMTGSKEYMRDIRQS-NDQVRMGDYQLIDVEGVGTLTIVFPSVNGEVTLRLEDVAYVPRLKYNLLS 228
            W  DS  T HMTG+K    D+  + N QV+MG+  L++V+G GT+ I   +  G  T  + DV  VP L+ NLLS
Sbjct:   55 WFLDSGCTNHMTGNKNIFLDMDTTINSQVKMGNGDLVNVKGKGTVDI--QTKVG--TKYIRDVLLVPALEQNLLS 125          
BLAST of mRNA_H-paniculata_contig73544.15326.1 vs. uniprot
Match: A0A438I7J1_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438I7J1_VITVI)

HSP 1 Score: 49.7 bits (117), Expect = 5.480e-5
Identity = 32/75 (42.67%), Postives = 44/75 (58.67%), Query Frame = 1
Query:    7 WRSDSAATFHMTGSKEYMRDIRQS-NDQVRMGDYQLIDVEGVGTLTIVFPSVNGEVTLRLEDVAYVPRLKYNLLS 228
            W  DS  T HMTG+K    D+  + N QV+MG+  L++V+G GT+ I   +  G  T  + DV  VP L+ NLLS
Sbjct:  168 WFLDSGCTNHMTGNKNIFLDMDTTINSQVKMGNGDLVNVKGKGTIGI--QTKVG--TKYIRDVLLVPALEQNLLS 238          
BLAST of mRNA_H-paniculata_contig73544.15326.1 vs. uniprot
Match: A0A438CNJ5_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CNJ5_VITVI)

HSP 1 Score: 49.7 bits (117), Expect = 5.530e-5
Identity = 31/75 (41.33%), Postives = 42/75 (56.00%), Query Frame = 1
Query:    7 WRSDSAATFHMTGSKEYMRDIRQS-NDQVRMGDYQLIDVEGVGTLTIVFPSVNGEVTLRLEDVAYVPRLKYNLLS 228
            W  DS  T HMTG+K    D+  + N QV+MG+  L++V+G GT+ I         T  + DV  VP L+ NLLS
Sbjct:  260 WFLDSGCTNHMTGNKNIFLDMDTTINSQVKMGNGDLVNVKGKGTVGIQIKVG----TKYIRDVLLVPALEQNLLS 330          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig73544.15326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
UPI00101722101.970e-1041.56uncharacterized protein LOC114170345 n=1 Tax=Vigna... [more]
A0A6D2J390_9BRAS1.370e-742.11CCHC-type domain-containing protein n=1 Tax=Microt... [more]
UPI001CDB8C506.540e-737.04uncharacterized protein LOC122853856 n=1 Tax=Aphid... [more]
A0A8K0DN47_9COLE8.280e-630.38Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
UPI00092E79E41.090e-535.90uncharacterized protein LOC109352893 n=2 Tax=Lupin... [more]
A0A4D8Y0Y1_SALSN2.810e-540.85Uncharacterized protein n=1 Tax=Salvia splendens T... [more]
A0A8K0G8N2_9COLE5.320e-529.11Uncharacterized protein n=2 Tax=Ignelater luminosu... [more]
A0A438HJF5_VITVI5.450e-542.67Retrovirus-related Pol polyprotein from transposon... [more]
A0A438I7J1_VITVI5.480e-542.67Retrovirus-related Pol polyprotein from transposon... [more]
A0A438CNJ5_VITVI5.530e-541.33Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig73544contigH-paniculata_contig73544:388..636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930899.1427574-CDS-H-paniculata_contig73544:387..6361622930899.1427574-CDS-H-paniculata_contig73544:387..636Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig73544 388..636 +
1691481501.8331587-CDS-H-paniculata_contig73544:387..6361691481501.8331587-CDS-H-paniculata_contig73544:387..636Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig73544 388..636 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig73544.15326.1prot_H-paniculata_contig73544.15326.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig73544 388..636 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig73544.15326.1

>prot_H-paniculata_contig73544.15326.1 ID=prot_H-paniculata_contig73544.15326.1|Name=mRNA_H-paniculata_contig73544.15326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
ETWRSDSAATFHMTGSKEYMRDIRQSNDQVRMGDYQLIDVEGVGTLTIVF
PSVNGEVTLRLEDVAYVPRLKYNLLSLIVAHQN
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mRNA from alignment at H-paniculata_contig73544:388..636+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig73544.15326.1 ID=mRNA_H-paniculata_contig73544.15326.1|Name=mRNA_H-paniculata_contig73544.15326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=249bp|location=Sequence derived from alignment at H-paniculata_contig73544:388..636+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGACGTGGAGGAGTGATAGTGCAGCTACGTTTCACATGACCGGTTCAAA AGAGTATATGAGAGACATACGTCAGTCCAACGACCAGGTCCGAATGGGAG ACTATCAACTCATTGATGTGGAGGGTGTAGGTACTTTAACTATTGTCTTT CCGAGTGTGAACGGTGAAGTAACCCTGAGACTGGAAGACGTGGCGTATGT TCCAAGGTTAAAGTACAATCTGCTGTCTCTGATTGTAGCACACCAAAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig73544:388..636+

>mRNA_H-paniculata_contig73544.15326.1 ID=mRNA_H-paniculata_contig73544.15326.1|Name=mRNA_H-paniculata_contig73544.15326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig73544:388..636+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGACGTGGAGGAGTGATAGTGCAGCTACGTTTCACATGACCGGTTCAAA
AGAGTATATGAGAGACATACGTCAGTCCAACGACCAGGTCCGAATGGGAG
ACTATCAACTCATTGATGTGGAGGGTGTAGGTACTTTAACTATTGTCTTT
CCGAGTGTGAACGGTGAAGTAACCCTGAGACTGGAAGACGTGGCGTATGT
TCCAAGGTTAAAGTACAATCTGCTGTCTCTGATTGTAGCACACCAAAATG
AGACGTGGAGGAGTGATAGTGCAGCTACGTTTCACATGACCGGTTCAAAA
GAGTATATGAGAGACATACGTCAGTCCAACGACCAGGTCCGAATGGGAGA
CTATCAACTCATTGATGTGGAGGGTGTAGGTACTTTAACTATTGTCTTTC
CGAGTGTGAACGGTGAAGTAACCCTGAGACTGGAAGACGTGGCGTATGTT
CCAAGGTTAAAGTACAATCTGCTGTCTCTGATTGTAGCACACCAAAAT
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