mRNA_H-paniculata_contig73494.15320.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig73494.15320.1
Unique NamemRNA_H-paniculata_contig73494.15320.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig73494.15320.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 3.420e-22
Identity = 42/74 (56.76%), Postives = 54/74 (72.97%), Query Frame = 1
Query:    1 VYLDNTAALHVIANRTHSGRNIHVALRFFFVRELVETGNVAIHYVETTDQLADLGTKYLSTQRFRYLMNRIKNF 222
            VY DNTA LH + NR+ S R  H+ALRFFF+RELV  G ++IHY  T D LA +GTK+ +  RF++LM+RI NF
Sbjct:  137 VYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYAPTEDNLAHIGTKHFNKHRFKHLMDRINNF 210          
BLAST of mRNA_H-paniculata_contig73494.15320.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.280e-21
Identity = 43/74 (58.11%), Postives = 55/74 (74.32%), Query Frame = 1
Query:    1 VYLDNTAALHVIANRTHSGRNIHVALRFFFVRELVETGNVAIHYVETTDQLADLGTKYLSTQRFRYLMNRIKNF 222
            VY DNTA LH + NR+ S R  H+ALRFFF+RELV  G ++IHYV T D LAD+GTK+ +  RF++LM+ I NF
Sbjct:  922 VYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHLMDLINNF 995          
BLAST of mRNA_H-paniculata_contig73494.15320.1 vs. uniprot
Match: A0A6H5J9N2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9N2_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.590e-21
Identity = 42/75 (56.00%), Postives = 56/75 (74.67%), Query Frame = 1
Query:    1 VYLDNTAALHVIANRTHSGRNIHVALRFFFVRELVETGNVAIHYVETTDQLADLGTKYLSTQRFRYLMNRIKNFN 225
            +Y DNTA LH + NR+HS R  H+ALRFFF+R+LV  G + IH+V T    AD+GTK+L+  RF++L+N IKNFN
Sbjct:  280 LYCDNTATLHSLGNRSHSSRTKHIALRFFFIRDLVSEGKIFIHFVPTDSNPADIGTKHLNKDRFQHLLNMIKNFN 354          
BLAST of mRNA_H-paniculata_contig73494.15320.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 2.410e-21
Identity = 43/74 (58.11%), Postives = 55/74 (74.32%), Query Frame = 1
Query:    1 VYLDNTAALHVIANRTHSGRNIHVALRFFFVRELVETGNVAIHYVETTDQLADLGTKYLSTQRFRYLMNRIKNF 222
            VY DNTA LH + NR+ S R  H+ALRFFF+RELV  G ++IHYV T D LAD+GTK+ +  RF++LM+ I NF
Sbjct: 1591 VYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNF 1664          
BLAST of mRNA_H-paniculata_contig73494.15320.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.510e-20
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 1
Query:    1 VYLDNTAALHVIANRTHSGRNIHVALRFFFVRELVETGNVAIHYVETTDQLADLGTKYLSTQRFRYLMNRIKNF 222
            VY DNTA LH + NR+ S R  H+ALRFFF+RELV  G ++IHY  T D LAD+GTK+ +  RF +LM+ I NF
Sbjct:  362 VYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHLMDLINNF 435          
BLAST of mRNA_H-paniculata_contig73494.15320.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.520e-20
Identity = 42/73 (57.53%), Postives = 54/73 (73.97%), Query Frame = 1
Query:    1 VYLDNTAALHVIANRTHSGRNIHVALRFFFVRELVETGNVAIHYVETTDQLADLGTKYLSTQRFRYLMNRIKN 219
            VY DNTA LH + NR+ S R  H+ALRFFF+RELV  G ++IHYV T D LAD+GTK+ +  RF++LM+ I N
Sbjct:  583 VYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINN 655          
BLAST of mRNA_H-paniculata_contig73494.15320.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.850e-19
Identity = 42/75 (56.00%), Postives = 54/75 (72.00%), Query Frame = 1
Query:    1 VYLDNTAALHVIANRTHSGRNIHVALRFFFVRELVETGNVAIHYVETTDQLADLGTKYLSTQRFRYLMNRIKNFN 225
            +Y DNTA LH + NR++S    H+ALRFFF+RELV  G +AIHYV      AD+GTK+L+  RF+ L+N IKNFN
Sbjct:  645 LYGDNTATLHSLGNRSYSSTTKHIALRFFFIRELVSEGRIAIHYVPADSNPADIGTKHLNKDRFQLLLNIIKNFN 719          
BLAST of mRNA_H-paniculata_contig73494.15320.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 3.480e-19
Identity = 40/68 (58.82%), Postives = 55/68 (80.88%), Query Frame = 1
Query:   13 NTAALHVIANRTHSGRNIHVALRFFFVRELVETGNVAIHYVETTDQLADLGTKYLSTQRFRYLMNRIK 216
            NTA LHVI N+T SGR  HVALRFF++RE+V+ G ++IHY+ T D LAD+GTK+L+ QR + L+++IK
Sbjct:  619 NTATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTKHLNKQRHQCLIDKIK 686          
BLAST of mRNA_H-paniculata_contig73494.15320.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 3.090e-18
Identity = 39/75 (52.00%), Postives = 54/75 (72.00%), Query Frame = 1
Query:    1 VYLDNTAALHVIANRTHSGRNIHVALRFFFVRELVETGNVAIHYVETTDQLADLGTKYLSTQRFRYLMNRIKNFN 225
            +Y DNTA LH + NR+ S R  H+ALRFF++RELV  G ++IHYV T   LAD+GTKYL+    ++L++ I +FN
Sbjct: 1120 LYCDNTATLHALGNRSFSSRENHIALRFFYIRELVLEGRISIHYVPTDSNLADIGTKYLNKHWLKHLLDIISSFN 1194          
BLAST of mRNA_H-paniculata_contig73494.15320.1 vs. uniprot
Match: A0A6H5KCX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCX7_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.290e-17
Identity = 38/70 (54.29%), Postives = 52/70 (74.29%), Query Frame = 1
Query:   16 TAALHVIANRTHSGRNIHVALRFFFVRELVETGNVAIHYVETTDQLADLGTK-YLSTQRFRYLMNRIKNF 222
            TA LH + NR+ S R  H+ALRFFF+RELV  G ++IHYV T D LAD+GTK +++  RF++LM+ + NF
Sbjct:  189 TATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFINKHRFKHLMDLVNNF 258          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig73494.15320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMK0_9PHAE3.420e-2256.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNH5_9PHAE1.280e-2158.11Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5J9N2_9PHAE1.590e-2156.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJH6_9PHAE2.410e-2158.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5U2_9PHAE1.510e-2056.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JME8_9PHAE1.520e-2057.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JG39_9PHAE1.850e-1956.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KBU1_9PHAE3.480e-1958.82CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JBV6_9PHAE3.090e-1852.00Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KCX7_9PHAE1.290e-1754.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig73494contigH-paniculata_contig73494:407..637 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.4
Seed ortholog evalue1.1e-07
Seed eggNOG ortholog15368.BRADI3G49960.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930898.1712518-CDS-H-paniculata_contig73494:406..6371622930898.1712518-CDS-H-paniculata_contig73494:406..637Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig73494 407..637 -
1691481501.4716313-CDS-H-paniculata_contig73494:406..6371691481501.4716313-CDS-H-paniculata_contig73494:406..637Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig73494 407..637 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig73494.15320.1prot_H-paniculata_contig73494.15320.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig73494 407..637 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig73494.15320.1

>prot_H-paniculata_contig73494.15320.1 ID=prot_H-paniculata_contig73494.15320.1|Name=mRNA_H-paniculata_contig73494.15320.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
VYLDNTAALHVIANRTHSGRNIHVALRFFFVRELVETGNVAIHYVETTDQ
LADLGTKYLSTQRFRYLMNRIKNFNN*
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mRNA from alignment at H-paniculata_contig73494:407..637-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig73494.15320.1 ID=mRNA_H-paniculata_contig73494.15320.1|Name=mRNA_H-paniculata_contig73494.15320.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at H-paniculata_contig73494:407..637- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCTACCTCGATAATACGGCGGCTCTTCACGTGATTGCCAACCGCACGCA CAGCGGAAGGAACATACACGTGGCACTGCGTTTCTTCTTCGTGAGGGAAT TAGTGGAAACGGGGAACGTTGCCATTCACTACGTGGAGACAACGGATCAA CTTGCTGATCTTGGAACGAAATATCTATCAACACAGAGGTTCCGTTATCT TATGAATCGCATTAAGAATTTCAATAACTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig73494:407..637-

>mRNA_H-paniculata_contig73494.15320.1 ID=mRNA_H-paniculata_contig73494.15320.1|Name=mRNA_H-paniculata_contig73494.15320.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig73494:407..637- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCTACCTCGATAATACGGCGGCTCTTCACGTGATTGCCAACCGCACGCA
CAGCGGAAGGAACATACACGTGGCACTGCGTTTCTTCTTCGTGAGGGAAT
TAGTGGAAACGGGGAACGTTGCCATTCACTACGTGGAGACAACGGATCAA
CTTGCTGATCTTGGAACGAAATATCTATCAACACAGAGGTTCCGTTATCT
TATGAATCGCATTAAGAATTTCAATAACTAAGTCTACCTCGATAATACGG
CGGCTCTTCACGTGATTGCCAACCGCACGCACAGCGGAAGGAACATACAC
GTGGCACTGCGTTTCTTCTTCGTGAGGGAATTAGTGGAAACGGGGAACGT
TGCCATTCACTACGTGGAGACAACGGATCAACTTGCTGATCTTGGAACGA
AATATCTATCAACACAGAGGTTCCGTTATCTTATGAATCGCATTAAGAAT
TTCAATAACTAA
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