mRNA_H-paniculata_contig7351.15324.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig7351.15324.1 vs. uniprot
Match: D7FIQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ3_ECTSI) HSP 1 Score: 327 bits (839), Expect = 4.590e-97 Identity = 174/319 (54.55%), Postives = 223/319 (69.91%), Query Frame = 1
Query: 385 DDLD-ETQWLKPMIAEPTFLDPDVLPLRLENRDGSQTAEVPAATNRYLHGFQKDGVKFMWQRIRAPDKPKGVILADDMGLGKTVQIMALLSALLKKKGTRQDLKDMKARMSKGDHVSTAGRPILIVSPSSVVQSWERHLGIWGHFASASIVSG-----KRSIEVVMDKLSSGRLEVVTVGYDLFTSHKNSIAEYEWLVVVFDEVHMLKNPKSKRSEAVETLKKAEVFIGLTGTLIQNELSEFWWLMNIIEPGCLKTSDEFTEYFKMPILLGGRKGASRSDVIRKSERLVELGIIRDKMVLRRNKEDELGGLLKGKIGTV 1323
DDLD E + LKP I P F DP PL L N G + AEVPA+ NRYL G+Q++GV+FM++R+R D PKGVILADDMGLGKTVQ +ALL ALLKK GTR+D D+K R HVS AG+P+LIV P SV+ +W HL WGHF +A I SG S++ V +L +G LEVV VG +F + +++E++WL VFDE H KNP + ++ AV+ L AEVFIGLTGTL+QN L E+W L+N ++PGC+ D+F +F PIL G ++GASR+DV+ ER+ E+G+ RDK+VLRR K D LG LLKGKIGTV
Sbjct: 238 DDLDDEGEGLKPTIRNPPFEDPGKRPLVLTNEAGGERAEVPASANRYLQGYQREGVEFMYRRVRHTDGPKGVILADDMGLGKTVQTIALLLALLKKTGTRRDRMDIKRRKDCKGHVSVAGKPVLIVCPRSVLPNWTGHLKTWGHFETACITSGGSTAGPESLQRVESRLKAGLLEVVVVGETMFANSIETLSEFDWLTAVFDEFHHYKNPYTNKNRAVQKLVNAEVFIGLTGTLVQNNLDEYWSLLNTVQPGCVGRQDDFKRHFTEPILRGRKRGASRADVLLGRERIDEMGVTRDKVVLRRVK-DILGDLLKGKIGTV 555
BLAST of mRNA_H-paniculata_contig7351.15324.1 vs. uniprot
Match: D7FX84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX84_ECTSI) HSP 1 Score: 207 bits (526), Expect = 8.010e-55 Identity = 121/305 (39.67%), Postives = 187/305 (61.31%), Query Frame = 1
Query: 409 LKPMIAEPTFLDPDVLPLRLENRDGSQTAEVPAATNRYLHGFQKDGVKFMWQRIRAPDKPKGVILADDMGLGKTVQIMALLSALLKKKGTRQDLKDMKARMSKGDHVSTAGRPILIVSPSSVVQSWERHLGIWGHFASASIVSGKRSIEVVMDKLSSGRLEVVTVGYDLFTSHKNSIAEYEWLVVVFDEVHMLKNPKSKRSEAVETLKKAEVFIGLTGTLIQNELSEFWWLMNIIEPGCLKTSDEFTEYFKMPILLGGRKGASRSDVIRKSERLVELGIIRDKMVLRRNKEDELGGLLKGKIGTV 1323
LKP I +P +L +L D + + + NRYL +Q++GV++++ + +A +G IL DDMGLGKTVQ +ALL+++L+K GT +D ++++ R +G S+ G P LIV+P++VV W + + +WGHFA+ + SG R + +M L +GR EVV YDL + + + + + V+FDE H +K+ + S+A L+ VF GLTGTLIQN++ E W+L+++I+P + FTE+F PI A+ SD +RL EL IRDK ++RR K++ELG +LKGK TV
Sbjct: 431 LKPHIEDPPWLG------KLVPFDLGEGGFINPSINRYLRDYQREGVRWLYAKFQAG---QGGILGDDMGLGKTVQSIALLASVLRKSGTGRDSEELRRRRKEGLPASSTGLPWLIVAPAAVVPEWIKQIKVWGHFAAYQLESG-RDADDLMVALKAGRYEVVATSYDLLRACVDRLKKQRFDAVIFDEYHTIKSATTMVSQAACELRTKRVF-GLTGTLIQNDMKELWFLLHLIDPLAVGEQSRFTEHFSEPIKRARAMNATASDRRLGEKRLKELDGIRDKNMIRRTKDEELGDVLKGKSDTV 724
BLAST of mRNA_H-paniculata_contig7351.15324.1 vs. uniprot
Match: K1QRU4_CRAGI (Putative DNA repair and recombination protein RAD26-like protein n=1 Tax=Crassostrea gigas TaxID=29159 RepID=K1QRU4_CRAGI) HSP 1 Score: 170 bits (430), Expect = 3.380e-44 Identity = 97/286 (33.92%), Postives = 163/286 (56.99%), Query Frame = 1
Query: 454 LPLRLENRDGSQTAEVPAATNRYLHGFQKDGVKFMWQRIRAPDKPKGVILADDMGLGKTVQIMALLSALLKKKGTRQDLKDMKAR----MSKGD------HVSTAGRPILIVSPSSVVQSWERHLGIWGHFASASIVSGKRSIEVVMDKLSSGRLEVVTVGYDLFTSHKNSIAEYEWLVVVFDEVHMLKNPKSKRSEAVETLKKAEVFIGLTGTLIQNELSEFWWLMNIIEPGCLKTSDEFTEYFKMPILLGGRKGASRSDVIRKSERLVELGIIRDKMVLRRNKE 1281
+P +L + + EVPA N+YL +Q++G++F++ R + +G +L DDMGLGKTVQ++ LL+ALL KK + D+K K + MS G + RP LI+ P SV+ +W L WG+F S G E + KLS LEVV ++ F + + + +W V+ DEVH +K +++ ++A+ T++ + GLTGT +QN ++E W +++ ++PGCL D FT + +PI G ++ AS+ ++ + + IR+K+++RR K+
Sbjct: 133 VPFKLSSSTDDRQVEVPAPLNQYLRDYQREGIQFLYDHYR---EGEGAVLGDDMGLGKTVQVIGLLAALLGKKCNKTDIKKQKPKFIREMSDGSLEEKIPEDTYKCRPFLIIGPGSVLYNWMDELEAWGYF-SVGKYHGSEKAEC-LSKLSKQSLEVVVTTFETFRENTDELNSVKWEAVIADEVHRIKGLQAQVTQALRTIRTCRRY-GLTGTALQNNMTELWSILDWVQPGCLGNIDTFTAEYVVPIETGQKQDASKRELATARKAKEKFASIRNKIMIRRTKQ 412
BLAST of mRNA_H-paniculata_contig7351.15324.1 vs. uniprot
Match: UPI001CF3E609 (DNA excision repair protein ERCC-6-like 2 isoform X4 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF3E609) HSP 1 Score: 173 bits (438), Expect = 3.000e-43 Identity = 104/294 (35.37%), Postives = 157/294 (53.40%), Query Frame = 1
Query: 421 IAEPTFLDPD---VLPLRLENRDGSQTAEVPAATNRYLHGFQKDGVKFMWQRIRAPDKPKGVILADDMGLGKTVQIMALLSALLKKKGTRQDL----KDMKARMSKGDHVSTAGRPILIVSPSSVVQSWERHLGIWGHFASASIVSGKRSIEVVMDKLSSGRLEVVTVGYDLFTSHKNSIAEYEWLVVVFDEVHMLKNPKSKRSEAVETLKKAEVFIGLTGTLIQNELSEFWWLMNIIEPGCLKTSDEFTEYFKMPILLGGRKGASRSDVIRKSERLVELGIIRDKMVLRRNKE 1281
+ P+F P +P+ L ++PA NRYL +Q+DGV F++Q K G IL DDMGLGKTVQ++A ++A+L K GT+ D+ D K + D + LIVSP SV+ +W+ L WGHF + E + + GRL+V Y+ +H + + + +WL V+ DEVH LK+PKS+ + A + L +A+ GLTGT +QN+L EFW +++ PG L S FT F PI G A++ ++ ++ +L + K LRR K+
Sbjct: 154 MERPSFTQPSQHPTIPMVLSEPGVKPVIQIPATINRYLRDYQRDGVHFLYQHF---SKNTGAILGDDMGLGKTVQVIAFIAAVLGKTGTKADVFYQFMDGKRAGKQRDSICKVSGTFLIVSPGSVMYNWKEELETWGHFKMGLFHGNTK--EDTLQRTLRGRLDVALTTYETMRNHLDDVNKVQWLAVIMDEVHRLKDPKSQITVAAKAL-RAKRRYGLTGTPLQNKLEEFWCVLDWANPGSLGKSKTFTREFDKPIREGQTYDATKRELALSRKKSKDLQDMIRKFFLRRTKD 441
BLAST of mRNA_H-paniculata_contig7351.15324.1 vs. uniprot
Match: UPI001CF3C5C1 (DNA excision repair protein ERCC-6-like 2 n=4 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF3C5C1) HSP 1 Score: 172 bits (437), Expect = 4.460e-43 Identity = 104/294 (35.37%), Postives = 156/294 (53.06%), Query Frame = 1
Query: 421 IAEPTFLDPD---VLPLRLENRDGSQTAEVPAATNRYLHGFQKDGVKFMWQRIRAPDKPKGVILADDMGLGKTVQIMALLSALLKKKGTRQDL----KDMKARMSKGDHVSTAGRPILIVSPSSVVQSWERHLGIWGHFASASIVSGKRSIEVVMDKLSSGRLEVVTVGYDLFTSHKNSIAEYEWLVVVFDEVHMLKNPKSKRSEAVETLKKAEVFIGLTGTLIQNELSEFWWLMNIIEPGCLKTSDEFTEYFKMPILLGGRKGASRSDVIRKSERLVELGIIRDKMVLRRNKE 1281
+ P+F P +P+ L ++PA NRYL +Q+DGV F++Q K G IL DDMGLGKTVQ++A ++A+L K GT+ D+ D K + D + LIVSP SV+ +W+ L WGHF + E + + GRL+V Y+ +H + + +WL V+ DEVH LK+PKS+ + A + L +A+ GLTGT +QN+L EFW +++ PG L S FT F PI G A++ ++ ++ +L + K LRR K+
Sbjct: 197 MERPSFTQPSQHPTIPMVLSEAGVKPVIQIPATINRYLRDYQRDGVHFLYQHF---SKNTGAILGDDMGLGKTVQVIAFIAAVLGKTGTKADVFYQFMDGKRAGKQKDSIYKVSGTFLIVSPGSVMYNWKEELETWGHFKMGLFHGNTK--EDTLQRTLRGRLDVALTTYETMRNHLEDVNKVQWLAVIMDEVHRLKDPKSQITVAAKAL-RAKRRYGLTGTPLQNKLEEFWCVLDWANPGSLGKSKTFTREFDKPIREGQTYDATKRELALSRKKSKDLQDMIRKFFLRRTKD 484
BLAST of mRNA_H-paniculata_contig7351.15324.1 vs. uniprot
Match: UPI001CF17D00 (DNA excision repair protein ERCC-6-like 2 isoform X4 n=1 Tax=Bufo gargarizans TaxID=30331 RepID=UPI001CF17D00) HSP 1 Score: 171 bits (433), Expect = 4.730e-43 Identity = 95/265 (35.85%), Postives = 155/265 (58.49%), Query Frame = 1
Query: 499 VPAATNRYLHGFQKDGVKFMWQRIRAPDKPKGVILADDMGLGKTVQIMALLSALLKKKGTRQDLKD-----MKARMSKGDHVSTAGRPILIVSPSSVVQSWERHLGIWGHFASASIVSGKRSIEVVMDKLSSGRLEVVTVGYDLFTSHKNSIAEYEWLVVVFDEVHMLKNPKSKRSEAVETLKKAEVFIGLTGTLIQNELSEFWWLMNIIEPGCLKTSDEFTEYFKMPILLGGRKGASRSDVIRKSERLVELGIIRDKMVLRRNK 1278
VP NRYL +Q++GV+F+++ D+ G IL DDMGLGKT+Q+++ L+A+L KKGTR+D+++ + RM K S+ R LIVSP SV+ +W L WG+F + I ++ E++ +L G+ E+ Y+ + + EW V+ DEVH +KNPK++ + A++ L + ++ IGLTGT++QN + E W +++ PGCL +F E + PI LG R A++ ++ + + +L + LRR K
Sbjct: 121 VPYTINRYLRDYQREGVQFLYEHY---DRSTGCILGDDMGLGKTIQVISFLAAVLHKKGTREDIENNMPEFLLRRMRKEHITSSTKRVFLIVSPLSVLFNWRDELETWGYFKISVIHGNRKDFELL--RLRQGKSEIALTTYETLRLCLDDLNSVEWSAVIVDEVHKIKNPKARVTGAMKAL-RCKIRIGLTGTILQNNMEELWCVVDWAVPGCLGGKKQFIEEYSHPIELGQRHNATKRELATGRKVMQKLASKMSSLFLRRTK 379
BLAST of mRNA_H-paniculata_contig7351.15324.1 vs. uniprot
Match: B3S281_TRIAD (Uncharacterized protein (Fragment) n=1 Tax=Trichoplax adhaerens TaxID=10228 RepID=B3S281_TRIAD) HSP 1 Score: 168 bits (426), Expect = 1.310e-42 Identity = 99/273 (36.26%), Postives = 155/273 (56.78%), Query Frame = 1
Query: 463 RLENRDGSQTAEVPAATNRYLHGFQKDGVKFMWQRIRAPDKPKGVILADDMGLGKTVQIMALLSALLKKKGTRQDLKDMKARMSKGDHVSTAGRP-ILIVSPSSVVQSWERHLGIWGHFASASIVSGKRSIEVVMDKLSSGRLEVVTVGYDLFTSHKNSIAEYEWLVVVFDEVHMLKNPKSKRSEAVETLKKAEVFIGLTGTLIQNELSEFWWLMNIIEPGCLKTSDEFTEYFKMPILLGGRKGASRSDVIRKSERLVELGIIRDKMVLRRNK 1278
RL + T ++PA NRYL +Q++G++F++ +A +G IL DDMGLGKTVQI+ ++A+L K GT++D+ MK K T R LIVSP SV+ +W L WGHF + + + + +L GRL+VV ++ ++ + + ++WL V+ DE H LK+ KSK + A++ + K IGLTGT +QN LSEFW L++ PGCL T F + ++ PI G + ++ ++ + + EL + + LRR K
Sbjct: 23 RLSGATEATTIQIPANINRYLREYQREGIQFLYNNYKAN---RGSILGDDMGLGKTVQIIGFIAAVLNKSGTKEDV--MKKLWWKSSPSPTNKRQSFLIVSPGSVLYNWIDELNTWGHFKVGRFHASHK--DETLQQLEKGRLDVVLTTFETLRNYLDDLNSFKWLAVIVDEAHRLKDGKSKVTIAMKNI-KCRRRIGLTGTAMQNRLSEFWCLLDWANPGCLGTLGTFQKDYESPIKQGRKFNVTKRELANSNLKSEELTKLHSQWFLRRTK 287
BLAST of mRNA_H-paniculata_contig7351.15324.1 vs. uniprot
Match: UPI001ABDDE75 (DNA excision repair protein ERCC-6-like 2 isoform X1 n=5 Tax=Bufo TaxID=8383 RepID=UPI001ABDDE75) HSP 1 Score: 171 bits (433), Expect = 1.460e-42 Identity = 94/265 (35.47%), Postives = 156/265 (58.87%), Query Frame = 1
Query: 499 VPAATNRYLHGFQKDGVKFMWQRIRAPDKPKGVILADDMGLGKTVQIMALLSALLKKKGTRQDLKD-----MKARMSKGDHVSTAGRPILIVSPSSVVQSWERHLGIWGHFASASIVSGKRSIEVVMDKLSSGRLEVVTVGYDLFTSHKNSIAEYEWLVVVFDEVHMLKNPKSKRSEAVETLKKAEVFIGLTGTLIQNELSEFWWLMNIIEPGCLKTSDEFTEYFKMPILLGGRKGASRSDVIRKSERLVELGIIRDKMVLRRNK 1278
VP NRYL +Q++GV+F+++ + G IL DDMGLGKT+Q+++ L+A+L KKGTR+D+++ + RM + S+ R LIVSP SV+ +W L WG+F + I ++ E+V +L G+ E+ Y+ + + EW V+ DEVH +KNPK++ + A++ L + ++ IGLTGT++QN + E W +++ PGCL +F E + P+ LG R A++ ++ + + +L + + LRRNK
Sbjct: 121 VPYTINRYLRDYQREGVQFLYEHYA---RSTGCILGDDMGLGKTIQVISFLAAVLHKKGTREDIENNMPEFLLRRMRREHITSSTKRVFLIVSPLSVLFNWRDELETWGYFKISVIHGNRKDFELV--RLRQGKSEIALTTYETLRLCLDDLNSVEWSAVIVDEVHKIKNPKARVTGAMKAL-RCKIRIGLTGTILQNNMEELWCVVDWAVPGCLGGKKQFMEEYSHPMELGQRHNATKRELATGRKVMQKLALKMSSLFLRRNK 379
BLAST of mRNA_H-paniculata_contig7351.15324.1 vs. uniprot
Match: UPI0008548653 (DNA excision repair protein ERCC-6-like 2 n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI0008548653) HSP 1 Score: 171 bits (432), Expect = 1.980e-42 Identity = 92/265 (34.72%), Postives = 152/265 (57.36%), Query Frame = 1
Query: 499 VPAATNRYLHGFQKDGVKFMWQRIRAPDKPKGVILADDMGLGKTVQIMALLSALLKKKGTRQDLKD-----MKARMSKGDHVSTAGRPILIVSPSSVVQSWERHLGIWGHFASASIVSGKRSIEVVMDKLSSGRLEVVTVGYDLFTSHKNSIAEYEWLVVVFDEVHMLKNPKSKRSEAVETLKKAEVFIGLTGTLIQNELSEFWWLMNIIEPGCLKTSDEFTEYFKMPILLGGRKGASRSDVIRKSERLVELGIIRDKMVLRRNK 1278
VP NRYL +Q+DG++F+++ + G IL DDMGLGKT+Q+++LL+A+L K GTR+D+++ + M K + R LIVSP SV+ +W L WG+F A I K+ + + +L G+ E+ Y+ + + EW V+ DE H +KNPK++ ++ +++L + +V IGLTGT++QN + E W +M+ PGC + ++F E F P+ LG R A++ ++ + + +L + LRR K
Sbjct: 109 VPFTINRYLRDYQRDGIRFLYEHYM---RSTGCILGDDMGLGKTIQVISLLAAVLHKTGTREDIENNMPEFLLRTMKKKCSTESVKRVFLIVSPLSVLYNWRDELETWGYFKVAIIHGNKKDFQ--LGRLKQGKYEIALTTYETLRLCLDDLNSIEWSAVIVDEAHRIKNPKARVTQTMKSL-RCKVRIGLTGTILQNNMEELWCVMDWAVPGCFGSKNQFKEEFSNPVELGQRHNATKRELATGRKVMQKLAVKMSSSFLRRTK 367
BLAST of mRNA_H-paniculata_contig7351.15324.1 vs. uniprot
Match: A0A6P4ZHA2_BRABE (DNA excision repair protein ERCC-6-like 2 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4ZHA2_BRABE) HSP 1 Score: 164 bits (416), Expect = 2.320e-42 Identity = 94/278 (33.81%), Postives = 149/278 (53.60%), Query Frame = 1
Query: 457 PLRLENRDGSQTAEVPAATNRYLHGFQKDGVKFMWQRIRAPDKPKGVILADDMGLGKTVQIMALLSALLKKKGTRQDLKDMKA-RMSKGDHVSTAGRPILIVSPSSVVQSWERHLGIWGHFASASIVSGKRSIEVVMDKLSSGRLEVVTVGYDLFTSHKNSI--AEYEWLVVVFDEVHMLKNPKSKRSEAVETLKKAEVFIGLTGTLIQNELSEFWWLMNIIEPGCLKTSDEFTEYFKMPILLGGRKGASRSDVIRKSERLVELGIIRDKMVLRRNKE 1281
P L + ++PA NRYL +Q++GV+F++++ A G IL DDMGLGKTVQ+++ LSA+L + GTR+D+ + K R D + LIVSP+SV+ +W L WGHF + V+ + +GRL++V Y+ + N + ++W V+ DE H +K K+K +EA+ L + +GLTGT++QN L E W ++N PGCL +F F PI G + +++ + + L +R K +RR K+
Sbjct: 25 PFVLSPAGETPVVQIPATINRYLRDYQREGVQFLYRQYEAG---MGAILGDDMGLGKTVQVISFLSAVLGRTGTREDITNFKKKRQDSPDDHEEKQQVFLIVSPASVLYNWLDELETWGHFRVGKYHGDPSLRDEVLTRAEAGRLDIVITTYETLRRNLNEVNSVRFDWSAVIVDECHKIKEKKAKITEAMGQL-RVRRRVGLTGTILQNNLMEMWCVLNWANPGCLGDDKDFRAKFVQPIEEGQKMNSTKRQLAEARRKAKMLSNLRKKWFIRRTKK 298 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7351.15324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig7351.15324.1 >prot_H-paniculata_contig7351.15324.1 ID=prot_H-paniculata_contig7351.15324.1|Name=mRNA_H-paniculata_contig7351.15324.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=441bp GGGGGGGNCGDSSAEWPNARWRVCDERKPKRVFDQSGQIKFDSSSDEQADback to top mRNA from alignment at H-paniculata_contig7351:980..8485- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig7351.15324.1 ID=mRNA_H-paniculata_contig7351.15324.1|Name=mRNA_H-paniculata_contig7351.15324.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7506bp|location=Sequence derived from alignment at H-paniculata_contig7351:980..8485- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig7351:980..8485- >mRNA_H-paniculata_contig7351.15324.1 ID=mRNA_H-paniculata_contig7351.15324.1|Name=mRNA_H-paniculata_contig7351.15324.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2646bp|location=Sequence derived from alignment at H-paniculata_contig7351:980..8485- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |