mRNA_H-paniculata_contig7311.15283.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7311.15283.1
Unique NamemRNA_H-paniculata_contig7311.15283.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig7311.15283.1 vs. uniprot
Match: D8LCZ7_ECTSI (ARLX, novel ARF-like Ras superfamily GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCZ7_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 1.620e-56
Identity = 103/181 (56.91%), Postives = 126/181 (69.61%), Query Frame = 1
Query:    1 IGNSMEKGEVQVLIEGCPASGKSSALFRLKNGEMLLTPEPGTDGFFVENVSQAGGAKLNVWEVHSKG--VREKCLSTARALCFVVDCTEGSAGIHRAKAKLHETMLSFSSQPKRKCFTVLVLANKQDVARALTPSKLELTLSLGNRADSKTWSWKVQGCSATQGSGLKEGMDWIAAVVRKK 537
            +GNSM K EVQV++EG   SGKSSALF LK+GE LLTP PG +GF+VE    AG  +LNVWEV      VREK L+ ARAL +V+D T GSAGI  AK  L+  + + +SQ  R CFTVLVLANKQD+  A +P+ +E  L++ +R D  TW W VQ CSA +G GLKEGMDW+A  VR K
Sbjct:    1 MGNSMRK-EVQVILEGRSGSGKSSALFHLKHGETLLTPTPGIEGFYVERAVHAG-TRLNVWEVQPSSTIVREKSLTVARALVYVIDSTGGSAGIQDAKEDLYPILTALASQKPRTCFTVLVLANKQDIPAAASPATIERDLAISSRPDGSTWRWAVQSCSAKEGLGLKEGMDWLAKAVRGK 179          
BLAST of mRNA_H-paniculata_contig7311.15283.1 vs. uniprot
Match: A0A0H5C9A6_CYBJN (ADP-ribosylation factor 1 n=4 Tax=Saccharomycetales TaxID=4892 RepID=A0A0H5C9A6_CYBJN)

HSP 1 Score: 90.1 bits (222), Expect = 1.940e-17
Identity = 66/173 (38.15%), Postives = 101/173 (58.38%), Query Frame = 1
Query:   25 EVQVLIEGCPASGKSSALFRLKNGEMLLTPEPGTDGFFVENVSQAGGAKLNVWEVHSK-GVRE--KCL-STARALCFVVDCTEGSAGIHRAKAKLHETMLSFSSQPKRKCFTVLVLANKQDVARALTPSKLELTLSLGNRADSKTWSWKVQGCSATQGSGLKEGMDWIAAVVR 531
            E+++LI G   +GK++ L+RL+ GE++ T    T GF VE +S     KLNVW++  +  +R   +C  +   A+ FVVD T+    I  A  +LH TML+   + +     +LV ANKQDVA ALT +++   L+L   +D K  SW +   SA +G GL EG+DW+  V++
Sbjct:   18 EIRILILGLDGAGKTTILYRLQIGEVINTKP--TIGFNVETLSYKN-LKLNVWDLGGQTSIRPYWRCYYANTAAVIFVVDSTDKDR-IDTASKELH-TMLA---EEELSDAALLVFANKQDVAGALTAAEVSKALNL---SDLKDRSWSIVASSAIKGEGLTEGLDWLIDVIK 179          
BLAST of mRNA_H-paniculata_contig7311.15283.1 vs. uniprot
Match: G2QEQ9_MYCTT (Uncharacterized protein n=5 Tax=Chaetomiaceae TaxID=35718 RepID=G2QEQ9_MYCTT)

HSP 1 Score: 88.2 bits (217), Expect = 8.720e-17
Identity = 62/174 (35.63%), Postives = 96/174 (55.17%), Query Frame = 1
Query:   19 KGEVQVLIEGCPASGKSSALFRLKNGEMLLTPEPGTDGFFVENVSQAGGAKLNVWEVHSK-GVRE--KCL-STARALCFVVDCTEGSAGIHRAKAKLHETMLSFSSQPKRKCFTVLVLANKQDVARALTPSKLELTLSLGNRADSKTWSWKVQGCSATQGSGLKEGMDWIAAVV 528
            K E+++LI G   +GK++ L+RLK GE++ T    T GF VE+V+  G    NVW++  +  +R   +C  +   A+ FVVD T+    I R +    E + +  ++ + K   +LV ANKQD   A   + +   L LG   D    +W +  CSA +GSG+KEGMDW++  V
Sbjct:   15 KKEIRILILGLDNAGKTTLLYRLKIGEVVTTIP--TIGFNVESVTY-GKLNFNVWDLGGQTSIRPYWRCYYANTAAVIFVVDSTD----IERLQTAADE-LAAMLNEDELKDAALLVFANKQDQPGAKGAADISQALRLGELRDR---NWSIMACSAVEGSGIKEGMDWLSQTV 177          
BLAST of mRNA_H-paniculata_contig7311.15283.1 vs. uniprot
Match: B4NHQ2_DROWI (Uncharacterized protein n=11 Tax=Drosophila TaxID=7215 RepID=B4NHQ2_DROWI)

HSP 1 Score: 85.5 bits (210), Expect = 7.670e-16
Identity = 59/174 (33.91%), Postives = 100/174 (57.47%), Query Frame = 1
Query:   25 EVQVLIEGCPASGKSSALFRLKNGEMLLTPEPGTDGFFVENVSQAGGAKLNVWEVHSKG-VR---EKCLSTARALCFVVDCTEGSAGIHRAKAKLHETMLSFSSQPKRKCFTVLVLANKQDVARALTPSKLELTLSLGNRADSKTWSWKVQGCSATQGSGLKEGMDWIAAVVRK 534
            E ++L+ G   +GK++ L +L + E + T  P T GF +++VS A G KLNVW++  +  +R   +   +    L +V+DCT+ +  +  A ++L E ++      + K   +LV ANKQD+  A+T S++   L L    D    +W+++ C+A  GSGLKEGMDW+   ++K
Sbjct:   17 EARILLLGLDNAGKTTILKQLAS-EDITTVTP-TAGFNIKSVS-ADGFKLNVWDIGGQWKIRPYWKNYFANTDVLIYVIDCTDRTR-LTEAGSELFEMLMD----NRLKQIPLLVFANKQDLPSAMTASEVAEALGLVRLEDR---TWEIKACTAVDGSGLKEGMDWVCKNMKK 179          
BLAST of mRNA_H-paniculata_contig7311.15283.1 vs. uniprot
Match: A0A7R8V192_HERIL (Hypothetical protein n=1 Tax=Hermetia illucens TaxID=343691 RepID=A0A7R8V192_HERIL)

HSP 1 Score: 85.5 bits (210), Expect = 7.850e-16
Identity = 55/175 (31.43%), Postives = 99/175 (56.57%), Query Frame = 1
Query:   25 EVQVLIEGCPASGKSSALFRLKNGEML-LTPEPGTDGFFVENVSQAGGAKLNVWEVHSKG-VR---EKCLSTARALCFVVDCTEGSAGIHRAKAKLHETMLSFSSQPKRKCFTVLVLANKQDVARALTPSKLELTLSLGNRADSKTWSWKVQGCSATQGSGLKEGMDWIAAVVRK 534
            E ++L+ G   +GK++ L +L + E+  +TP   T GF +++V+ A G KLNVW++  +  +R   +        L +V+DCT+     H   ++    ++      + K   +LV ANKQDVA A++ S++   + L N  + +TW  ++Q C+A  G+G+KEGMDW+   +++
Sbjct:   17 EARILLLGLDNAGKTTLLKQLASEEVTQVTP---TAGFNIKSVA-AEGVKLNVWDIGGQSKIRPYWKNYFDNTDVLIYVIDCTD-----HTRLSETGNELMEILEDERLKGVPLLVFANKQDVASAMSASQVAENIGLIN-LEGRTW--QIQACTAINGTGVKEGMDWVCQNIKR 179          
BLAST of mRNA_H-paniculata_contig7311.15283.1 vs. uniprot
Match: A0A182KGH4_9DIPT (Uncharacterized protein n=3 Tax=Pyretophorus TaxID=44537 RepID=A0A182KGH4_9DIPT)

HSP 1 Score: 85.1 bits (209), Expect = 1.200e-15
Identity = 61/183 (33.33%), Postives = 99/183 (54.10%), Query Frame = 1
Query:   10 SMEKGEVQVLIEGCPASGKSSALFRLKNGEML-LTPEPGTDGFFVENVSQAGGAKLNVWEVHSKG-VR---EKCLSTARALCFVVDCTEGSAGIHRAKAKLHET---MLSFSSQPKRKCFTVLVLANKQDVARALTPSKLELTLSLGNRADSKTWSWKVQGCSATQGSGLKEGMDWIAAVVRK 534
            S  + E+++L+ G   +GK++ L +L + E+  +TP   T GF +++V  + G KLNVW++  +  +R   +        L +V+D ++        K +L ET   +       K K   +LV ANKQDV  AL  S++   L L    D    +W++QGCSA QG+G+KEGMDW+   ++K
Sbjct:   18 SAPEKELRILLLGLDNAGKTTLLKQLASEEVTQVTP---TAGFNIKSVV-SDGFKLNVWDIGGQSKIRPYWKNYFENTDVLIYVIDSSD--------KKRLEETGDELTELLLDDKLKAVPLLVFANKQDVVGALKASEIAECLKLVKLMDR---TWQIQGCSALQGTGVKEGMDWVCKSIKK 185          
BLAST of mRNA_H-paniculata_contig7311.15283.1 vs. uniprot
Match: A0A1I8M7K6_MUSDO (Uncharacterized protein n=6 Tax=Calyptratae TaxID=43742 RepID=A0A1I8M7K6_MUSDO)

HSP 1 Score: 84.7 bits (208), Expect = 1.430e-15
Identity = 58/178 (32.58%), Postives = 101/178 (56.74%), Query Frame = 1
Query:   25 EVQVLIEGCPASGKSSALFRLKNGEML-LTPEPGTDGFFVENVSQAGGAKLNVWEVHSKG-VR---EKCLSTARALCFVVDCTEGSAGIHRAKAKLHET---MLSFSSQPKRKCFTVLVLANKQDVARALTPSKLELTLSLGNRADSKTWSWKVQGCSATQGSGLKEGMDWIAAVVRK 534
            E ++L+ G   +GK++ L +L N E+  +TP   T GF +++VS A G KLNVW++  +  +R   +   +    L +V+DCT+        + +L ET   +       + K   +L+ ANKQD+  A+T S++   + L  R + +TW  +++ CSA +G+G+KEGMDW+   ++K
Sbjct:   17 EARILLLGLDNAGKTTILKQLANEEITTVTP---TAGFNIKSVS-ADGFKLNVWDIGGQWKIRPYWKNYFANTDVLIYVIDCTD--------RERLGETGNELFEILMDNRLKQVPLLIFANKQDLPNAMTSSEVAEAIGLV-RLEERTW--QIKACSAVEGTGIKEGMDWVCKNMKK 179          
BLAST of mRNA_H-paniculata_contig7311.15283.1 vs. uniprot
Match: Q7QA06_ANOGA (AGAP004496-PA (Fragment) n=9 Tax=Cellia TaxID=44534 RepID=Q7QA06_ANOGA)

HSP 1 Score: 84.7 bits (208), Expect = 1.470e-15
Identity = 61/183 (33.33%), Postives = 99/183 (54.10%), Query Frame = 1
Query:   10 SMEKGEVQVLIEGCPASGKSSALFRLKNGEML-LTPEPGTDGFFVENVSQAGGAKLNVWEVHSKG-VR---EKCLSTARALCFVVDCTEGSAGIHRAKAKLHET---MLSFSSQPKRKCFTVLVLANKQDVARALTPSKLELTLSLGNRADSKTWSWKVQGCSATQGSGLKEGMDWIAAVVRK 534
            S  + E+++L+ G   +GK++ L +L + E+  +TP   T GF +++V  + G KLNVW++  +  +R   +        L +V+D ++        K +L ET   +       K K   +LV ANKQDV  AL  S++   L L    D    +W++QGCSA QG+G+KEGMDW+   ++K
Sbjct:   13 SAPEKELRILLLGLDNAGKTTLLKQLASEEVTQVTP---TAGFNIKSVV-SDGFKLNVWDIGGQSKIRPYWKNYFENTDVLIYVIDSSD--------KKRLEETGDELTELLLDDKLKSVPLLVFANKQDVVGALKASEIAECLKLVKLMDR---TWQIQGCSALQGTGVKEGMDWVCKSIKK 180          
BLAST of mRNA_H-paniculata_contig7311.15283.1 vs. uniprot
Match: A0A024TTX1_9STRA (ADP-ribosylation factor n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TTX1_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.500e-15
Identity = 59/177 (33.33%), Postives = 96/177 (54.24%), Query Frame = 1
Query:   19 KGEVQVLIEGCPASGKSSALFRLKNGEMLLTPEPGTDGFFVENVSQAGGAKLNVWEVHS----KGVREKCLSTARALCFVVDCTEGSAGIHRAKAKLHETMLSFSSQPKRKCFTVLVLANKQDVARALTPSKLELTLSLGNRADSKTWSWKVQGCSATQGSGLKEGMDWIAAVVRKK 537
            K E+++L+ G  A+GK++ L++ K GE++ T    T GF +E V+     +  VW++      + +     +    L FVVD  + S  +  A+ +LH T+    +Q + +   VLV ANKQD+  A++ S++   + L   A  ++  W VQGC AT G GL EG+DWIA  +  K
Sbjct:   15 KKEMRLLMLGLDAAGKTTILYKFKLGEVVTTIP--TIGFNLETVTYKN-IQFTVWDIGGQDKIRALWRHYYANTNGLIFVVDANDRSR-VATARDELHRTL----AQDELQDACVLVFANKQDLPSAMSASEITDKMGL---AGLRSRRWFVQGCCATSGDGLYEGLDWIAKALETK 180          
BLAST of mRNA_H-paniculata_contig7311.15283.1 vs. uniprot
Match: A0A182Q9Q6_9DIPT (Uncharacterized protein n=1 Tax=Anopheles farauti TaxID=69004 RepID=A0A182Q9Q6_9DIPT)

HSP 1 Score: 85.5 bits (210), Expect = 1.690e-15
Identity = 61/183 (33.33%), Postives = 99/183 (54.10%), Query Frame = 1
Query:   10 SMEKGEVQVLIEGCPASGKSSALFRLKNGEML-LTPEPGTDGFFVENVSQAGGAKLNVWEVHSKG-VR---EKCLSTARALCFVVDCTEGSAGIHRAKAKLHET---MLSFSSQPKRKCFTVLVLANKQDVARALTPSKLELTLSLGNRADSKTWSWKVQGCSATQGSGLKEGMDWIAAVVRK 534
            S  + E+++L+ G   +GK++ L +L + E+  +TP   T GF +++V  + G KLNVW++  +  +R   +        L +V+D ++        K +L ET   +       K K   +LV ANKQDV  AL  S++   L L    D    +W++QGCSA QG+G+KEGMDW+   ++K
Sbjct:   48 STPEKELRILLLGLDNAGKTTLLKQLASEEVTQITP---TAGFNIKSVV-SDGFKLNVWDIGGQSKIRPYWKNYFENTDVLIYVIDSSD--------KKRLEETGDELTELLLDDKLKSVPLLVFANKQDVVGALKASEIAECLKLVKLTDR---TWQIQGCSALQGTGVKEGMDWVCKSIKK 215          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7311.15283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCZ7_ECTSI1.620e-5656.91ARLX, novel ARF-like Ras superfamily GTPase n=2 Ta... [more]
A0A0H5C9A6_CYBJN1.940e-1738.15ADP-ribosylation factor 1 n=4 Tax=Saccharomycetale... [more]
G2QEQ9_MYCTT8.720e-1735.63Uncharacterized protein n=5 Tax=Chaetomiaceae TaxI... [more]
B4NHQ2_DROWI7.670e-1633.91Uncharacterized protein n=11 Tax=Drosophila TaxID=... [more]
A0A7R8V192_HERIL7.850e-1631.43Hypothetical protein n=1 Tax=Hermetia illucens Tax... [more]
A0A182KGH4_9DIPT1.200e-1533.33Uncharacterized protein n=3 Tax=Pyretophorus TaxID... [more]
A0A1I8M7K6_MUSDO1.430e-1532.58Uncharacterized protein n=6 Tax=Calyptratae TaxID=... [more]
Q7QA06_ANOGA1.470e-1533.33AGAP004496-PA (Fragment) n=9 Tax=Cellia TaxID=4453... [more]
A0A024TTX1_9STRA1.500e-1533.33ADP-ribosylation factor n=1 Tax=Aphanomyces invada... [more]
A0A182Q9Q6_9DIPT1.690e-1533.33Uncharacterized protein n=1 Tax=Anopheles farauti ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7311contigH-paniculata_contig7311:552..6129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.0
Seed ortholog evalue5.2e-46
Seed eggNOG ortholog2880.D8LCZ7
KEGG koko:K07937,ko:K07941
KEGG Pathwayko04014,ko04072,ko04144,ko04666,ko05110,ko05134,map04014,map04072,map04144,map04666,map05110,map05134
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the small GTPase superfamily. Arf family
EggNOG OGsCOG1100@1,KOG0071@2759
Ec32 ortholog descriptionARLX, novel ARF-like Ras superfamily GTPase
Ec32 orthologEc-01_001690.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Exons4
Model size1351
Cds size597
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7311.15283.1prot_H-paniculata_contig7311.15283.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7311 1294..6117 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930892.9692395-UTR-H-paniculata_contig7311:551..12931622930892.9692395-UTR-H-paniculata_contig7311:551..1293Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7311 552..1293 -
1691481499.3486507-UTR-H-paniculata_contig7311:551..12931691481499.3486507-UTR-H-paniculata_contig7311:551..1293Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7311 552..1293 -
1622930893.0462542-UTR-H-paniculata_contig7311:6117..61291622930893.0462542-UTR-H-paniculata_contig7311:6117..6129Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7311 6118..6129 -
1691481499.4046006-UTR-H-paniculata_contig7311:6117..61291691481499.4046006-UTR-H-paniculata_contig7311:6117..6129Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7311 6118..6129 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930892.9857798-CDS-H-paniculata_contig7311:1293..14711622930892.9857798-CDS-H-paniculata_contig7311:1293..1471Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7311 1294..1471 -
1691481499.3614562-CDS-H-paniculata_contig7311:1293..14711691481499.3614562-CDS-H-paniculata_contig7311:1293..1471Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7311 1294..1471 -
1622930893.0010524-CDS-H-paniculata_contig7311:2564..27121622930893.0010524-CDS-H-paniculata_contig7311:2564..2712Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7311 2565..2712 -
1691481499.372879-CDS-H-paniculata_contig7311:2564..27121691481499.372879-CDS-H-paniculata_contig7311:2564..2712Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7311 2565..2712 -
1622930893.0138695-CDS-H-paniculata_contig7311:5358..55961622930893.0138695-CDS-H-paniculata_contig7311:5358..5596Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7311 5359..5596 -
1691481499.3829296-CDS-H-paniculata_contig7311:5358..55961691481499.3829296-CDS-H-paniculata_contig7311:5358..5596Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7311 5359..5596 -
1622930893.027851-CDS-H-paniculata_contig7311:6084..61171622930893.027851-CDS-H-paniculata_contig7311:6084..6117Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7311 6085..6117 -
1691481499.3931205-CDS-H-paniculata_contig7311:6084..61171691481499.3931205-CDS-H-paniculata_contig7311:6084..6117Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7311 6085..6117 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7311.15283.1

>prot_H-paniculata_contig7311.15283.1 ID=prot_H-paniculata_contig7311.15283.1|Name=mRNA_H-paniculata_contig7311.15283.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=199bp
MEKGEVQVLIEGCPASGKSSALFRLKNGEMLLTPEPGTDGFFVENVSQAG
GAKLNVWEVHSKGVREKCLSTARALCFVVDCTEGSAGIHRAKAKLHETML
SFSSQPKRKCFTVLVLANKQDVARALTPSKLELTLSLGNRADSKTWSWKV
QGCSATQGSGLKEGMDWIAAVVRKKRRRDRTPREAPDPYKLSQEGPVC*
back to top

mRNA from alignment at H-paniculata_contig7311:552..6129-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7311.15283.1 ID=mRNA_H-paniculata_contig7311.15283.1|Name=mRNA_H-paniculata_contig7311.15283.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5578bp|location=Sequence derived from alignment at H-paniculata_contig7311:552..6129- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAGGAAACTCTATGGAGAAAGGAGAGGTTCAAGTTTTGATCGAGGTGAG TCAAGTCAAAGCAACGTAACATTGCAGAGCGTTTCGGAGGGGACGCTTCG GGCGCAGCGAAAAAGAACCTTCACGTCAGTTATTCTGTCCTCGTACCAGT ATCTTCTACTATCTTCTGTTATCATCCCATAACACAGGTTGCCATGAAAA CAGGCGCCCCATACTCATTTCTTGCCTCATCACATACAGCGTCAAAGCAG GGGATATCTTAGGCTCAGCTTATCCCGAACTCTCCATGCACGCCACGCAT CGTTCCTGTCCGTGCGCTGACAGAGAAAATATAACCGCACCGCATATCGT GCGGTCTCGGTTGTCGATTGAATCAATCGAAATATTTACAGTCAAACAAC AACAGCAGGAGGAGAGGCGTCACACCAATCCCCGCATCTATCGATCTACC CATCCACCCTCTCGCCCGCCCGCCTGTTAAAGAGCTGTAAACCCTAGCGT GCATCTTCAATTCTTCTTGTTTCGATCCTCAAGGGATGCCCTGCGTCGGG AAAGAGCTCGGCGTTATTTCGACTAAAAAACGGCGAAATGCTGCTGACTC CCGAACCGGGCACGGATGGGTTCTTCGTTGAGAATGTGTCGCAGGCGGGC GGAGCTAAGCTGAATGTATGGGAGGTGCACAGCAAAGGCGTGCGAGAAAA GTGCTTGTCAACCGCCCGGGCGTTGTGCTTTGTGGTAGATTGTACCGAGG GTTCAGCCGGTATTCACAGAGGTCAGTTAATGCAACGATAGATAACAGCA CATGAGCATTAGAAACGTACTCAGGAACGTATTATTCGGAGAGGCAGTGG TCTGAAGTCCGGGTGAGTGTACAGAAGATTAATGGCACTCCCCCGACCAA TCTTCTTGAAAATTCAGTTGCACAGAGGAGCAATGCAGCTTGTGAAGCGG GGCTAGCCTAGGTTCATGAAGAATTTTGATGGCACTACTACTGAGGTACA TTGTTAACAGGGCCAAAATGTTGCTCTACTGAGGGGCAAAAGTCTGACCC CGTTCCACCCACTCAACTTCTGGAACCGGTATGTGTGGGACCGTCTTAAT CATACGATGTGCACCCATGTTTCGGTTTTTGATTTAATCCTGTGATTGTG GAAATACATTAAGCTGAATCCGGCTATAACGCGTGAAAGTATTGAAAAAA TGAATACAAAAGAAACATGTTCATTTTTCAGTATATTCAGGCAAAGCAAT CTTAGCAAGTGTGTTTTATCGGAGAGAGAAAATCTGAACTCGTTCCACCG ATCCAATATGCGGAATCGATATATGTGAAAGCGTCTCGATCATACGGTGT GCACTCACGTTTCGATTTTCGATGTAACACCGTGTTTGTGGAGATACACC GAGTTGAATGGGGGGACATAGTGTGAAAGAGTAACAATTTGGTCCTATTA AAAACGTGCCTCCGTAATAACAATTAATGAGTTTTGACACGCCTTCTGGA CGACACACTAGCTCTGTCCCATGAGTCTGGCCTATAAAGGTATTTTGTAA ATATCAATTGCAATCTCGGGTTTCGTGAAAAGTAAAGCATAGCATTCGAA AGTCTGCTGCACCTTCAGCTTGAATGTGGATACCTTCAAAATGTTTCAAA AATTCGAATGGGTGAGAACCGGGTATCTCGACCCTTTTTTTTCCCCCGGA AATGGCAAATTTTCGCGAAAACAGCTGAAAAGACCGAAATCGGCCGAAAA TCATGGTTAATGGAGTCATCCTAGGGTTGGAGGGTGGCCAATTGTTTAAC GGAGGCCGCTTCACAAAAGAGCGATGTACAATTAACGCGAATCAAAGCCG TATCGATTACATGTATTTGTGCATCTCTTAAGGTGCAGAGTCCACGAGTT GAAAAGGGATTTCTGAGGGCAACAAATGGAATATATATATACACTCATAC ACAGATGCCTGATCCCCTTCTCCGGGCGGCTCTTTCGTTAAACAAGCGAC TCAAATACCCCCCCCCCCCTACCGTAGGATGACTCAATGTTGTTAAAGTC TCAAGGAGACCTCCGATTAAGAAATGAATTTGTTGCGTTGTATCCCTTGG CGTTTCATACTATGTGGTACAATAATAATCTCATTGTTCATTACTGCCAT CTTCCCCATCAATCCACCAATTGAAGGCCGCGTCGTAAGCGGCTCTGTTA ATTGGGACCAAGCGGTCCAAAAGTCCCTCACGCTGCCTTTTCCTACTTCC GGTTTGCCCAACGTCTAAATCGTTTCCTCCCGAGCACTTTCAATACTTGG TTGTACCGCTTGGAGAGGCTCTGCCAAACCAACTCTGGAGTATCCGCATC ATACTGAGTGAACATTCTCTTGACCTCCTCTACAAGGACATCTAATGTAC GGTAGCATTTCATCTAAGAGTGTGGAGGGAGCGCTATTCCGCATACTCCA GAGTTGGTGTGGCAGAACCTCTTGAAGCGGTACAACCAAGTGTTGAAAGT GCTGGGGAGGAAACGATTTAGACATTGGGCAAACCGGAAGTGGGAAAAGG CAGTGTGAGGGACTTTTGGACCGCTTGGTCCCGATTAACAGAGCGCTTAC GACGCGCCTTAAATTGGTGGATTAATGAGTAATAGCTTTACTCTACTATG TTGTAAAAAACGTCAAGGGATACAACGCAAATAACCACTTCTTAATCAGA GGTCCCGTTGAGACTTTATGAACCACTTACCATGAATTTCAGCCGATTTT GACCTATTCGGCTGTATCTGAAAAATCTGTCATTTCCGAAAAAAACATCG AATTGGAATACCTGATTCTCAACCATTTCGTTTAAAAAAACATTTTGAAG GTATCTACATGAAAGCTGAAGGTGTAAGCTTTCGAACGGCATGTTTAATT TTTCACGAAACCCGCAATTGTTCAAGATATTTACACAATACCGTTATACA CCAGACTTAAGGGACAGAGGTGGCATTTCACATATATCCTGATGTGTGCG TTGTACCGCGTATAGTGTAGACTGCTTGAATAGCCGCAGAAAGCAGTGCT GGTAGCACTAGATCTATCGAGTGGGCACTATAGCGAGAGTTGCACAGTAG TATAGATCTCAAGCAGGTTCACTTTTCGTCAGAACGCCTACGTTGCAAAG GAGGCAAGAAAATTATTCCAGGGCAGCACCTCGTCTTGGTCTTGCTCTAT GAAATATACGCATGTCTATGAACAAGGCTATCGTTTGCTTGTTCCCCTCG ATCGCTAAACGAATGAATAATTTTTTCGACATCTCAGCGACTAGGTGACA TTGGTTCGTCATTGCAGCGGCCGACCAACCACTCGCAATGCTGCGCTCTG TGCCCAACTTGAGCTCCAACGTTAACCCTCCCCGTCCGCCCGTCCATCTG CCGTAACGTTGTTTCAGCGAAAGCGAAGTTGCACGAGACGATGTTATCGT TTTCGTCTCAGCCAAAGCGCAAGTGTTTTACGGTACTAGTGCTAGCGAAC AAACAAGACGTGGCACGGGCGCTGACGCCATCAAAGCTTGAGCTTACGTT GAGCCTTGGAAACAGGTAGGATGAGCATGGTTACAGCAAAGAACTCGTGA CGCCCGTCCTCACCAGCATGAATATTTTACGTTCACAGCATACCCGCGCG TGTTTTGCGCGAACTCATACCTATCCTAGCAGGTGTGCATGGAATGAAGT GTGCTGTCAGGTTTGCCCTGATATATCCATCAAACGCTAGGAGGGCATGT AGGGGTATCGATGCATCTACATGACTAATCCAGACACGATGTAGTTTGCC GCTTGATTCCAACTGGCTACCACGATGGACGGTTCTCTCTGCTTTCATCT TCACACGTGCGTGCGCAGTTTTCCTCCAGGCACCGCGGTGCAACTAGCTC GAATCTTAGTCGACAGGCGAGGCGAACTCTGAAACCTCGAATGAGTGTAT GGTCGTTATCATCGTGCTAACAACAATACTATTTTGCGTCGGAACGGGGC GGAGCTACATTTGAACAGCCGATCGGTCAGAGTGCGATCCAAGATCCCCA TGTTTTACATACGTTAAATAAGTAACGTAAACGCCATCCAGTTATGGCCT GATGGATCAGTTAACCTTCAACTATTGTCGATCCGGCCGGTATCATTAAT GAAGTGGTGTTACAACTGGGTTCATTGTTAGTGGGTCTCACGTGTTAGCG TTATATCTGTACCTGTAATTGGATGGTGTACCGTCTTGTCCAGGTGTATA AATGTATCCGGGTAGCAGACAACCCGACGAAAATATACTTCAGCGGCACG TCCAGGTGGACTCTTTTTATGGACCTTGCCGCAGATGGCACGTGAATGCA AGATTGCCCTTGGCAACACGTACATACATAAGTGAATGCATGCGGACATC TATTAACAGGCCAGCAATGGGTCTCTCGAATTTTTCCGACCTGTCGTCGC CATTGGGCTACATGAACTCTTTTTGACCCAATTTGATTTACTACACTGCC GCCACCTTGACCGCCGTAAAGGCTCAGCGACTTCAAGATAACATTCTGGA ATATACAGTCGCGCTTGAGGAATCTCTAAGAACACCTCATATTATTGCTC CTTGCACGCGTTGACACCGTTCGTTGATAATCCATTTATATCGGGCCTAT CTATATAGGGCCGACAGCAAGACATGGAGCTGGAAAGTTCAAGGTTGCTC AGCTACGCAGGGATCAGGTTTAAAGGAAGGGATGGATTGGATAGCAGCGG TGGTTCGGAAGAAGCGGAGGCGTGATAGGACACCCCGAGAAGCACCTGAT CCCTATAAACTGTCTCAAGAGGGACCGGTATGTTGATCGAACATGAGGGA AATTTTGACCTGGCAAGTCGCGGGTGTTTTTTTTTACGTAAGGCAGTTAA GGAGATCAGTGAAAGCAGATAATATGGACACCCGTTGGATTTTCAGGGGA AGTAGGGCTTACATACCACCGACCGCGAGGAAGCTACCGAGCCGGATGAC TTCTTATATATTGCTGTCGTGGAGTTTTGCGATCGGGGTCTTCATGGGTG TATTTGTGAAGTTTTGCTTACATCATAAATAGATACGCTCCTCCTCCTGC TGTGTCTTCGTCTTCTTAAGAGCTAAACATATTCCTGTTATTATCTTCCA GGTAAGGTAATGAAATTGGGCGTTTTTCGATTTTTTTACCATGTGTGAGT CATCGTACGGCAGGGGGGGGCATTTGAGCGGCTTTATTTAACGAAGGAGC CGCTTTGAGAGGGGGCTCGGGCATTCGTTTTTTGTTTTTTTGTGGATTTG TTGTTCGCTCTTAAACAGAAATCGCGTTTCAACGCGTGGACTGTGCACCT TTAGGGATGCACAAACACATGCACTTGGCGTGGTTTTGATTCGCTTTATT TTGCACCATTTTTTTGCGTTAACAATTGACCCCTCTACCGCAGGGTGATT CGTATGCGTGAAATACCAAACCAAGCACAAGGAAGGGTGAATGTCGTGTG CGTGTGTCTTTTCCTTTTGGTGTTATATCCGCTCGTTTCCTTGTTTATCT ACATCGGGAATGGGTGTGTGTGGCATCA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig7311:552..6129-

>mRNA_H-paniculata_contig7311.15283.1 ID=mRNA_H-paniculata_contig7311.15283.1|Name=mRNA_H-paniculata_contig7311.15283.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1194bp|location=Sequence derived from alignment at H-paniculata_contig7311:552..6129- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGAAAGGAGAGGTTCAAGTTTTGATCGAGATGGAGAAAGGAGAGGT
TCAAGTTTTGATCGAGGGATGCCCTGCGTCGGGAAAGAGCTCGGCGTTAT
TTCGACTAAAAAACGGCGAAATGCTGCTGACTCCCGAACCGGGCACGGAT
GGGTTCTTCGTTGAGAATGTGTCGCAGGCGGGCGGAGCTAAGCTGAATGT
ATGGGAGGTGCACAGCAAAGGCGTGCGAGAAAAGTGCTTGTCAACCGCCC
GGGCGTTGTGCTTTGTGGTAGATTGTACCGAGGGTTCAGCCGGTATTCAC
AGAGGGATGCCCTGCGTCGGGAAAGAGCTCGGCGTTATTTCGACTAAAAA
ACGGCGAAATGCTGCTGACTCCCGAACCGGGCACGGATGGGTTCTTCGTT
GAGAATGTGTCGCAGGCGGGCGGAGCTAAGCTGAATGTATGGGAGGTGCA
CAGCAAAGGCGTGCGAGAAAAGTGCTTGTCAACCGCCCGGGCGTTGTGCT
TTGTGGTAGATTGTACCGAGGGTTCAGCCGGTATTCACAGAGCGAAAGCG
AAGTTGCACGAGACGATGTTATCGTTTTCGTCTCAGCCAAAGCGCAAGTG
TTTTACGGTACTAGTGCTAGCGAACAAACAAGACGTGGCACGGGCGCTGA
CGCCATCAAAGCTTGAGCTTACGTTGAGCCTTGGAAACAGCGAAAGCGAA
GTTGCACGAGACGATGTTATCGTTTTCGTCTCAGCCAAAGCGCAAGTGTT
TTACGGTACTAGTGCTAGCGAACAAACAAGACGTGGCACGGGCGCTGACG
CCATCAAAGCTTGAGCTTACGTTGAGCCTTGGAAACAGGGCCGACAGCAA
GACATGGAGCTGGAAAGTTCAAGGTTGCTCAGCTACGCAGGGATCAGGTT
TAAAGGAAGGGATGGATTGGATAGCAGCGGTGGTTCGGAAGAAGCGGAGG
CGTGATAGGACACCCCGAGAAGCACCTGATCCCTATAAACTGTCTCAAGA
GGGACCGGTATGTTGAGGCCGACAGCAAGACATGGAGCTGGAAAGTTCAA
GGTTGCTCAGCTACGCAGGGATCAGGTTTAAAGGAAGGGATGGATTGGAT
AGCAGCGGTGGTTCGGAAGAAGCGGAGGCGTGATAGGACACCCCGAGAAG
CACCTGATCCCTATAAACTGTCTCAAGAGGGACCGGTATGTTGA
back to top