mRNA_H-paniculata_contig7301.15273.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7301.15273.1
Unique NamemRNA_H-paniculata_contig7301.15273.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7301.15273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7301contigH-paniculata_contig7301:317..4055 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1691
Cds size1389
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7301.15273.1prot_H-paniculata_contig7301.15273.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7301 618..4055 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930891.31604-UTR-H-paniculata_contig7301:316..6171622930891.31604-UTR-H-paniculata_contig7301:316..617Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7301 317..617 +
1691481498.7167795-UTR-H-paniculata_contig7301:316..6171691481498.7167795-UTR-H-paniculata_contig7301:316..617Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7301 317..617 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930891.3309147-CDS-H-paniculata_contig7301:617..6421622930891.3309147-CDS-H-paniculata_contig7301:617..642Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7301 618..642 +
1691481498.731171-CDS-H-paniculata_contig7301:617..6421691481498.731171-CDS-H-paniculata_contig7301:617..642Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7301 618..642 +
1622930891.3508368-CDS-H-paniculata_contig7301:2691..40551622930891.3508368-CDS-H-paniculata_contig7301:2691..4055Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7301 2692..4055 +
1691481498.7399166-CDS-H-paniculata_contig7301:2691..40551691481498.7399166-CDS-H-paniculata_contig7301:2691..4055Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7301 2692..4055 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7301.15273.1

>prot_H-paniculata_contig7301.15273.1 ID=prot_H-paniculata_contig7301.15273.1|Name=mRNA_H-paniculata_contig7301.15273.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=463bp
MEDSLATEGSSYSSYTNNNSRLHNRNSSSNNNNNTDSRTNNLHSRRSFTD
WQPPPHHSMLHSKTAPADPHRGSGLLQHPSNASPPDADVFMMPTAGFARK
RPEADRSPPRRRPEPPASRVLSVGDMMNSGGGGRDMSTASASAKKNGLLV
TSSTGAISSVPGRGGEAVASGKALGNAVHGNKGSGMVEFYTGGGGSRANA
FEREAPAAPRQRGYNMRNFLLDGDAAGNDRMGAQTSEMRSGVQASRGFSA
MPMAVMKVHAVTATAGKNGSSYGGGGDDGVYKASSSRFDSNAAAGGRRGI
MTPSGEGAPHPPPPPPSNRGTVGDSFNGSSSSNGNGSSNNSNSNSNEGRG
HLLDGHGYHRENAAAAAAAAGSLRPNSNAAAAPERFRRRHAGSPPSNPGH
VAAPAAVTSVAIKRPATFASSSSFPPTVDSNARGASGVRGSSGMGAPGSG
AFSSGYEHGYGVR
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mRNA from alignment at H-paniculata_contig7301:317..4055+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7301.15273.1 ID=mRNA_H-paniculata_contig7301.15273.1|Name=mRNA_H-paniculata_contig7301.15273.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3739bp|location=Sequence derived from alignment at H-paniculata_contig7301:317..4055+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATCCGCAATCGCAAAGCAACATCTAACATCTTCGAGTCTAAACCACCAC
CACCATCAACACGACCATCGCCATCAACACCTCTATCATCATCACCACCT
TTGTGCTTCCGACAGCTTTCTCTCTCGGGGCAGCTACTGCTCTCCTTGGC
AGCTGTGTGAGAGACGAACAGCTCTCTAAGGAACTTTCCCACTGACTGAC
ATCACGCGCAGCAGCAAACTTGACAGCAAGAGCGGCAGCAGTGTTTTCAC
GTTGGAAACAGCAGGGGAAGCAAGCGGCCAGGACAGGGCTCCTGTGCGAT
CATGGAGGACTCCCTCGCAACAGAAGGTAAGACAGTGTGTTTACTGAAAG
GTGCGTTCTCGGAGCACCGTGAGTGCGGGTTGTTAGACAGGGCGCAGCAG
CTGTGATGGGTGTTTGCGGGCTGCTTTACAAAAGTGCGTATTAGCCACAG
CTGAGATGTGATGATTCGACGATACCGTTCGATACTGTTGTCTGCTGGCT
AAGGGACGATAGCGAGGAATTTAGTGCCATTATTAAGGTGATAGCGACCT
TGGTTGCAGCCGCATTCCAAACAGTTCGCACGGTCAATGAGTCCACAAGC
AGCACCATCGGCATGCCGGGGCTTTGAGTACATCCCATTCTGGACATGGC
AAGACCACCGCATCCCACACGCCTTGAATTTTGCTACTGTCTTTTTGGGC
GCACCACCATTTGAGACAGACGGTGAACGTTCTGCTCGGGGTGCTGCTGC
TGAAAAGGCGTTTGTTAGCTGAGCCATCCAGCCAATATTTCGATGCCCAC
ACCGCCTCAGTCATTGTATGGTGCTGCCTGCTAGCCCTGCGGCGTGCTAT
GGTGTCGCCCGTCGGGGTCACTGCTGCTGCGGCCGCGGCTGGTCGCCTTT
TCGTGTGTTGAGACATGCATGTATGTATCCATTTATCAATCTGAATCTCT
CCTGCTGACCAAGCCTGTCGGATAGGAAACGACACGACACGTTGCAGTTT
GTTTTCCCATATTTTTTTTCGAGGGAAGAATGATGATCGTTCGGCACTCT
GAGCAGCAGCACAGCTTCTGTACAGACGACCACACGGTCAGTTTGTTTCT
GTAGTATACTGTGGTCTTTCTGCATGCGCACACGCCTCGGCTCTCTGTCC
TGTACAGAATGGCTGATATTGCGATTCCCAAAGACTCTTACGCAGCGATG
CTCGCTATGCCTTTTGGCCAGCAGAGCCAGTTTTTCTGAACGGACTTAGC
CCCAAAAATCAGCGTCTTCGGCCCGCACAAACTTTGGCGCAAAGTTTTCA
ATGTGACCTTTCTGCGGCGGGCCCATGGCATGACACAATCTTTCCCGACC
AACATACATTTTCCCATATATGTACATGCGACTACCAAATACTGATTGTC
TGTTACACAACGGCCCAGGGTACGCAGCGGGACAAAAACAGCCCATCGAA
ACAGACAGCAAGCAGTACACACAACCTTGACGAACGATTGAATGAATGCA
TGCCCCTTTTGAGGGATGCGACTTGTCTTCCGTGTATCGTACCGCAGTGG
TTAGTCCACGACGTGGTAGGTACTGAACAGATATTTTAAAAATGTCTTCA
GTTCTGGTACACAGGCATGGGTTCTGACACATGTACTAATGCAGGTATAC
GATCGCACAGTAGTCGTCTGTACCACACTATAGTACGGTACTGCATCGTC
CTACGGAGGATCTATCGTTTGCGTGGCCTGTTCTTTTTTTCAGAAAACAG
ATGCAATCTCTCATGGATGTCGCCTACACAGCGTCTGTTGAACAATAAAC
ATGACAAGTGAGTGATTGCCCTGAAAATATGTGCCGCGACCATTGTCACA
ATCCGCCGCATGCGACCTGTCCATCTATCGCTCATGGAGGGTCAATCATA
CTCGGAGAATATACACCGTTGCTGTCAGCGCACCTGGTGGTCAAGCTGGA
CTTTTTTGAAATTTTCGGATCCAACACCTGTAGCACACAGAAGTACACAA
GAATATATTAATAGCACAGGCAGGTACTTGCGGATTTCTCCCGTGTTGGT
ATTGTCGTATGTGTTCTAGTATCGGTAATTTTCATGTACACACGACAGCC
AGTGTTTCCGGTGGTCGGTCTATCGTTGTTCCCCTTGTTGCGTATTTATG
TATCCCGCAAAGGATTGTGGCAATATATTGCGTCCGACGCAAAAAATTGG
TACATGCACACAGCCGAGGCTGCACGTGCCGGCGCTGTAGTAATCCCACA
CGCCGCAGTGTTTGTTGTTGTCCCCGATCTTATCCGATCCACACCACAAT
AATGAATGCTTTGTCCCAACCCCCACTTTCAAGTAATCACCTCCCACCTT
GCTCAACCACCCCGCTCCCCAACAGGTTCCTCCTATTCCAGCTACACAAA
TAACAACAGCCGACTACACAACCGCAACAGTAGCAGCAACAACAACAACA
ACACCGACAGCCGTACAAACAACCTGCACTCACGCCGCAGCTTCACAGAC
TGGCAACCGCCCCCTCATCATAGCATGCTGCACAGCAAAACAGCTCCCGC
CGATCCCCACAGAGGGTCAGGCCTGCTACAACACCCCTCCAACGCTTCGC
CACCCGACGCCGACGTCTTCATGATGCCTACGGCTGGCTTCGCCCGGAAG
CGCCCGGAGGCGGATCGGTCGCCTCCCCGCCGCCGTCCCGAGCCGCCTGC
ATCTCGCGTCCTGTCCGTTGGCGATATGATGAACAGCGGAGGCGGAGGGC
GTGACATGTCGACTGCGAGCGCATCGGCGAAGAAGAACGGGCTATTAGTA
ACGTCATCGACTGGTGCTATTAGCTCGGTGCCGGGAAGAGGAGGAGAAGC
AGTGGCGTCGGGCAAAGCGTTAGGAAACGCGGTCCATGGTAACAAGGGCT
CAGGGATGGTCGAATTTTATACTGGCGGCGGTGGCAGCCGCGCGAATGCG
TTCGAGAGGGAAGCACCCGCTGCGCCTCGCCAACGGGGATACAACATGCG
TAACTTTTTGTTGGACGGCGACGCTGCTGGCAACGACAGGATGGGCGCCC
AGACGTCCGAGATGCGTTCGGGTGTCCAGGCGAGCCGAGGTTTTTCCGCC
ATGCCCATGGCTGTAATGAAGGTACACGCGGTCACGGCCACCGCCGGAAA
AAACGGGAGCTCCTACGGTGGCGGCGGCGATGACGGCGTGTACAAGGCTA
GTAGTAGTAGGTTCGACAGCAACGCGGCGGCCGGCGGTCGTCGCGGAATA
ATGACTCCTTCCGGTGAAGGTGCTCCTCATCCTCCTCCTCCTCCTCCCAG
TAACAGGGGAACCGTAGGGGACAGTTTTAACGGGAGCAGCAGTAGCAATG
GTAACGGCAGCAGCAACAACAGCAACAGCAACAGCAACGAAGGCCGAGGT
CATCTCCTTGACGGTCATGGCTACCACCGAGAGAACGCTGCGGCCGCCGC
CGCGGCCGCCGGATCTCTCAGGCCGAACAGCAATGCTGCCGCTGCGCCCG
AGCGTTTCCGCCGCCGCCACGCTGGTAGCCCGCCGTCCAACCCAGGGCAC
GTGGCGGCTCCCGCAGCTGTTACTTCGGTTGCCATCAAGCGCCCGGCGAC
CTTTGCCTCCTCTTCCTCATTTCCTCCCACCGTCGACAGCAATGCCCGCG
GGGCAAGCGGTGTACGCGGAAGTTCTGGCATGGGCGCGCCCGGCTCCGGT
GCTTTCTCGTCAGGGTATGAACATGGTTACGGGGTTCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig7301:317..4055+

>mRNA_H-paniculata_contig7301.15273.1 ID=mRNA_H-paniculata_contig7301.15273.1|Name=mRNA_H-paniculata_contig7301.15273.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2778bp|location=Sequence derived from alignment at H-paniculata_contig7301:317..4055+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGACTCCCTCGCAACAGAAGATGGAGGACTCCCTCGCAACAGAAG
GTTCCTCCTATTCCAGCTACACAAATAACAACAGCCGACTACACAACCGC
AACAGTAGCAGCAACAACAACAACAACACCGACAGCCGTACAAACAACCT
GCACTCACGCCGCAGCTTCACAGACTGGCAACCGCCCCCTCATCATAGCA
TGCTGCACAGCAAAACAGCTCCCGCCGATCCCCACAGAGGGTCAGGCCTG
CTACAACACCCCTCCAACGCTTCGCCACCCGACGCCGACGTCTTCATGAT
GCCTACGGCTGGCTTCGCCCGGAAGCGCCCGGAGGCGGATCGGTCGCCTC
CCCGCCGCCGTCCCGAGCCGCCTGCATCTCGCGTCCTGTCCGTTGGCGAT
ATGATGAACAGCGGAGGCGGAGGGCGTGACATGTCGACTGCGAGCGCATC
GGCGAAGAAGAACGGGCTATTAGTAACGTCATCGACTGGTGCTATTAGCT
CGGTGCCGGGAAGAGGAGGAGAAGCAGTGGCGTCGGGCAAAGCGTTAGGA
AACGCGGTCCATGGTAACAAGGGCTCAGGGATGGTCGAATTTTATACTGG
CGGCGGTGGCAGCCGCGCGAATGCGTTCGAGAGGGAAGCACCCGCTGCGC
CTCGCCAACGGGGATACAACATGCGTAACTTTTTGTTGGACGGCGACGCT
GCTGGCAACGACAGGATGGGCGCCCAGACGTCCGAGATGCGTTCGGGTGT
CCAGGCGAGCCGAGGTTTTTCCGCCATGCCCATGGCTGTAATGAAGGTAC
ACGCGGTCACGGCCACCGCCGGAAAAAACGGGAGCTCCTACGGTGGCGGC
GGCGATGACGGCGTGTACAAGGCTAGTAGTAGTAGGTTCGACAGCAACGC
GGCGGCCGGCGGTCGTCGCGGAATAATGACTCCTTCCGGTGAAGGTGCTC
CTCATCCTCCTCCTCCTCCTCCCAGTAACAGGGGAACCGTAGGGGACAGT
TTTAACGGGAGCAGCAGTAGCAATGGTAACGGCAGCAGCAACAACAGCAA
CAGCAACAGCAACGAAGGCCGAGGTCATCTCCTTGACGGTCATGGCTACC
ACCGAGAGAACGCTGCGGCCGCCGCCGCGGCCGCCGGATCTCTCAGGCCG
AACAGCAATGCTGCCGCTGCGCCCGAGCGTTTCCGCCGCCGCCACGCTGG
TAGCCCGCCGTCCAACCCAGGGCACGTGGCGGCTCCCGCAGCTGTTACTT
CGGTTGCCATCAAGCGCCCGGCGACCTTTGCCTCCTCTTCCTCATTTCCT
CCCACCGTCGACAGCAATGCCCGCGGGGCAAGCGGTGTACGCGGAAGTTC
TGGCATGGGCGCGCCCGGCTCCGGTGCTTTCTCGTCAGGGTATGAACATG
GTTACGGGGTTCGGGTTCCTCCTATTCCAGCTACACAAATAACAACAGCC
GACTACACAACCGCAACAGTAGCAGCAACAACAACAACAACACCGACAGC
CGTACAAACAACCTGCACTCACGCCGCAGCTTCACAGACTGGCAACCGCC
CCCTCATCATAGCATGCTGCACAGCAAAACAGCTCCCGCCGATCCCCACA
GAGGGTCAGGCCTGCTACAACACCCCTCCAACGCTTCGCCACCCGACGCC
GACGTCTTCATGATGCCTACGGCTGGCTTCGCCCGGAAGCGCCCGGAGGC
GGATCGGTCGCCTCCCCGCCGCCGTCCCGAGCCGCCTGCATCTCGCGTCC
TGTCCGTTGGCGATATGATGAACAGCGGAGGCGGAGGGCGTGACATGTCG
ACTGCGAGCGCATCGGCGAAGAAGAACGGGCTATTAGTAACGTCATCGAC
TGGTGCTATTAGCTCGGTGCCGGGAAGAGGAGGAGAAGCAGTGGCGTCGG
GCAAAGCGTTAGGAAACGCGGTCCATGGTAACAAGGGCTCAGGGATGGTC
GAATTTTATACTGGCGGCGGTGGCAGCCGCGCGAATGCGTTCGAGAGGGA
AGCACCCGCTGCGCCTCGCCAACGGGGATACAACATGCGTAACTTTTTGT
TGGACGGCGACGCTGCTGGCAACGACAGGATGGGCGCCCAGACGTCCGAG
ATGCGTTCGGGTGTCCAGGCGAGCCGAGGTTTTTCCGCCATGCCCATGGC
TGTAATGAAGGTACACGCGGTCACGGCCACCGCCGGAAAAAACGGGAGCT
CCTACGGTGGCGGCGGCGATGACGGCGTGTACAAGGCTAGTAGTAGTAGG
TTCGACAGCAACGCGGCGGCCGGCGGTCGTCGCGGAATAATGACTCCTTC
CGGTGAAGGTGCTCCTCATCCTCCTCCTCCTCCTCCCAGTAACAGGGGAA
CCGTAGGGGACAGTTTTAACGGGAGCAGCAGTAGCAATGGTAACGGCAGC
AGCAACAACAGCAACAGCAACAGCAACGAAGGCCGAGGTCATCTCCTTGA
CGGTCATGGCTACCACCGAGAGAACGCTGCGGCCGCCGCCGCGGCCGCCG
GATCTCTCAGGCCGAACAGCAATGCTGCCGCTGCGCCCGAGCGTTTCCGC
CGCCGCCACGCTGGTAGCCCGCCGTCCAACCCAGGGCACGTGGCGGCTCC
CGCAGCTGTTACTTCGGTTGCCATCAAGCGCCCGGCGACCTTTGCCTCCT
CTTCCTCATTTCCTCCCACCGTCGACAGCAATGCCCGCGGGGCAAGCGGT
GTACGCGGAAGTTCTGGCATGGGCGCGCCCGGCTCCGGTGCTTTCTCGTC
AGGGTATGAACATGGTTACGGGGTTCGG
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