mRNA_H-paniculata_contig73109.15282.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig73109.15282.1
Unique NamemRNA_H-paniculata_contig73109.15282.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig73109.15282.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 4.410e-40
Identity = 76/186 (40.86%), Postives = 123/186 (66.13%), Query Frame = 1 
Query:   34 HQLGHWLIALDGTNAFSSVKRATILEEMAIRTPKLTPFVAKCYGEKPADIIFQMDTGERRNISSNTGIHQGDGLGPALFSMPMGPILCKCREQFEALGVELLAFLDDLVLAMRELTEENLRAIHFLVQELPRIGLHNNNAKKKVVPPMNRIPAEREIAALAAMGISVAEGRGAVVVGTLIGTDAFV 591
            HQ G+W+I  D +NAF++ KR  I+ + A   P L  ++A+CY E PA  +++MD+GERR +   +G+ QGDG+GP LFS+ + PI+ K +++++ LGV   A++DD+ L +++LTEE+++A+  LV EL  +G+  N AK   +PP   +  +++   L  +G++VA G G  VVG  IGTD +V
Sbjct:  671 HQTGNWIIQTDCSNAFNTGKRTAIMAQAAKSLPDLVGYIARCYDEIPATAVYEMDSGERRTLECTSGVQQGDGMGPPLFSLILIPIILKLQDKYKPLGVAFKAYMDDITLHLKDLTEESVQAMTDLVDELAEVGIVVNRAKSSALPPPGHMITDQQRRLLEGVGLTVA-GEGITVVGVPIGTDNYV 855
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BLAST of mRNA_H-paniculata_contig73109.15282.1 vs. uniprot
Match: A0A0G4GD26_VITBC (Reverse transcriptase domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GD26_VITBC)

HSP 1 Score: 72.0 bits (175), Expect = 3.200e-11
Identity = 40/102 (39.22%), Postives = 58/102 (56.86%), Query Frame = 1 
Query:   52 LIALDGTNAFSSVKRATILEEMAIRTPKLTPFVAKCYGEKPADIIFQMDTGERRNISSNTGIHQGDGLGPALFSMPMGPILCKCREQFEALGVELLAFLDDL 357
            L+ LD  NAF+S+ R +IL+E+ I+ P    F  + YG  PA++ ++M  G    I S  G  QGD  GP LF + + P L K +E+F    V   AF+DD+
Sbjct:  565 LVTLDCKNAFNSIDRQSILDELGIKWPSFVDFFWQFYGT-PAELWYRMKDGRTETILSQEGTQQGDAAGPFLFCLGLHPALVKLQEEFPDDFVS--AFMDDI 663
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BLAST of mRNA_H-paniculata_contig73109.15282.1 vs. uniprot
Match: A0A5A8EGH3_CAFRO (Reverse transcriptase domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EGH3_CAFRO)

HSP 1 Score: 72.0 bits (175), Expect = 3.350e-11
Identity = 46/139 (33.09%), Postives = 71/139 (51.08%), Query Frame = 1 
Query:   52 LIALDGTNAFSSVKRATILEEMAIRTPKLTPFVAKCYGEKPADIIFQMDTGERRNISSNTGIHQGDGLGPALFSMPMGPILCKCREQFEALGVELLAFLDDLVLAMRELTEENLRAIHFLVQELPRIGLHNNNAKKKVV 468
            ++ALD  NA++SV R  ++EE+     KL P V   YG   + ++F  D GE   + SN G+ QGD    ALF++ + P++ + R  F    V +L   DD  L      +   RA   L + L  +GL  N +K +V+
Sbjct:  346 VVALDMANAYNSVSRRAMIEEVRRLDEKLVPAVLALYGSS-SPLLFATDEGEVFELKSNRGVRQGDPAAGALFAIAVHPLVDEVRRAFP--DVLILQMADDTTLVGPR--KSAFRAAQMLAERLSTVGLRMNTSKTQVL 479
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BLAST of mRNA_H-paniculata_contig73109.15282.1 vs. uniprot
Match: A0A5A8C6D6_CAFRO (Reverse transcriptase domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C6D6_CAFRO)

HSP 1 Score: 72.0 bits (175), Expect = 3.390e-11
Identity = 46/139 (33.09%), Postives = 71/139 (51.08%), Query Frame = 1 
Query:   52 LIALDGTNAFSSVKRATILEEMAIRTPKLTPFVAKCYGEKPADIIFQMDTGERRNISSNTGIHQGDGLGPALFSMPMGPILCKCREQFEALGVELLAFLDDLVLAMRELTEENLRAIHFLVQELPRIGLHNNNAKKKVV 468
            ++ALD  NA++SV R  ++EE+     KL P V   YG   + ++F  D GE   + SN G+ QGD    ALF++ + P++ + R  F    V +L   DD  L      +   RA   L + L  +GL  N +K +V+
Sbjct:  444 VVALDMANAYNSVSRRAMIEEVRRLDEKLVPAVLALYGSS-SPLLFATDEGEVFELESNRGVRQGDPAAGALFAIAVHPLVDEVRRAFP--DVLILQMADDTTLVGPR--KSAFRAAQMLAERLSTVGLRMNTSKTQVL 577
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BLAST of mRNA_H-paniculata_contig73109.15282.1 vs. uniprot
Match: A0A5A8EA13_CAFRO (Reverse transcriptase domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EA13_CAFRO)

HSP 1 Score: 70.5 bits (171), Expect = 1.070e-10
Identity = 45/139 (32.37%), Postives = 70/139 (50.36%), Query Frame = 1 
Query:   52 LIALDGTNAFSSVKRATILEEMAIRTPKLTPFVAKCYGEKPADIIFQMDTGERRNISSNTGIHQGDGLGPALFSMPMGPILCKCREQFEALGVELLAFLDDLVLAMRELTEENLRAIHFLVQELPRIGLHNNNAKKKVV 468
            ++ALD  NA++SV R  ++EE+     KL P V   YG   + ++F  D GE   + SN G+ QGD    ALF++ + P++ + R  F    V +L   DD  L          +A   L + L  +GL  N +K +V+
Sbjct:  132 VVALDMANAYNSVSRRAMIEEVRRLDEKLVPAVLALYGSS-SPLLFATDEGEVFELKSNRGVRQGDPAAGALFAIAVHPLVDEVRRAFP--DVLILQMADDTTLVGPR--RSAFKAAQMLAERLSTVGLRMNTSKTQVL 265
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BLAST of mRNA_H-paniculata_contig73109.15282.1 vs. uniprot
Match: A0A5A8CHM4_CAFRO (Reverse transcriptase domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CHM4_CAFRO)

HSP 1 Score: 70.5 bits (171), Expect = 1.080e-10
Identity = 45/139 (32.37%), Postives = 70/139 (50.36%), Query Frame = 1 
Query:   52 LIALDGTNAFSSVKRATILEEMAIRTPKLTPFVAKCYGEKPADIIFQMDTGERRNISSNTGIHQGDGLGPALFSMPMGPILCKCREQFEALGVELLAFLDDLVLAMRELTEENLRAIHFLVQELPRIGLHNNNAKKKVV 468
            ++ALD  NA++SV R  ++EE+     KL P V   YG   + ++F  D GE   + SN G+ QGD    ALF++ + P++ + R  F    V +L   DD  L          +A   L + L  +GL  N +K +V+
Sbjct:  645 VVALDMANAYNSVSRRAMIEEVRRLDEKLVPAVLALYGSS-SPLLFATDEGEVFELKSNRGVRQGDPAAGALFAIAVHPLVDEVRRAFP--DVLILQMADDTTLVGPR--RSAFKAAQMLAERLSTVGLRMNTSKTQVL 778
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BLAST of mRNA_H-paniculata_contig73109.15282.1 vs. uniprot
Match: A0A5A8C002_CAFRO (Reverse transcriptase domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C002_CAFRO)

HSP 1 Score: 70.5 bits (171), Expect = 1.130e-10
Identity = 45/139 (32.37%), Postives = 70/139 (50.36%), Query Frame = 1 
Query:   52 LIALDGTNAFSSVKRATILEEMAIRTPKLTPFVAKCYGEKPADIIFQMDTGERRNISSNTGIHQGDGLGPALFSMPMGPILCKCREQFEALGVELLAFLDDLVLAMRELTEENLRAIHFLVQELPRIGLHNNNAKKKVV 468
            ++ALD  NA++SV R  ++EE+     KL P V   YG   + ++F  D GE   + SN G+ QGD    ALF++ + P++ + R  F    V +L   DD  L          +A   L + L  +GL  N +K +V+
Sbjct:  710 VVALDMANAYNSVSRRAMIEEVRRLDEKLVPAVLALYGSS-SPLLFATDEGEVFELESNRGVRQGDPAAGALFAIAVHPLVDEVRRAFP--DVLILQMADDTTLVGPR--RSAFKAAQMLAERLSTVGLRMNTSKTQVL 843
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BLAST of mRNA_H-paniculata_contig73109.15282.1 vs. uniprot
Match: A0A5A8EK58_CAFRO (Reverse transcriptase domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EK58_CAFRO)

HSP 1 Score: 70.5 bits (171), Expect = 1.140e-10
Identity = 45/139 (32.37%), Postives = 70/139 (50.36%), Query Frame = 1 
Query:   52 LIALDGTNAFSSVKRATILEEMAIRTPKLTPFVAKCYGEKPADIIFQMDTGERRNISSNTGIHQGDGLGPALFSMPMGPILCKCREQFEALGVELLAFLDDLVLAMRELTEENLRAIHFLVQELPRIGLHNNNAKKKVV 468
            ++ALD  NA++SV R  ++EE+     KL P V   YG   + ++F  D GE   + SN G+ QGD    ALF++ + P++ + R  F    V +L   DD  L          +A   L + L  +GL  N +K +V+
Sbjct: 1036 VVALDMANAYNSVSRRAMIEEVRRLDEKLVPAVLALYGSS-SPLLFATDEGEVFELKSNRGVRQGDPAAGALFAIAVHPLVDEVRRAFP--DVLILQMADDTTLVGPR--RSAFKAAQMLAERLSTVGLRMNTSKTQVL 1169
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BLAST of mRNA_H-paniculata_contig73109.15282.1 vs. uniprot
Match: A0A5A8D1P1_CAFRO (Reverse transcriptase domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D1P1_CAFRO)

HSP 1 Score: 70.5 bits (171), Expect = 1.140e-10
Identity = 45/139 (32.37%), Postives = 70/139 (50.36%), Query Frame = 1 
Query:   52 LIALDGTNAFSSVKRATILEEMAIRTPKLTPFVAKCYGEKPADIIFQMDTGERRNISSNTGIHQGDGLGPALFSMPMGPILCKCREQFEALGVELLAFLDDLVLAMRELTEENLRAIHFLVQELPRIGLHNNNAKKKVV 468
            ++ALD  NA++SV R  ++EE+     KL P V   YG   + ++F  D GE   + SN G+ QGD    ALF++ + P++ + R  F    V +L   DD  L          +A   L + L  +GL  N +K +V+
Sbjct:   71 VVALDMANAYNSVSRRAMIEEVRRLDEKLVPAVLALYGSS-SPLLFATDEGEVFELKSNRGVRQGDPAAGALFAIAVHPLVDEVRRAFP--DVLILQMADDTTLVGPR--RSAFKAAQMLAERLSTVGLRMNTSKTQVL 204
[Close]
BLAST of mRNA_H-paniculata_contig73109.15282.1 vs. uniprot
Match: A0A5A8D053_CAFRO (Reverse transcriptase domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D053_CAFRO)

HSP 1 Score: 70.5 bits (171), Expect = 1.160e-10
Identity = 45/139 (32.37%), Postives = 70/139 (50.36%), Query Frame = 1 
Query:   52 LIALDGTNAFSSVKRATILEEMAIRTPKLTPFVAKCYGEKPADIIFQMDTGERRNISSNTGIHQGDGLGPALFSMPMGPILCKCREQFEALGVELLAFLDDLVLAMRELTEENLRAIHFLVQELPRIGLHNNNAKKKVV 468
            ++ALD  NA++SV R  ++EE+     KL P V   YG   + ++F  D GE   + SN G+ QGD    ALF++ + P++ + R  F    V +L   DD  L          +A   L + L  +GL  N +K +V+
Sbjct: 1438 VVALDMANAYNSVSRRAMIEEVRRLDEKLVPAVLALYGSS-SPLLFATDEGEVFELKSNRGVRQGDPAAGALFAIAVHPLVDEVRRAFP--DVLILQMADDTTLVGPR--RSAFKAAQMLAERLSTVGLRMNTSKTQVL 1571
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig73109.15282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JH58_9PHAE4.410e-4040.86Reverse transcriptase domain-containing protein n=... [more]
A0A0G4GD26_VITBC3.200e-1139.22Reverse transcriptase domain-containing protein n=... [more]
A0A5A8EGH3_CAFRO3.350e-1133.09Reverse transcriptase domain-containing protein n=... [more]
A0A5A8C6D6_CAFRO3.390e-1133.09Reverse transcriptase domain-containing protein n=... [more]
A0A5A8EA13_CAFRO1.070e-1032.37Reverse transcriptase domain-containing protein n=... [more]
A0A5A8CHM4_CAFRO1.080e-1032.37Reverse transcriptase domain-containing protein n=... [more]
A0A5A8C002_CAFRO1.130e-1032.37Reverse transcriptase domain-containing protein n=... [more]
A0A5A8EK58_CAFRO1.140e-1032.37Reverse transcriptase domain-containing protein n=... [more]
A0A5A8D1P1_CAFRO1.140e-1032.37Reverse transcriptase domain-containing protein n=... [more]
A0A5A8D053_CAFRO1.160e-1032.37Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig73109contigH-paniculata_contig73109:7..597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score67.8
Seed ortholog evalue6.5e-09
Seed eggNOG ortholog400682.PAC_15701845
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs39QPF@33154,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size591
Cds size591
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930892.9119043-CDS-H-paniculata_contig73109:6..5971622930892.9119043-CDS-H-paniculata_contig73109:6..597Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig73109 7..597 -
1691481499.3224185-CDS-H-paniculata_contig73109:6..5971691481499.3224185-CDS-H-paniculata_contig73109:6..597Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig73109 7..597 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig73109.15282.1prot_H-paniculata_contig73109.15282.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig73109 7..597 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig73109.15282.1

>prot_H-paniculata_contig73109.15282.1 ID=prot_H-paniculata_contig73109.15282.1|Name=mRNA_H-paniculata_contig73109.15282.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=197bp
ARSSWASAKAHHQLGHWLIALDGTNAFSSVKRATILEEMAIRTPKLTPFV
AKCYGEKPADIIFQMDTGERRNISSNTGIHQGDGLGPALFSMPMGPILCK
CREQFEALGVELLAFLDDLVLAMRELTEENLRAIHFLVQELPRIGLHNNN
AKKKVVPPMNRIPAEREIAALAAMGISVAEGRGAVVVGTLIGTDAFV
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mRNA from alignment at H-paniculata_contig73109:7..597-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig73109.15282.1 ID=mRNA_H-paniculata_contig73109.15282.1|Name=mRNA_H-paniculata_contig73109.15282.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=591bp|location=Sequence derived from alignment at H-paniculata_contig73109:7..597- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCCGGAGCTCATGGGCCTCCGCGAAAGCACACCACCAATTGGGGCATTG
GCTTATCGCCCTCGACGGTACCAATGCCTTCAGCTCTGTCAAACGGGCGA
CGATCTTGGAAGAAATGGCAATCCGCACCCCGAAACTGACACCTTTCGTT
GCCAAATGCTACGGGGAGAAGCCGGCAGATATAATTTTTCAGATGGATAC
CGGTGAACGCAGGAACATCTCCTCGAACACGGGAATCCACCAGGGCGACG
GACTGGGACCCGCCCTCTTCTCTATGCCCATGGGACCGATCTTGTGCAAG
TGCCGAGAACAATTCGAGGCTCTGGGGGTGGAGTTGTTGGCATTCCTGGA
CGATCTGGTGCTGGCAATGAGGGAGCTGACGGAAGAAAATTTACGGGCGA
TCCATTTCCTCGTGCAAGAGCTACCACGCATAGGATTGCACAATAACAAC
GCCAAGAAGAAGGTGGTGCCCCCAATGAATCGTATCCCCGCCGAAAGAGA
GATCGCCGCGCTGGCGGCGATGGGCATCAGCGTCGCAGAGGGAAGGGGGG
CTGTGGTGGTGGGTACACTGATTGGGACCGACGCATTCGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig73109:7..597-

>mRNA_H-paniculata_contig73109.15282.1 ID=mRNA_H-paniculata_contig73109.15282.1|Name=mRNA_H-paniculata_contig73109.15282.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1182bp|location=Sequence derived from alignment at H-paniculata_contig73109:7..597- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCCGGAGCTCATGGGCCTCCGCGAAAGCACACCACCAATTGGGGCATTG
GCTTATCGCCCTCGACGGTACCAATGCCTTCAGCTCTGTCAAACGGGCGA
CGATCTTGGAAGAAATGGCAATCCGCACCCCGAAACTGACACCTTTCGTT
GCCAAATGCTACGGGGAGAAGCCGGCAGATATAATTTTTCAGATGGATAC
CGGTGAACGCAGGAACATCTCCTCGAACACGGGAATCCACCAGGGCGACG
GACTGGGACCCGCCCTCTTCTCTATGCCCATGGGACCGATCTTGTGCAAG
TGCCGAGAACAATTCGAGGCTCTGGGGGTGGAGTTGTTGGCATTCCTGGA
CGATCTGGTGCTGGCAATGAGGGAGCTGACGGAAGAAAATTTACGGGCGA
TCCATTTCCTCGTGCAAGAGCTACCACGCATAGGATTGCACAATAACAAC
GCCAAGAAGAAGGTGGTGCCCCCAATGAATCGTATCCCCGCCGAAAGAGA
GATCGCCGCGCTGGCGGCGATGGGCATCAGCGTCGCAGAGGGAAGGGGGG
CTGTGGTGGTGGGTACACTGATTGGGACCGACGCATTCGTTGCCCGGAGC
TCATGGGCCTCCGCGAAAGCACACCACCAATTGGGGCATTGGCTTATCGC
CCTCGACGGTACCAATGCCTTCAGCTCTGTCAAACGGGCGACGATCTTGG
AAGAAATGGCAATCCGCACCCCGAAACTGACACCTTTCGTTGCCAAATGC
TACGGGGAGAAGCCGGCAGATATAATTTTTCAGATGGATACCGGTGAACG
CAGGAACATCTCCTCGAACACGGGAATCCACCAGGGCGACGGACTGGGAC
CCGCCCTCTTCTCTATGCCCATGGGACCGATCTTGTGCAAGTGCCGAGAA
CAATTCGAGGCTCTGGGGGTGGAGTTGTTGGCATTCCTGGACGATCTGGT
GCTGGCAATGAGGGAGCTGACGGAAGAAAATTTACGGGCGATCCATTTCC
TCGTGCAAGAGCTACCACGCATAGGATTGCACAATAACAACGCCAAGAAG
AAGGTGGTGCCCCCAATGAATCGTATCCCCGCCGAAAGAGAGATCGCCGC
GCTGGCGGCGATGGGCATCAGCGTCGCAGAGGGAAGGGGGGCTGTGGTGG
TGGGTACACTGATTGGGACCGACGCATTCGTT
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