mRNA_H-paniculata_contig733.15300.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig733.15300.1
Unique NamemRNA_H-paniculata_contig733.15300.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig733.15300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig733contigH-paniculata_contig733:2353..3269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size917
Cds size510
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig733.15300.1prot_H-paniculata_contig733.15300.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig733 2410..2919 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930895.574334-UTR-H-paniculata_contig733:2352..24091622930895.574334-UTR-H-paniculata_contig733:2352..2409Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig733 2353..2409 +
1691481500.395332-UTR-H-paniculata_contig733:2352..24091691481500.395332-UTR-H-paniculata_contig733:2352..2409Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig733 2353..2409 +
1622930895.6025338-UTR-H-paniculata_contig733:2919..32691622930895.6025338-UTR-H-paniculata_contig733:2919..3269Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig733 2920..3269 +
1691481500.4194345-UTR-H-paniculata_contig733:2919..32691691481500.4194345-UTR-H-paniculata_contig733:2919..3269Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig733 2920..3269 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930895.5877502-CDS-H-paniculata_contig733:2409..29191622930895.5877502-CDS-H-paniculata_contig733:2409..2919Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig733 2410..2919 +
1691481500.4107108-CDS-H-paniculata_contig733:2409..29191691481500.4107108-CDS-H-paniculata_contig733:2409..2919Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig733 2410..2919 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig733.15300.1

>prot_H-paniculata_contig733.15300.1 ID=prot_H-paniculata_contig733.15300.1|Name=mRNA_H-paniculata_contig733.15300.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=170bp
MIPLLTCSYLVASFVCLRSVCFVLYLSLMQYIIQRVNCVMLLHIMSHVAD
GLLACVFSVARSVSSQSGSISQGCVLMGAGSRSNRSPPFVGVLGHMISLG
MCSCSIAACTVTQHIYSSVAVITQHTTLHSIVVPVRDLGVDQVYLFLSFV
LHCGGGKLMILSPFFACWI*
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mRNA from alignment at H-paniculata_contig733:2353..3269+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig733.15300.1 ID=mRNA_H-paniculata_contig733.15300.1|Name=mRNA_H-paniculata_contig733.15300.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=917bp|location=Sequence derived from alignment at H-paniculata_contig733:2353..3269+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGTGATATTAGAGGGACTGGAGCGCATGGGAGACGTACTGCTGTTGACC
AGGAGGTATGATACCTCTCCTGACGTGTAGCTATCTAGTCGCGAGTTTTG
TGTGTTTGCGGAGTGTGTGCTTTGTGTTGTATTTGAGCTTGATGCAGTAC
ATCATACAGAGAGTGAACTGCGTTATGCTTCTTCATATAATGTCTCATGT
GGCTGATGGTCTGCTTGCGTGCGTGTTTTCTGTCGCCAGGAGTGTCAGTT
CGCAGTCTGGCAGCATTTCACAGGGCTGTGTGTTAATGGGCGCAGGTAGC
CGTAGCAACCGCTCGCCTCCCTTCGTTGGTGTACTAGGGCATATGATCTC
GCTGGGGATGTGTTCCTGTTCCATAGCAGCATGTACAGTGACACAGCACA
TTTACTCATCAGTCGCTGTGATAACGCAGCACACTACACTACACAGTATA
GTTGTACCTGTTCGTGACCTCGGAGTTGACCAGGTGTACCTTTTCTTGTC
GTTTGTCCTTCATTGTGGGGGAGGGAAACTCATGATTTTGTCGCCCTTTT
TTGCCTGCTGGATTTGACAGTAGTGTCGTCGTCGCCGAGAACTAAAGACG
CTGTTAATACCAGCTCTTTCAGGTGGATGCGGTATTTCTGCTCCACCTCC
AGTGGTGTTCGAGTTATGGATTCTGCAAGTTGACGGAAATGTTTGCCATA
GCGTTCTCTGTAATCTGGGCTTGAAGTAAATCGAAGCCATGTCTCATTGC
GTCGTCATGTCGTAGGCAGGGTGTTTTCTTGGGCACATCCCACCACGTGC
ACTGATTTCCGCCACTTTCCTAGCCAAAGGATCCTGCCTTCTTATCCTGT
CGTAAGAATTCTGTCGTAAGAATCATTCGTGTTGTCTCCGTGTTGGAGTA
CATGCCTACAAGACCAA
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Coding sequence (CDS) from alignment at H-paniculata_contig733:2353..3269+

>mRNA_H-paniculata_contig733.15300.1 ID=mRNA_H-paniculata_contig733.15300.1|Name=mRNA_H-paniculata_contig733.15300.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1020bp|location=Sequence derived from alignment at H-paniculata_contig733:2353..3269+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATACCTCTCCTGACGTGTAGCTATCTAGTCGCGAGTTTTGTGTGTTT
GCGGAGTGTGTGCTTTGTGTTGTATTTGAGCTTGATGCAGTACATCATAC
AGAGAGTGAACTGCGTTATGCTTCTTCATATAATGTCTCATGTGGCTGAT
GGTCTGCTTGCGTGCGTGTTTTCTGTCGCCAGGAGTGTCAGTTCGCAGTC
TGGCAGCATTTCACAGGGCTGTGTGTTAATGGGCGCAGGTAGCCGTAGCA
ACCGCTCGCCTCCCTTCGTTGGTGTACTAGGGCATATGATCTCGCTGGGG
ATGTGTTCCTGTTCCATAGCAGCATGTACAGTGACACAGCACATTTACTC
ATCAGTCGCTGTGATAACGCAGCACACTACACTACACAGTATAGTTGTAC
CTGTTCGTGACCTCGGAGTTGACCAGGTGTACCTTTTCTTGTCGTTTGTC
CTTCATTGTGGGGGAGGGAAACTCATGATTTTGTCGCCCTTTTTTGCCTG
CTGGATTTGAATGATACCTCTCCTGACGTGTAGCTATCTAGTCGCGAGTT
TTGTGTGTTTGCGGAGTGTGTGCTTTGTGTTGTATTTGAGCTTGATGCAG
TACATCATACAGAGAGTGAACTGCGTTATGCTTCTTCATATAATGTCTCA
TGTGGCTGATGGTCTGCTTGCGTGCGTGTTTTCTGTCGCCAGGAGTGTCA
GTTCGCAGTCTGGCAGCATTTCACAGGGCTGTGTGTTAATGGGCGCAGGT
AGCCGTAGCAACCGCTCGCCTCCCTTCGTTGGTGTACTAGGGCATATGAT
CTCGCTGGGGATGTGTTCCTGTTCCATAGCAGCATGTACAGTGACACAGC
ACATTTACTCATCAGTCGCTGTGATAACGCAGCACACTACACTACACAGT
ATAGTTGTACCTGTTCGTGACCTCGGAGTTGACCAGGTGTACCTTTTCTT
GTCGTTTGTCCTTCATTGTGGGGGAGGGAAACTCATGATTTTGTCGCCCT
TTTTTGCCTGCTGGATTTGA
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