mRNA_H-paniculata_contig73057.15277.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig73057.15277.1
Unique NamemRNA_H-paniculata_contig73057.15277.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig73057.15277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig73057contigH-paniculata_contig73057:246..626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size297
Cds size297
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930892.0120249-CDS-H-paniculata_contig73057:245..4931622930892.0120249-CDS-H-paniculata_contig73057:245..493Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig73057 246..493 -
1691481498.9383037-CDS-H-paniculata_contig73057:245..4931691481498.9383037-CDS-H-paniculata_contig73057:245..493Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig73057 246..493 -
1622930892.02797-CDS-H-paniculata_contig73057:577..6261622930892.02797-CDS-H-paniculata_contig73057:577..626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig73057 578..626 -
1691481498.9468198-CDS-H-paniculata_contig73057:577..6261691481498.9468198-CDS-H-paniculata_contig73057:577..626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig73057 578..626 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig73057.15277.1prot_H-paniculata_contig73057.15277.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig73057 246..626 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig73057.15277.1

>prot_H-paniculata_contig73057.15277.1 ID=prot_H-paniculata_contig73057.15277.1|Name=mRNA_H-paniculata_contig73057.15277.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
KRFNGNCSHCGKHGHRENIARRCPKRHHDTNEGAVALMATIREPKAMTAV
SDVRKTTDTPVMTRGKEHWNSDTGATDHITSDETAFGDYTPALSGTMC*
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mRNA from alignment at H-paniculata_contig73057:246..626-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig73057.15277.1 ID=mRNA_H-paniculata_contig73057.15277.1|Name=mRNA_H-paniculata_contig73057.15277.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=381bp|location=Sequence derived from alignment at H-paniculata_contig73057:246..626- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAAGGTTCAACGGCAATTGCAGCCACTGCGGGAAACATGGACATCGCGG
TGAGGCTTGCTGGGGCGCCAAAGGGGACGATCAAAAGAAAACGGAAAAGG
ATCGAGGCCTATGCTGGGTGTGCGGTAGCTCAGAGAACATCGCGAGACGG
TGCCCGAAACGTCACCACGATACCAACGAAGGAGCAGTAGCGCTCATGGC
TACCATAAGAGAACCCAAGGCAATGACGGCCGTAAGTGACGTTCGCAAAA
CAACAGACACCCCTGTTATGACCAGAGGGAAGGAACACTGGAACTCAGAT
ACCGGCGCGACAGACCACATAACGTCGGATGAGACTGCGTTCGGCGACTA
CACTCCAGCGCTCTCGGGGACCATGTGTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig73057:246..626-

>mRNA_H-paniculata_contig73057.15277.1 ID=mRNA_H-paniculata_contig73057.15277.1|Name=mRNA_H-paniculata_contig73057.15277.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig73057:246..626- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAAGGTTCAACGGCAATTGCAGCCACTGCGGGAAACATGGACATCGCGA
AAAGGTTCAACGGCAATTGCAGCCACTGCGGGAAACATGGACATCGCGAG
AACATCGCGAGACGGTGCCCGAAACGTCACCACGATACCAACGAAGGAGC
AGTAGCGCTCATGGCTACCATAAGAGAACCCAAGGCAATGACGGCCGTAA
GTGACGTTCGCAAAACAACAGACACCCCTGTTATGACCAGAGGGAAGGAA
CACTGGAACTCAGATACCGGCGCGACAGACCACATAACGTCGGATGAGAC
TGCGTTCGGCGACTACACTCCAGCGCTCTCGGGGACCATGTGTTAAAGAA
CATCGCGAGACGGTGCCCGAAACGTCACCACGATACCAACGAAGGAGCAG
TAGCGCTCATGGCTACCATAAGAGAACCCAAGGCAATGACGGCCGTAAGT
GACGTTCGCAAAACAACAGACACCCCTGTTATGACCAGAGGGAAGGAACA
CTGGAACTCAGATACCGGCGCGACAGACCACATAACGTCGGATGAGACTG
CGTTCGGCGACTACACTCCAGCGCTCTCGGGGACCATGTGTTAA
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