mRNA_H-paniculata_contig733.15299.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig733.15299.1
Unique NamemRNA_H-paniculata_contig733.15299.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig733.15299.1 vs. uniprot
Match: A0A6H5KLW2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLW2_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.490e-17
Identity = 44/95 (46.32%), Postives = 62/95 (65.26%), Query Frame = 2 
Query:  311 MGFFEDISARHERLKHRIHNFKIPLSRRGQLAMNVVYFTVPIVVGTYWIENLSGTAERNLKQAGVLPQPYGTDEEDPGEFSSAPHGKELEKLIEK 595
            MG  +D SA H+RLK RIHNF+IPLSR G++AM++VYF++P+V G Y ++     A+ NL  AGVLP+P  T         +A   K+LE++  K
Sbjct:    1 MGIMDDFSAGHQRLKERIHNFRIPLSRPGRIAMSIVYFSIPVVGGHYLMQWAQERAQVNLTDAGVLPKPGETPTRSKTHEQNAAIKKQLEEIRSK 95
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BLAST of mRNA_H-paniculata_contig733.15299.1 vs. uniprot
Match: A0A835YNY3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNY3_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 3.270e-11
Identity = 34/61 (55.74%), Postives = 42/61 (68.85%), Query Frame = 2 
Query:  326 DISARHERLKHRIHNFKIPLSRRGQLAMNVVYFTVPIVVGTYWIENLSGTAERNLKQAGVL 508
            D+  RHE LK RIHNF+IPLS RGQLAM VVYFTVP V G   ++     A++NL+   V+
Sbjct:    2 DLRGRHEALKKRIHNFRIPLSPRGQLAMQVVYFTVPFVGGMAIMQWARSKADKNLEHLQVV 62
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BLAST of mRNA_H-paniculata_contig733.15299.1 vs. uniprot
Match: A0A2D4BV99_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BV99_PYTIN)

HSP 1 Score: 67.8 bits (164), Expect = 1.610e-10
Identity = 30/61 (49.18%), Postives = 42/61 (68.85%), Query Frame = 2 
Query:  308 IMGFFEDISARHERLKHRIHNFKIPLSRRGQLAMNVVYFTVPIVVGTYWIENLSGTAERNL 490
            ++ F  DI A HERLK R+H F+IPLS+ GQ AM VVYF++P++ G + ++     AERN 
Sbjct:    1 MLSFLRDIGAAHERLKKRVHAFRIPLSKNGQRAMGVVYFSIPVIGGYFVMKWAERRAERNF 61
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BLAST of mRNA_H-paniculata_contig733.15299.1 vs. uniprot
Match: A0A7R9U3Q2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3Q2_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 5.840e-10
Identity = 36/79 (45.57%), Postives = 49/79 (62.03%), Query Frame = 2 
Query:  311 MGFFEDISARHER---LKHRIHNFKIPLSRRGQLAMNVVYFTVPIVVGTYWIENLSGTAERNLKQAGVLPQPYGTDEED 538
            MGFFE +   HER   LKHRIHNF++PLS  GQ  M  VYF +P++ G Y ++     AE+NL + G   + +  +EED
Sbjct:    1 MGFFELLRQLHERQENLKHRIHNFRMPLSPAGQRFMGFVYFCIPVIGGYYIMQWAQRQAEKNLGKHGEKLRKHLAEEED 79
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BLAST of mRNA_H-paniculata_contig733.15299.1 vs. uniprot
Match: A0A485LRW2_9STRA (Aste57867_24971 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LRW2_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 6.100e-10
Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 2 
Query:  311 MGFFEDISARHERLKHRIHNFKIPLSRRGQLAMNVVYFTVPIVVGTYWIENLSGTAERNLK 493
            MG F D    HERLK RIH+ +IPL  +G+  M VVYFT PI++G+Y ++  +  A+ NLK
Sbjct:    1 MGVFRDFVDAHERLKKRIHSTRIPLGPKGKAVMTVVYFTTPIIIGSYIMQWATSKADDNLK 61
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BLAST of mRNA_H-paniculata_contig733.15299.1 vs. uniprot
Match: A0A8K1CHE5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHE5_PYTOL)

HSP 1 Score: 65.9 bits (159), Expect = 7.720e-10
Identity = 28/62 (45.16%), Postives = 44/62 (70.97%), Query Frame = 2 
Query:  308 IMGFFEDISARHERLKHRIHNFKIPLSRRGQLAMNVVYFTVPIVVGTYWIENLSGTAERNLK 493
            ++ +   + A HERLK RIH+F+IPLS+ GQ AM+VVYF+VP++ G + ++     A+RN +
Sbjct:    2 VLAYLRQLGAAHERLKKRIHSFRIPLSKNGQRAMSVVYFSVPVIGGYFVMKWAERRADRNFQ 63
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BLAST of mRNA_H-paniculata_contig733.15299.1 vs. uniprot
Match: A0A7S3YRV2_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YRV2_9EUKA)

HSP 1 Score: 52.0 bits (123), Expect = 6.610e-5
Identity = 23/60 (38.33%), Postives = 37/60 (61.67%), Query Frame = 2 
Query:  317 FFEDISARHERLKHRIHNFKIPLSRRGQLAMNVVYFTVPIVVGTYWIENLSGTAERNLKQ 496
            F + IS RH+ LKH+IHN +IPL  R + A+   Y   P+ VG + ++  +  AE+N ++
Sbjct:   15 FLKTISERHQALKHKIHNTRIPLGPRARTAVTCFYIISPVFVGYHVMQYTNQYAEKNARK 74
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig733.15299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KLW2_9PHAE1.490e-1746.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YNY3_9STRA3.270e-1155.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2D4BV99_PYTIN1.610e-1049.18Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A7R9U3Q2_9STRA5.840e-1045.57Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A485LRW2_9STRA6.100e-1049.18Aste57867_24971 protein n=1 Tax=Aphanomyces stella... [more]
A0A8K1CHE5_PYTOL7.720e-1045.16Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S3YRV2_9EUKA6.610e-538.33Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig733contigH-paniculata_contig733:1707..5178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.5
Seed ortholog evalue4.9e-16
Seed eggNOG ortholog2880.D8LBP5
Hectar predicted targeting categoryother localisation
EggNOG OGs2E32P@1,2SA7S@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_003210.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1260
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig733.15299.1prot_H-paniculata_contig733.15299.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig733 2017..2325 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930895.6493752-UTR-H-paniculata_contig733:1706..20161622930895.6493752-UTR-H-paniculata_contig733:1706..2016Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig733 1707..2016 +
1691481500.4281898-UTR-H-paniculata_contig733:1706..20161691481500.4281898-UTR-H-paniculata_contig733:1706..2016Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig733 1707..2016 +
1622930895.692482-UTR-H-paniculata_contig733:2325..24071622930895.692482-UTR-H-paniculata_contig733:2325..2407Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig733 2326..2407 +
1691481500.4550266-UTR-H-paniculata_contig733:2325..24071691481500.4550266-UTR-H-paniculata_contig733:2325..2407Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig733 2326..2407 +
1622930895.712281-UTR-H-paniculata_contig733:4619..51781622930895.712281-UTR-H-paniculata_contig733:4619..5178Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig733 4620..5178 +
1691481500.468558-UTR-H-paniculata_contig733:4619..51781691481500.468558-UTR-H-paniculata_contig733:4619..5178Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig733 4620..5178 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930895.6733332-CDS-H-paniculata_contig733:2016..23251622930895.6733332-CDS-H-paniculata_contig733:2016..2325Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig733 2017..2325 +
1691481500.4379728-CDS-H-paniculata_contig733:2016..23251691481500.4379728-CDS-H-paniculata_contig733:2016..2325Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig733 2017..2325 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig733.15299.1

>prot_H-paniculata_contig733.15299.1 ID=prot_H-paniculata_contig733.15299.1|Name=mRNA_H-paniculata_contig733.15299.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
MGFFEDISARHERLKHRIHNFKIPLSRRGQLAMNVVYFTVPIVVGTYWIE
NLSGTAERNLKQAGVLPQPYGTDEEDPGEFSSAPHGKELEKLIEKSIGNG
RK*
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mRNA from alignment at H-paniculata_contig733:1707..5178+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig733.15299.1 ID=mRNA_H-paniculata_contig733.15299.1|Name=mRNA_H-paniculata_contig733.15299.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3472bp|location=Sequence derived from alignment at H-paniculata_contig733:1707..5178+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATTTTTTACAAACACACACTCTACCGTCACGATGTTGACTTGTAGTTGC
CAGCGCAGCACAACCTGGAGCCAATTGTTGTGAAGGTTACCTGCAGAGAG
CCTTTGTACTCGCAGAGACTTCCACTGGTCCCCTTCTTGCTCCTGGTAAT
AGCAGAAGAGCTCCATCGAGATTGGCACCCTCTGAACAATAAGACAAGTC
TATTTAGTGAGCCAGAGGTAACAAGGCAGCAACTGCCACGGTACTCTTAC
TCTGGTATTGCACCCCATTCCATCGTCGACACGAGCAGGGTAACCTTGGG
ATAGGATATAATGGGATTTTTCGAAGACATCAGTGCGAGGCATGAACGCC
TCAAGCACCGAATACACAACTTCAAGATACCGCTCTCACGGAGAGGCCAA
TTAGCAATGAACGTGGTGTACTTTACCGTCCCAATAGTGGTTGGCACCTA
CTGGATCGAGAATCTTAGTGGGACGGCGGAAAGGAACCTGAAGCAGGCAG
GAGTGCTACCGCAACCTTACGGAACGGATGAAGAGGACCCCGGAGAGTTT
TCGTCAGCGCCGCATGGCAAGGAGTTGGAGAAACTGATAGAGAAGTCTAT
CGGGAATGGGAGGAAATAAGTGGACGGTGGGGAGGGGAGGGGGGGGGGGT
GATATTAGAGGGACTGGAGCGCATGGGAGACGTACTGCTGTTGACCAGGA
GGTATGATACCTCTCCTGACGTGTAGCTATCTAGTCGCGAGTTTTGTGTG
TTTGCGGAGTGTGTGCTTTGTGTTGTATTTGAGCTTGATGCAGTACATCA
TACAGAGAGTGAACTGCGTTATGCTTCTTCATATAATGTCTCATGTGGCT
GATGGTCTGCTTGCGTGCGTGTTTTCTGTCGCCAGGAGTGTCAGTTCGCA
GTCTGGCAGCATTTCACAGGGCTGTGTGTTAATGGGCGCAGGTAGCCGTA
GCAACCGCTCGCCTCCCTTCGTTGGTGTACTAGGGCATATGATCTCGCTG
GGGATGTGTTCCTGTTCCATAGCAGCATGTACAGTGACACAGCACATTTA
CTCATCAGTCGCTGTGATAACGCAGCACACTACACTACACAGTATAGTTG
TACCTGTTCGTGACCTCGGAGTTGACCAGGTGTACCTTTTCTTGTCGTTT
GTCCTTCATTGTGGGGGAGGGAAACTCATGATTTTGTCGCCCTTTTTTGC
CTGCTGGATTTGACAGTAGTGTCGTCGTCGCCGAGAACTAAAGACGCTGT
TAATACCAGCTCTTTCAGGTGGATGCGGTATTTCTGCTCCACCTCCAGTG
GTGTTCGAGTTATGGATTCTGCAAGTTGACGGAAATGTTTGCCATAGCGT
TCTCTGTAATCTGGGCTTGAAGTAAATCGAAGCCATGTCTCATTGCGTCG
TCATGTCGTAGGCAGGGTGTTTTCTTGGGCACATCCCACCACGTGCACTG
ATTTCCGCCACTTTCCTAGCCAAAGGATCCTGCCTTCTTATCCTGTCGTA
AGAATTCTGTCGTAAGAATCATTCGTGTTGTCTCCGTGTTGGAGTACATG
CCTACAAGACCAACATATGCGCACATACCACACGATCTTGTTGGGGCTCA
GTATCCACTTGAAAGACAGCAGCAGTACCGTTGCTGCGAGATGCTGGAGT
TCGTAGAGAGTTCATTCTGTATATATATATATAGAGAGATAATCCCCTTT
TCAGACCCAGTTGTTGTGTGCTCGTGACGTCGGCTATGAAGTGCTCACTG
GCGGCCGCTACCATCGCACAACATGTCAGGTCGTTGAACAGCCCAATTTT
ATGTTCCTAGCTCCGTCTATTTATCGGAAGATAGTCTTTAGAGGCACCTC
CGTGCTACTTTTGAAATGATTTTTGGCAATGTCTGTATAAGAGTAGTGTA
GTCGACCCGAGCTGCAGTAAACGCTATTTATATGCAGTCTAGACAGAGAA
GGTCCGGGTGTGTATGTTGTACATGAAGAGAAGCGTTACCATAGCCTACT
TTCTATCCTCGGGAGCAGTCTGTTCGTCTCTTCCTGTTGCACTTCAACAT
GCCCTTCATCTATCCGAACCTCCTAAATATGACGAGTCCCCACTTTCGCT
GTGTTGTCTCCCAGGATAGTGATTTGACTGGTATGTGAAGATCCCAAGTG
GACGCATCTGTAGAAGATGCTGCATATGAGTAGCATAGGTGCAAGGAGGT
CACATAAAATTCAGATTGTTCCTCGTGGCTTATTTCAAACGTATCAAACA
TTAATAAACCCCTTTTGAGGGCAAGGGCAAGCGAAGCGAAGAGCTGAGCG
CCCAGAACGGGCAGCAGGATGACGAGATGGCCTTCCCGCTGCTTCGGAAT
AGTCTTGTTTTTGGCGATATGGATTGCTCCTAGTTCATGCCTTCGATTTT
CTCCTGTGATGAACTGTCAAACCATTTCTCCAACACACTCTGGAGGTCAT
GAGCCCAGAAGGGATCACACTCCAAATATGCAAAGACATTTTATTGAGTA
GCATTTTCTTCCACGTTTAGGCTAACGGACCGGGACTACATTTTTTCGTT
GATCAGTGGTCGAGGGGCACATGGTTGCAAAGCCTGAGTGTACGCATCTT
TTGTGCGCCTACTCTGCTCTTCTGTGCCATCTTCCCGCACCGGTGCTCTA
CTTCCTCTGTGCCATAAGAAAATTCGATTGAGTTTATAGAAGCAGGTGAC
CACCGCTGAATTTCAAACTTTGTAGTCCAATATGTTTTTGGGGTTAATTG
CCGAAAATCATGGAAATTGGCACAATCCATCGGGAGTGCGCGCGGCGCAA
AAAAAAACGTGGGCCAAGAAACGGCCATTTTTCCCCTTCAAAAAGAAGAA
AAACGTCGAAAAAACGCCCTTTCTGATGTGTTCCCCCTTGTTGTCACTGT
GACTCTTTGCTAGGTAAGCCCAAGCCTTGTCGAAGGCCTCCCGGTCGTTG
TCTACCGCCACCTCCAGTGTCCCCGGCCCTCTGGCGCGTCGCCACCTCCG
TGTGCTTTACGTTGAAGTCGGTGTTGCTCAGTGCGCGGAGTGTTTTGGTT
GAATCATCCACCAAGCCTTCATATACTGGGAACAATGCGCGAACTAGTTT
GATCGACGGGGGTTTTGTATTTCCCCACATCGGCTGCAAAGCCCGTTCCT
TCAGAGGGAGGTTTTCGTTGGCATAGTCGCTTGGCTAAGAGCGGGCGCGT
TTTCTCTTGGTTTTATTCTCTGTTGACGTCTTCTGAGCCTCTCCCAACAC
TGGGCCCTCCGTCTTTTAGCTCCCCCGGGTACCCAATTTTTTGTTTGCAA
CTTGAACGCGAACCTTTCGGTATCAGTTTTGATGCCCGCGATGTGTATCC
GTCTTGAGCACGTACTCTATCAGAACTTGCTTGTGTGTTTATGTCCCTTC
TATGTTGGAATGTGCTACATGCGTGTTTGCCTTAGTTGCGAGAGACCAAG
AACACACTTTCGCGTGCTTGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig733:1707..5178+

>mRNA_H-paniculata_contig733.15299.1 ID=mRNA_H-paniculata_contig733.15299.1|Name=mRNA_H-paniculata_contig733.15299.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig733:1707..5178+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGATTTTTCGAAGACATCAGTGCGAGGCATGAACGCCTCAAGCACCG
AATACACAACTTCAAGATACCGCTCTCACGGAGAGGCCAATTAGCAATGA
ACGTGGTGTACTTTACCGTCCCAATAGTGGTTGGCACCTACTGGATCGAG
AATCTTAGTGGGACGGCGGAAAGGAACCTGAAGCAGGCAGGAGTGCTACC
GCAACCTTACGGAACGGATGAAGAGGACCCCGGAGAGTTTTCGTCAGCGC
CGCATGGCAAGGAGTTGGAGAAACTGATAGAGAAGTCTATCGGGAATGGG
AGGAAATAAATGGGATTTTTCGAAGACATCAGTGCGAGGCATGAACGCCT
CAAGCACCGAATACACAACTTCAAGATACCGCTCTCACGGAGAGGCCAAT
TAGCAATGAACGTGGTGTACTTTACCGTCCCAATAGTGGTTGGCACCTAC
TGGATCGAGAATCTTAGTGGGACGGCGGAAAGGAACCTGAAGCAGGCAGG
AGTGCTACCGCAACCTTACGGAACGGATGAAGAGGACCCCGGAGAGTTTT
CGTCAGCGCCGCATGGCAAGGAGTTGGAGAAACTGATAGAGAAGTCTATC
GGGAATGGGAGGAAATAA
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